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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIOQ] human gut metagenome; human gut
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182466450
OIOQ01000619
[OIOQ] human gut metagenome; human gut
13
88
+
Ala
TGC
[ENA]
¢þ
>WENV182466452
OIOQ01000671
[OIOQ] human gut metagenome; human gut
43
117
+
Glu
CTC
[ENA]
¢þ
>WENV182466412
OIOQ01000048
[OIOQ] human gut metagenome; human gut
113
40
-
fMet
CAT
[ENA]
¢þ
>WENV182466453
OIOQ01000671
[OIOQ] human gut metagenome; human gut
121
196
+
Lys
CTT
[ENA]
¢þ
>WENV182466476
OIOQ01002781
[OIOQ] human gut metagenome; human gut
125
198
+
Lys
CTT
[ENA]
¢þ
>WENV182466466
OIOQ01001267
[OIOQ] human gut metagenome; human gut
133
207
+
Gly
TCC
[ENA]
¢þ
>WENV182466439
OIOQ01000316
[OIOQ] human gut metagenome; human gut
149
74
-
Val
TAC
[ENA]
¢þ
>WENV182466480
OIOQ01003386
[OIOQ] human gut metagenome; human gut
156
65
-
Ser
GGA
[ENA]
¢þ
>WENV182466477
OIOQ01002976
[OIOQ] human gut metagenome; human gut
177
251
+
Glu
TTC
[ENA]
¢þ
>WENV182466459
OIOQ01000903
[OIOQ] human gut metagenome; human gut
190
110
-
Leu
TAG
[ENA]
¢þ
>WENV182466475
OIOQ01002702
[OIOQ] human gut metagenome; human gut
202
116
-
Leu
CAG
[ENA]
¢þ
>WENV182466474
OIOQ01002394
[OIOQ] human gut metagenome; human gut
217
142
-
Ala
GGC
[ENA]
¢þ
>WENV182466456
OIOQ01000830
[OIOQ] human gut metagenome; human gut
223
149
-
Cys
GCA
[ENA]
¢þ
>WENV182466470
OIOQ01001403
[OIOQ] human gut metagenome; human gut
231
305
+
Pro
TGG
[ENA]
¢þ
>WENV182466414
OIOQ01000063
[OIOQ] human gut metagenome; human gut
233
158
-
His
GTG
[ENA]
¢þ
>WENV182466432
OIOQ01000182
[OIOQ] human gut metagenome; human gut
247
162
-
Ser
TGA
[ENA]
¢þ
>WENV182466478
OIOQ01002976
[OIOQ] human gut metagenome; human gut
257
332
+
Val
TAC
[ENA]
¢þ
>WENV182466438
OIOQ01000316
[OIOQ] human gut metagenome; human gut
260
186
-
Asp
GTC
[ENA]
¢þ
>WENV182466435
OIOQ01000267
[OIOQ] human gut metagenome; human gut
283
209
-
Asn
GTT
[ENA]
¢þ
>WENV182466420
OIOQ01000139
[OIOQ] human gut metagenome; human gut
320
245
-
Gly
CCC
[ENA]
¢þ
>WENV182466482
OIOQ01003699
[OIOQ] human gut metagenome; human gut
340
414
+
Pro
GGG
[ENA]
¢þ
>WENV182466479
OIOQ01003237
[OIOQ] human gut metagenome; human gut
356
431
+
Thr
GGT
[ENA]
¢þ
>WENV182466484
OIOQ01003917
[OIOQ] human gut metagenome; human gut
386
460
+
Pro
GGG
[ENA]
¢þ
>WENV182466458
OIOQ01000903
[OIOQ] human gut metagenome; human gut
408
337
-
Gln
TTG
[ENA]
¢þ
>WENV182466461
OIOQ01001000
[OIOQ] human gut metagenome; human gut
424
348
-
Arg
ACG
[ENA]
¢þ
>WENV182466483
OIOQ01003699
[OIOQ] human gut metagenome; human gut
430
500
+
Gly
TCC
[ENA]
¢þ
>WENV182466481
OIOQ01003583
[OIOQ] human gut metagenome; human gut
449
374
-
Lys
CTT
[ENA]
¢þ
>WENV182466465
OIOQ01001180
[OIOQ] human gut metagenome; human gut
474
549
+
Arg
CCT
[ENA]
¢þ
>WENV182466467
OIOQ01001267
[OIOQ] human gut metagenome; human gut
489
399
-
Ser
GGA
[ENA]
¢þ
>WENV182466457
OIOQ01000903
[OIOQ] human gut metagenome; human gut
491
417
-
His
GTG
[ENA]
¢þ
>WENV182466473
OIOQ01002108
[OIOQ] human gut metagenome; human gut
535
460
-
His
GTG
[ENA]
¢þ
>WENV182466446
OIOQ01000474
[OIOQ] human gut metagenome; human gut
584
671
+
Ser
GCT
[ENA]
¢þ
>WENV182466471
OIOQ01001914
[OIOQ] human gut metagenome; human gut
586
511
-
Val
GAC
[ENA]
¢þ
>WENV182466464
OIOQ01001134
[OIOQ] human gut metagenome; human gut
596
675
+
Leu
CAA
[ENA]
¢þ
>WENV182466451
OIOQ01000630
[OIOQ] human gut metagenome; human gut
618
701
+
Tyr
GTA
[ENA]
¢þ
>WENV182466472
OIOQ01002108
[OIOQ] human gut metagenome; human gut
624
548
-
Arg
TCT
[ENA]
¢þ
>WENV182466468
OIOQ01001272
[OIOQ] human gut metagenome; human gut
659
734
+
Pro
TGG
[ENA]
¢þ
>WENV182466437
OIOQ01000312
[OIOQ] human gut metagenome; human gut
756
830
+
Ala
GGC
[ENA]
¢þ
>WENV182466469
OIOQ01001272
[OIOQ] human gut metagenome; human gut
769
839
+
Gly
TCC
[ENA]
¢þ
>WENV182466462
OIOQ01001024
[OIOQ] human gut metagenome; human gut
781
855
+
Met
CAT
[ENA]
¢þ
>WENV182466460
OIOQ01000937
[OIOQ] human gut metagenome; human gut
802
878
+
Met
CAT
[ENA]
¢þ
>WENV182466463
OIOQ01001124
[OIOQ] human gut metagenome; human gut
825
898
+
Asp
GTC
[ENA]
¢þ
>WENV182466447
OIOQ01000474
[OIOQ] human gut metagenome; human gut
1026
1100
+
Glu
CTC
[ENA]
¢þ
>WENV182466413
OIOQ01000058
[OIOQ] human gut metagenome; human gut
1123
1195
+
Glu
TTC
[ENA]
¢þ
>WENV182466444
OIOQ01000424
[OIOQ] human gut metagenome; human gut
1144
1070
-
Arg
TCT
[ENA]
¢þ
>WENV182466440
OIOQ01000339
[OIOQ] human gut metagenome; human gut
1318
1393
+
Pro
GGG
[ENA]
¢þ
>WENV182466455
OIOQ01000781
[OIOQ] human gut metagenome; human gut
1420
1348
-
Thr
GGT
[ENA]
¢þ
>WENV182466445
OIOQ01000473
[OIOQ] human gut metagenome; human gut
1502
1427
-
Pro
TGG
[ENA]
¢þ
>WENV182466449
OIOQ01000539
[OIOQ] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182466454
OIOQ01000695
[OIOQ] human gut metagenome; human gut
1614
1698
+
Leu
CAA
[ENA]
¢þ
>WENV182466422
OIOQ01000174
[OIOQ] human gut metagenome; human gut
1650
1735
+
Ser
GCT
[ENA]
¢þ
>WENV182466448
OIOQ01000539
[OIOQ] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182466423
OIOQ01000174
[OIOQ] human gut metagenome; human gut
1741
1816
+
Arg
ACG
[ENA]
¢þ
>WENV182466441
OIOQ01000351
[OIOQ] human gut metagenome; human gut
1761
1676
-
Ser
TGA
[ENA]
¢þ
>WENV182466424
OIOQ01000174
[OIOQ] human gut metagenome; human gut
1823
1909
+
Ser
TGA
[ENA]
¢þ
>WENV182466425
OIOQ01000174
[OIOQ] human gut metagenome; human gut
1915
1986
+
Gln
CTG
[ENA]
¢þ
>WENV182466411
OIOQ01000033
[OIOQ] human gut metagenome; human gut
1965
1890
-
Phe
GAA
[ENA]
¢þ
>WENV182466426
OIOQ01000174
[OIOQ] human gut metagenome; human gut
1995
2068
+
Phe
GAA
[ENA]
¢þ
>WENV182466410
OIOQ01000033
[OIOQ] human gut metagenome; human gut
2146
2219
+
Pro
CGG
[ENA]
¢þ
>WENV182466427
OIOQ01000174
[OIOQ] human gut metagenome; human gut
2186
2257
+
Gln
TTG
[ENA]
¢þ
>WENV182466428
OIOQ01000174
[OIOQ] human gut metagenome; human gut
2270
2341
+
Arg
TCG
[ENA]
¢þ
>WENV182466429
OIOQ01000174
[OIOQ] human gut metagenome; human gut
2347
2420
+
His
GTG
[ENA]
¢þ
>WENV182466430
OIOQ01000174
[OIOQ] human gut metagenome; human gut
2425
2499
+
Thr
TGT
[ENA]
¢þ
>WENV182466433
OIOQ01000198
[OIOQ] human gut metagenome; human gut
3047
3118
+
Gln
TTG
[ENA]
¢þ
>WENV182466415
OIOQ01000065
[OIOQ] human gut metagenome; human gut
3866
3940
+
Ile2
CAT
[ENA]
¢þ
>WENV182466442
OIOQ01000356
[OIOQ] human gut metagenome; human gut
4217
4145
-
Arg
CCG
[ENA]
¢þ
>WENV182466443
OIOQ01000376
[OIOQ] human gut metagenome; human gut
4303
4376
+
Lys
CTT
[ENA]
¢þ
>WENV182466436
OIOQ01000301
[OIOQ] human gut metagenome; human gut
4913
4986
+
Trp
CCA
[ENA]
¢þ
>WENV182466404
OIOQ01000013
[OIOQ] human gut metagenome; human gut
5245
5318
+
fMet
CAT
[ENA]
¢þ
>WENV182466405
OIOQ01000013
[OIOQ] human gut metagenome; human gut
5536
5609
+
Asn
GTT
[ENA]
¢þ
>WENV182466406
OIOQ01000013
[OIOQ] human gut metagenome; human gut
5616
5689
+
Trp
CCA
[ENA]
¢þ
>WENV182466407
OIOQ01000013
[OIOQ] human gut metagenome; human gut
5694
5765
+
Gln
TTG
[ENA]
¢þ
>WENV182466408
OIOQ01000013
[OIOQ] human gut metagenome; human gut
5770
5842
+
Glu
TTC
[ENA]
¢þ
>WENV182466409
OIOQ01000013
[OIOQ] human gut metagenome; human gut
6006
6088
+
Tyr
GTA
[ENA]
¢þ
>WENV182466434
OIOQ01000261
[OIOQ] human gut metagenome; human gut
6377
6304
-
Thr
CGT
[ENA]
¢þ
>WENV182466418
OIOQ01000114
[OIOQ] human gut metagenome; human gut
7431
7506
+
Lys
TTT
[ENA]
¢þ
>WENV182466421
OIOQ01000143
[OIOQ] human gut metagenome; human gut
9030
9118
+
Ser
GGA
[ENA]
¢þ
>WENV182466431
OIOQ01000177
[OIOQ] human gut metagenome; human gut
9069
9157
+
Ser
GGA
[ENA]
¢þ
>WENV182466419
OIOQ01000133
[OIOQ] human gut metagenome; human gut
9901
9975
+
Thr
TGT
[ENA]
¢þ
>WENV182466417
OIOQ01000081
[OIOQ] human gut metagenome; human gut
13201
13128
-
Gly
GCC
[ENA]
¢þ
>WENV182466416
OIOQ01000070
[OIOQ] human gut metagenome; human gut
14095
14019
-
Val
TAC
[ENA]
¢þ
>WENV182466403
OIOQ01000001
[OIOQ] human gut metagenome; human gut
50203
50275
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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