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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OIOT] human gut metagenome; human gut
HIT:
150 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182467232
OIOT01010511
[OIOT] human gut metagenome; human gut
1
76
+
Asp
GTC
[ENA]
¢þ
>WENV182467222
OIOT01008727
[OIOT] human gut metagenome; human gut
13
90
+
Arg
CCG
[ENA]
¢þ
>WENV182467215
OIOT01006811
[OIOT] human gut metagenome; human gut
17
97
+
Leu
TAG
[ENA]
¢þ
>WENV182467198
OIOT01003267
[OIOT] human gut metagenome; human gut
39
114
+
Asp
GTC
[ENA]
¢þ
>WENV182467190
OIOT01002426
[OIOT] human gut metagenome; human gut
52
128
+
Arg
TCT
[ENA]
¢þ
>WENV182467106
OIOT01000025
[OIOT] human gut metagenome; human gut
71
143
+
Thr
GGT
[ENA]
¢þ
>WENV182467233
OIOT01010511
[OIOT] human gut metagenome; human gut
82
155
+
Val
TAC
[ENA]
¢þ
>WENV182467238
OIOT01010636
[OIOT] human gut metagenome; human gut
87
12
-
Thr
CGT
[ENA]
¢þ
>WENV182467192
OIOT01002555
[OIOT] human gut metagenome; human gut
88
3
-
Leu
CAA
[ENA]
¢þ
>WENV182467220
OIOT01008096
[OIOT] human gut metagenome; human gut
92
165
+
Asn
GTT
[ENA]
¢þ
>WENV182467237
OIOT01010543
[OIOT] human gut metagenome; human gut
106
178
+
Trp
CCA
[ENA]
¢þ
>WENV182467199
OIOT01003267
[OIOT] human gut metagenome; human gut
120
195
+
Phe
GAA
[ENA]
¢þ
>WENV182467210
OIOT01004953
[OIOT] human gut metagenome; human gut
136
52
-
Leu
CAA
[ENA]
¢þ
>WENV182467197
OIOT01002987
[OIOT] human gut metagenome; human gut
148
73
-
Val
TAC
[ENA]
¢þ
>WENV182467118
OIOT01000047
[OIOT] human gut metagenome; human gut
164
89
-
Val
TAC
[ENA]
¢þ
>WENV182467213
OIOT01006529
[OIOT] human gut metagenome; human gut
166
241
+
Glu
TTC
[ENA]
¢þ
>WENV182467234
OIOT01010511
[OIOT] human gut metagenome; human gut
169
250
+
Tyr
GTA
[ENA]
¢þ
>WENV182467219
OIOT01007907
[OIOT] human gut metagenome; human gut
171
95
-
Met
CAT
[ENA]
¢þ
>WENV182467212
OIOT01005262
[OIOT] human gut metagenome; human gut
176
87
-
Ser
TGA
[ENA]
¢þ
>WENV182467225
OIOT01010358
[OIOT] human gut metagenome; human gut
184
94
-
Ser
GCT
[ENA]
¢þ
>WENV182467104
OIOT01000024
[OIOT] human gut metagenome; human gut
190
264
+
Ile
GAT
[ENA]
¢þ
>WENV182467214
OIOT01006707
[OIOT] human gut metagenome; human gut
194
269
+
Asn
GTT
[ENA]
¢þ
>WENV182467211
OIOT01005159
[OIOT] human gut metagenome; human gut
210
137
-
Gln
CTG
[ENA]
¢þ
>WENV182467200
OIOT01003267
[OIOT] human gut metagenome; human gut
212
296
+
Leu
GAG
[ENA]
¢þ
>WENV182467122
OIOT01000068
[OIOT] human gut metagenome; human gut
232
161
-
Gln
CTG
[ENA]
¢þ
>WENV182467137
OIOT01000176
[OIOT] human gut metagenome; human gut
236
148
-
Ser
GGA
[ENA]
¢þ
>WENV182467239
OIOT01011651
[OIOT] human gut metagenome; human gut
263
350
+
Leu
CAG
[ENA]
¢þ
>WENV182467228
OIOT01010484
[OIOT] human gut metagenome; human gut
274
347
+
Arg
ACG
[ENA]
¢þ
>WENV182467141
OIOT01000197
[OIOT] human gut metagenome; human gut
274
347
+
fMet
CAT
[ENA]
¢þ
>WENV182467235
OIOT01010511
[OIOT] human gut metagenome; human gut
294
366
+
Thr
TGT
[ENA]
¢þ
>WENV182467229
OIOT01010493
[OIOT] human gut metagenome; human gut
297
368
+
Asn
GTT
[ENA]
¢þ
>WENV182467209
OIOT01004384
[OIOT] human gut metagenome; human gut
303
220
-
Leu
CAG
[ENA]
¢þ
>WENV182467227
OIOT01010360
[OIOT] human gut metagenome; human gut
304
228
-
Ile
GAT
[ENA]
¢þ
>WENV182467170
OIOT01000983
[OIOT] human gut metagenome; human gut
308
384
+
Asp
GTC
[ENA]
¢þ
>WENV182467216
OIOT01006916
[OIOT] human gut metagenome; human gut
322
394
+
Thr
CGT
[ENA]
¢þ
>WENV182467177
OIOT01001215
[OIOT] human gut metagenome; human gut
329
400
+
Glu
TTC
[ENA]
¢þ
>WENV182467202
OIOT01003632
[OIOT] human gut metagenome; human gut
332
408
+
Pro
CGG
[ENA]
¢þ
>WENV182467207
OIOT01004151
[OIOT] human gut metagenome; human gut
360
448
+
Ser
TGA
[ENA]
¢þ
>WENV182467105
OIOT01000024
[OIOT] human gut metagenome; human gut
365
439
+
Ala
TGC
[ENA]
¢þ
>WENV182467221
OIOT01008375
[OIOT] human gut metagenome; human gut
367
292
-
Lys
CTT
[ENA]
¢þ
>WENV182467206
OIOT01003925
[OIOT] human gut metagenome; human gut
368
453
+
Leu
CAA
[ENA]
¢þ
>WENV182467204
OIOT01003889
[OIOT] human gut metagenome; human gut
372
301
-
Gln
CTG
[ENA]
¢þ
>WENV182467230
OIOT01010493
[OIOT] human gut metagenome; human gut
373
446
+
Glu
TTC
[ENA]
¢þ
>WENV182467226
OIOT01010360
[OIOT] human gut metagenome; human gut
384
309
-
Ala
TGC
[ENA]
¢þ
>WENV182467171
OIOT01000983
[OIOT] human gut metagenome; human gut
387
462
+
Phe
GAA
[ENA]
¢þ
>WENV182467236
OIOT01010511
[OIOT] human gut metagenome; human gut
394
469
+
Ile2
CAT
[ENA]
¢þ
>WENV182467099
OIOT01000018
[OIOT] human gut metagenome; human gut
408
334
-
Ala
GGC
[ENA]
¢þ
>WENV182467169
OIOT01000964
[OIOT] human gut metagenome; human gut
424
352
-
Arg
CCG
[ENA]
¢þ
>WENV182467178
OIOT01001215
[OIOT] human gut metagenome; human gut
428
500
+
Cys
GCA
[ENA]
¢þ
>WENV182467196
OIOT01002987
[OIOT] human gut metagenome; human gut
431
356
-
Lys
TTT
[ENA]
¢þ
>WENV182467231
OIOT01010493
[OIOT] human gut metagenome; human gut
450
521
+
Cys
GCA
[ENA]
¢þ
>WENV182467205
OIOT01003910
[OIOT] human gut metagenome; human gut
451
525
+
Lys
CTT
[ENA]
¢þ
>WENV182467218
OIOT01007481
[OIOT] human gut metagenome; human gut
454
368
-
Leu
GAG
[ENA]
¢þ
>WENV182467193
OIOT01002643
[OIOT] human gut metagenome; human gut
468
554
+
Ser
TGA
[ENA]
¢þ
>WENV182467203
OIOT01003644
[OIOT] human gut metagenome; human gut
471
544
+
Lys
CTT
[ENA]
¢þ
>WENV182467172
OIOT01000983
[OIOT] human gut metagenome; human gut
471
545
+
Gly
GCC
[ENA]
¢þ
>WENV182467175
OIOT01000986
[OIOT] human gut metagenome; human gut
486
410
-
Val
CAC
[ENA]
¢þ
>WENV182467191
OIOT01002552
[OIOT] human gut metagenome; human gut
486
560
+
Phe
GAA
[ENA]
¢þ
>WENV182467201
OIOT01003552
[OIOT] human gut metagenome; human gut
487
414
-
Arg
CCG
[ENA]
¢þ
>WENV182467181
OIOT01001308
[OIOT] human gut metagenome; human gut
493
583
+
Ser
GGA
[ENA]
¢þ
>WENV182467224
OIOT01009221
[OIOT] human gut metagenome; human gut
499
413
-
Leu
TAA
[ENA]
¢þ
>WENV182467161
OIOT01000738
[OIOT] human gut metagenome; human gut
504
574
+
Gly
TCC
[ENA]
¢þ
>WENV182467195
OIOT01002987
[OIOT] human gut metagenome; human gut
509
434
-
Val
TAC
[ENA]
¢þ
>WENV182467159
OIOT01000683
[OIOT] human gut metagenome; human gut
538
456
-
Leu
CAG
[ENA]
¢þ
>WENV182467173
OIOT01000983
[OIOT] human gut metagenome; human gut
553
627
+
Cys
GCA
[ENA]
¢þ
>WENV182467217
OIOT01007259
[OIOT] human gut metagenome; human gut
557
481
-
Arg
TCT
[ENA]
¢þ
>WENV182467223
OIOT01008818
[OIOT] human gut metagenome; human gut
562
486
-
Arg
TCT
[ENA]
¢þ
>WENV182467162
OIOT01000738
[OIOT] human gut metagenome; human gut
625
700
+
Arg
TCT
[ENA]
¢þ
>WENV182467174
OIOT01000983
[OIOT] human gut metagenome; human gut
653
741
+
Leu
TAA
[ENA]
¢þ
>WENV182467194
OIOT01002643
[OIOT] human gut metagenome; human gut
691
782
+
Ser
GGA
[ENA]
¢þ
>WENV182467163
OIOT01000738
[OIOT] human gut metagenome; human gut
705
779
+
His
GTG
[ENA]
¢þ
>WENV182467208
OIOT01004154
[OIOT] human gut metagenome; human gut
731
655
-
Arg
CCT
[ENA]
¢þ
>WENV182467187
OIOT01001959
[OIOT] human gut metagenome; human gut
751
835
+
Leu
AAG
[ENA]
¢þ
>WENV182467168
OIOT01000903
[OIOT] human gut metagenome; human gut
776
848
+
Arg
CCT
[ENA]
¢þ
>WENV182467150
OIOT01000529
[OIOT] human gut metagenome; human gut
798
881
+
Leu
TAG
[ENA]
¢þ
>WENV182467188
OIOT01002366
[OIOT] human gut metagenome; human gut
799
726
-
Ala
TGC
[ENA]
¢þ
>WENV182467176
OIOT01001205
[OIOT] human gut metagenome; human gut
820
892
+
Trp
CCA
[ENA]
¢þ
>WENV182467164
OIOT01000738
[OIOT] human gut metagenome; human gut
831
902
+
Gln
TTG
[ENA]
¢þ
>WENV182467186
OIOT01001820
[OIOT] human gut metagenome; human gut
865
952
+
Ser
GCT
[ENA]
¢þ
>WENV182467189
OIOT01002376
[OIOT] human gut metagenome; human gut
905
831
-
Asn
GTT
[ENA]
¢þ
>WENV182467182
OIOT01001398
[OIOT] human gut metagenome; human gut
923
848
-
Lys
TTT
[ENA]
¢þ
>WENV182467165
OIOT01000738
[OIOT] human gut metagenome; human gut
937
1009
+
Lys
TTT
[ENA]
¢þ
>WENV182467134
OIOT01000129
[OIOT] human gut metagenome; human gut
996
924
-
Glu
TTC
[ENA]
¢þ
>WENV182467166
OIOT01000738
[OIOT] human gut metagenome; human gut
1058
1140
+
Leu
TAG
[ENA]
¢þ
>WENV182467185
OIOT01001803
[OIOT] human gut metagenome; human gut
1072
1000
-
Gly
CCC
[ENA]
¢þ
>WENV182467167
OIOT01000770
[OIOT] human gut metagenome; human gut
1102
1028
-
Ala
GGC
[ENA]
¢þ
>WENV182467183
OIOT01001513
[OIOT] human gut metagenome; human gut
1213
1285
+
Ala
CGC
[ENA]
¢þ
>WENV182467184
OIOT01001527
[OIOT] human gut metagenome; human gut
1319
1225
-
SeC
TCA
[ENA]
¢þ
>WENV182467156
OIOT01000556
[OIOT] human gut metagenome; human gut
1341
1414
+
Thr
CGT
[ENA]
¢þ
>WENV182467107
OIOT01000025
[OIOT] human gut metagenome; human gut
1431
1504
+
Trp
CCA
[ENA]
¢þ
>WENV182467180
OIOT01001280
[OIOT] human gut metagenome; human gut
1496
1423
-
Pro
CGG
[ENA]
¢þ
>WENV182467179
OIOT01001280
[OIOT] human gut metagenome; human gut
1586
1513
-
Phe
GAA
[ENA]
¢þ
>WENV182467148
OIOT01000336
[OIOT] human gut metagenome; human gut
1598
1671
+
Trp
CCA
[ENA]
¢þ
>WENV182467095
OIOT01000007
[OIOT] human gut metagenome; human gut
1666
1749
+
Tyr
GTA
[ENA]
¢þ
>WENV182467144
OIOT01000238
[OIOT] human gut metagenome; human gut
1865
1792
-
Gly
GCC
[ENA]
¢þ
>WENV182467158
OIOT01000663
[OIOT] human gut metagenome; human gut
2258
2187
-
Cys
GCA
[ENA]
¢þ
>WENV182467155
OIOT01000551
[OIOT] human gut metagenome; human gut
2298
2224
-
Gly
TCC
[ENA]
¢þ
>WENV182467123
OIOT01000073
[OIOT] human gut metagenome; human gut
2299
2375
+
Asp
GTC
[ENA]
¢þ
>WENV182467160
OIOT01000704
[OIOT] human gut metagenome; human gut
2415
2489
+
Thr
TGT
[ENA]
¢þ
>WENV182467154
OIOT01000551
[OIOT] human gut metagenome; human gut
2499
2415
-
Tyr
GTA
[ENA]
¢þ
>WENV182467153
OIOT01000551
[OIOT] human gut metagenome; human gut
2583
2508
-
Thr
TGT
[ENA]
¢þ
>WENV182467157
OIOT01000598
[OIOT] human gut metagenome; human gut
2647
2720
+
Lys
TTT
[ENA]
¢þ
>WENV182467131
OIOT01000116
[OIOT] human gut metagenome; human gut
2722
2810
+
Ser
GCT
[ENA]
¢þ
>WENV182467126
OIOT01000094
[OIOT] human gut metagenome; human gut
2944
3015
+
Gln
CTG
[ENA]
¢þ
>WENV182467147
OIOT01000329
[OIOT] human gut metagenome; human gut
3167
3238
+
Gln
TTG
[ENA]
¢þ
>WENV182467152
OIOT01000545
[OIOT] human gut metagenome; human gut
3178
3106
-
Thr
GGT
[ENA]
¢þ
>WENV182467142
OIOT01000208
[OIOT] human gut metagenome; human gut
3251
3325
+
Asn
GTT
[ENA]
¢þ
>WENV182467151
OIOT01000532
[OIOT] human gut metagenome; human gut
3443
3516
+
Lys
CTT
[ENA]
¢þ
>WENV182467098
OIOT01000016
[OIOT] human gut metagenome; human gut
3462
3389
-
Lys
TTT
[ENA]
¢þ
>WENV182467120
OIOT01000055
[OIOT] human gut metagenome; human gut
3639
3564
-
Pro
CGG
[ENA]
¢þ
>WENV182467149
OIOT01000462
[OIOT] human gut metagenome; human gut
3971
3896
-
Glu
TTC
[ENA]
¢þ
>WENV182467130
OIOT01000110
[OIOT] human gut metagenome; human gut
4015
4099
+
Leu
CAA
[ENA]
¢þ
>WENV182467146
OIOT01000298
[OIOT] human gut metagenome; human gut
4118
4043
-
Val
TAC
[ENA]
¢þ
>WENV182467145
OIOT01000298
[OIOT] human gut metagenome; human gut
4327
4253
-
Asn
GTT
[ENA]
¢þ
>WENV182467119
OIOT01000055
[OIOT] human gut metagenome; human gut
4487
4412
-
Pro
TGG
[ENA]
¢þ
>WENV182467133
OIOT01000129
[OIOT] human gut metagenome; human gut
4492
4567
+
Pro
GGG
[ENA]
¢þ
>WENV182467139
OIOT01000185
[OIOT] human gut metagenome; human gut
5093
5018
-
Gly
GCC
[ENA]
¢þ
>WENV182467132
OIOT01000121
[OIOT] human gut metagenome; human gut
5299
5211
-
Leu
GAG
[ENA]
¢þ
>WENV182467136
OIOT01000158
[OIOT] human gut metagenome; human gut
5666
5754
+
Ser
GGA
[ENA]
¢þ
>WENV182467140
OIOT01000192
[OIOT] human gut metagenome; human gut
6184
6110
-
Met
CAT
[ENA]
¢þ
>WENV182467143
OIOT01000238
[OIOT] human gut metagenome; human gut
6406
6492
+
Leu
TAA
[ENA]
¢þ
>WENV182467138
OIOT01000179
[OIOT] human gut metagenome; human gut
6746
6674
-
Glu
CTC
[ENA]
¢þ
>WENV182467121
OIOT01000060
[OIOT] human gut metagenome; human gut
7673
7585
-
Ser
GGA
[ENA]
¢þ
>WENV182467125
OIOT01000092
[OIOT] human gut metagenome; human gut
7762
7685
-
Arg
TCT
[ENA]
¢þ
>WENV182467127
OIOT01000106
[OIOT] human gut metagenome; human gut
8174
8261
+
Ser
GCT
[ENA]
¢þ
>WENV182467135
OIOT01000150
[OIOT] human gut metagenome; human gut
8246
8171
-
His
GTG
[ENA]
¢þ
>WENV182467128
OIOT01000106
[OIOT] human gut metagenome; human gut
8319
8391
+
Glu
CTC
[ENA]
¢þ
>WENV182467129
OIOT01000106
[OIOT] human gut metagenome; human gut
8408
8481
+
Lys
CTT
[ENA]
¢þ
>WENV182467117
OIOT01000045
[OIOT] human gut metagenome; human gut
10907
10834
-
Lys
CTT
[ENA]
¢þ
>WENV182467110
OIOT01000030
[OIOT] human gut metagenome; human gut
11493
11567
+
Met
CAT
[ENA]
¢þ
>WENV182467096
OIOT01000010
[OIOT] human gut metagenome; human gut
12075
12149
+
Sup
CTA
[ENA]
¢þ
>WENV182467108
OIOT01000028
[OIOT] human gut metagenome; human gut
12232
12307
+
Pro
GGG
[ENA]
¢þ
>WENV182467114
OIOT01000041
[OIOT] human gut metagenome; human gut
12667
12741
+
Arg
TCT
[ENA]
¢þ
>WENV182467112
OIOT01000034
[OIOT] human gut metagenome; human gut
13595
13510
-
Ser
TGA
[ENA]
¢þ
>WENV182467124
OIOT01000077
[OIOT] human gut metagenome; human gut
15362
15449
+
Ser
CGA
[ENA]
¢þ
>WENV182467116
OIOT01000043
[OIOT] human gut metagenome; human gut
21912
21986
+
Asp
GTC
[ENA]
¢þ
>WENV182467113
OIOT01000035
[OIOT] human gut metagenome; human gut
22058
21987
-
Gln
TTG
[ENA]
¢þ
>WENV182467100
OIOT01000019
[OIOT] human gut metagenome; human gut
24886
24958
+
Cys
GCA
[ENA]
¢þ
>WENV182467103
OIOT01000023
[OIOT] human gut metagenome; human gut
25922
25996
+
Thr
TGT
[ENA]
¢þ
>WENV182467109
OIOT01000028
[OIOT] human gut metagenome; human gut
35394
35478
+
Leu
CAA
[ENA]
¢þ
>WENV182467115
OIOT01000042
[OIOT] human gut metagenome; human gut
36438
36511
+
Gly
GCC
[ENA]
¢þ
>WENV182467102
OIOT01000022
[OIOT] human gut metagenome; human gut
36801
36728
-
Trp
CCA
[ENA]
¢þ
>WENV182467111
OIOT01000032
[OIOT] human gut metagenome; human gut
46140
46213
+
Thr
CGT
[ENA]
¢þ
>WENV182467101
OIOT01000021
[OIOT] human gut metagenome; human gut
70119
70192
+
fMet
CAT
[ENA]
¢þ
>WENV182467093
OIOT01000003
[OIOT] human gut metagenome; human gut
80201
80129
-
Arg
CCT
[ENA]
¢þ
>WENV182467097
OIOT01000010
[OIOT] human gut metagenome; human gut
83215
83143
-
fMet
CAT
[ENA]
¢þ
>WENV182467094
OIOT01000004
[OIOT] human gut metagenome; human gut
84361
84287
-
Gly
CCC
[ENA]
¢þ
>WENV182467091
OIOT01000001
[OIOT] human gut metagenome; human gut
94492
94420
-
Glu
TTC
[ENA]
¢þ
>WENV182467092
OIOT01000003
[OIOT] human gut metagenome; human gut
130809
130883
+
Ile2
CAT
[ENA]
¢þ
>WENV182467090
OIOT01000001
[OIOT] human gut metagenome; human gut
165590
165508
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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