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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OIOZ] human gut metagenome; human gut
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182468667
OIOZ01000242
[OIOZ] human gut metagenome; human gut
65
137
+
Thr
GGT
[ENA]
¢þ
>WENV182468686
OIOZ01000577
[OIOZ] human gut metagenome; human gut
94
8
-
Leu
CAA
[ENA]
¢þ
>WENV182468711
OIOZ01001542
[OIOZ] human gut metagenome; human gut
96
170
+
Pro
TGG
[ENA]
¢þ
>WENV182468726
OIOZ01003208
[OIOZ] human gut metagenome; human gut
157
230
+
Gly
CCC
[ENA]
¢þ
>WENV182468690
OIOZ01000636
[OIOZ] human gut metagenome; human gut
159
235
+
Ile
GAT
[ENA]
¢þ
>WENV182468712
OIOZ01001542
[OIOZ] human gut metagenome; human gut
178
248
+
Gly
TCC
[ENA]
¢þ
>WENV182468700
OIOZ01000768
[OIOZ] human gut metagenome; human gut
185
273
+
Ser
GCT
[ENA]
¢þ
>WENV182468723
OIOZ01002797
[OIOZ] human gut metagenome; human gut
219
143
-
Arg
CCG
[ENA]
¢þ
>WENV182468721
OIOZ01002398
[OIOZ] human gut metagenome; human gut
222
313
+
Ser
CGA
[ENA]
¢þ
>WENV182468670
OIOZ01000260
[OIOZ] human gut metagenome; human gut
223
149
-
Cys
GCA
[ENA]
¢þ
>WENV182468717
OIOZ01001652
[OIOZ] human gut metagenome; human gut
230
304
+
Lys
CTT
[ENA]
¢þ
>WENV182468646
OIOZ01000034
[OIOZ] human gut metagenome; human gut
233
158
-
His
GTG
[ENA]
¢þ
>WENV182468706
OIOZ01001051
[OIOZ] human gut metagenome; human gut
235
310
+
Pro
TGG
[ENA]
¢þ
>WENV182468677
OIOZ01000329
[OIOZ] human gut metagenome; human gut
236
162
-
Arg
TCT
[ENA]
¢þ
>WENV182468673
OIOZ01000291
[OIOZ] human gut metagenome; human gut
249
175
-
Met
CAT
[ENA]
¢þ
>WENV182468725
OIOZ01003047
[OIOZ] human gut metagenome; human gut
266
185
-
Leu
TAG
[ENA]
¢þ
>WENV182468704
OIOZ01000863
[OIOZ] human gut metagenome; human gut
268
343
+
Val
GAC
[ENA]
¢þ
>WENV182468724
OIOZ01002849
[OIOZ] human gut metagenome; human gut
280
355
+
Trp
CCA
[ENA]
¢þ
>WENV182468722
OIOZ01002436
[OIOZ] human gut metagenome; human gut
281
357
+
Arg
ACG
[ENA]
¢þ
>WENV182468713
OIOZ01001542
[OIOZ] human gut metagenome; human gut
299
374
+
Arg
TCT
[ENA]
¢þ
>WENV182468718
OIOZ01001764
[OIOZ] human gut metagenome; human gut
330
401
+
Gln
CTG
[ENA]
¢þ
>WENV182468720
OIOZ01001888
[OIOZ] human gut metagenome; human gut
379
304
-
His
GTG
[ENA]
¢þ
>WENV182468714
OIOZ01001542
[OIOZ] human gut metagenome; human gut
379
453
+
His
GTG
[ENA]
¢þ
>WENV182468709
OIOZ01001125
[OIOZ] human gut metagenome; human gut
408
336
-
Gln
CTG
[ENA]
¢þ
>WENV182468719
OIOZ01001764
[OIOZ] human gut metagenome; human gut
412
485
+
Pro
CGG
[ENA]
¢þ
>WENV182468682
OIOZ01000431
[OIOZ] human gut metagenome; human gut
424
497
+
Thr
CGT
[ENA]
¢þ
>WENV182468710
OIOZ01001435
[OIOZ] human gut metagenome; human gut
469
385
-
Leu
TAG
[ENA]
¢þ
>WENV182468715
OIOZ01001542
[OIOZ] human gut metagenome; human gut
506
577
+
Gln
TTG
[ENA]
¢þ
>WENV182468708
OIOZ01001125
[OIOZ] human gut metagenome; human gut
519
444
-
Asn
GTT
[ENA]
¢þ
>WENV182468716
OIOZ01001542
[OIOZ] human gut metagenome; human gut
594
668
+
Lys
TTT
[ENA]
¢þ
>WENV182468707
OIOZ01001125
[OIOZ] human gut metagenome; human gut
601
527
-
Gly
GCC
[ENA]
¢þ
>WENV182468689
OIOZ01000633
[OIOZ] human gut metagenome; human gut
681
608
-
Ile
GAT
[ENA]
¢þ
>WENV182468705
OIOZ01001020
[OIOZ] human gut metagenome; human gut
731
645
-
Leu
CAG
[ENA]
¢þ
>WENV182468698
OIOZ01000665
[OIOZ] human gut metagenome; human gut
782
700
-
Leu
TAG
[ENA]
¢þ
>WENV182468701
OIOZ01000855
[OIOZ] human gut metagenome; human gut
892
968
+
Phe
GAA
[ENA]
¢þ
>WENV182468697
OIOZ01000665
[OIOZ] human gut metagenome; human gut
903
831
-
Lys
TTT
[ENA]
¢þ
>WENV182468702
OIOZ01000855
[OIOZ] human gut metagenome; human gut
997
1072
+
Gly
GCC
[ENA]
¢þ
>WENV182468696
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1012
938
-
Phe
GAA
[ENA]
¢þ
>WENV182468703
OIOZ01000855
[OIOZ] human gut metagenome; human gut
1102
1176
+
Cys
GCA
[ENA]
¢þ
>WENV182468695
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1106
1031
-
fMet
CAT
[ENA]
¢þ
>WENV182468678
OIOZ01000331
[OIOZ] human gut metagenome; human gut
1186
1259
+
Lys
CTT
[ENA]
¢þ
>WENV182468694
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1203
1131
-
Thr
TGT
[ENA]
¢þ
>WENV182468693
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1314
1233
-
Tyr
GTA
[ENA]
¢þ
>WENV182468674
OIOZ01000293
[OIOZ] human gut metagenome; human gut
1390
1316
-
Asp
GTC
[ENA]
¢þ
>WENV182468692
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1399
1326
-
Val
TAC
[ENA]
¢þ
>WENV182468668
OIOZ01000242
[OIOZ] human gut metagenome; human gut
1430
1503
+
Trp
CCA
[ENA]
¢þ
>WENV182468691
OIOZ01000665
[OIOZ] human gut metagenome; human gut
1482
1407
-
Asp
GTC
[ENA]
¢þ
>WENV182468675
OIOZ01000301
[OIOZ] human gut metagenome; human gut
1502
1427
-
Pro
TGG
[ENA]
¢þ
>WENV182468684
OIOZ01000480
[OIOZ] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182468683
OIOZ01000480
[OIOZ] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182468699
OIOZ01000694
[OIOZ] human gut metagenome; human gut
1688
1761
+
fMet
CAT
[ENA]
¢þ
>WENV182468672
OIOZ01000267
[OIOZ] human gut metagenome; human gut
1779
1707
-
Glu
TTC
[ENA]
¢þ
>WENV182468688
OIOZ01000619
[OIOZ] human gut metagenome; human gut
1811
1883
+
Arg
CCG
[ENA]
¢þ
>WENV182468687
OIOZ01000598
[OIOZ] human gut metagenome; human gut
1899
1811
-
Ser
GGA
[ENA]
¢þ
>WENV182468669
OIOZ01000244
[OIOZ] human gut metagenome; human gut
2324
2248
-
Val
TAC
[ENA]
¢þ
>WENV182468679
OIOZ01000366
[OIOZ] human gut metagenome; human gut
2489
2415
-
Ile2
CAT
[ENA]
¢þ
>WENV182468680
OIOZ01000375
[OIOZ] human gut metagenome; human gut
2515
2441
-
Asp
GTC
[ENA]
¢þ
>WENV182468685
OIOZ01000541
[OIOZ] human gut metagenome; human gut
2598
2672
+
Thr
TGT
[ENA]
¢þ
>WENV182468676
OIOZ01000325
[OIOZ] human gut metagenome; human gut
2698
2773
+
Gly
CCC
[ENA]
¢þ
>WENV182468657
OIOZ01000075
[OIOZ] human gut metagenome; human gut
2779
2853
+
Ala
GGC
[ENA]
¢þ
>WENV182468681
OIOZ01000398
[OIOZ] human gut metagenome; human gut
3991
4073
+
Leu
TAG
[ENA]
¢þ
>WENV182468660
OIOZ01000111
[OIOZ] human gut metagenome; human gut
5008
5096
+
Ser
GGA
[ENA]
¢þ
>WENV182468664
OIOZ01000176
[OIOZ] human gut metagenome; human gut
5018
4945
-
Trp
CCA
[ENA]
¢þ
>WENV182468661
OIOZ01000154
[OIOZ] human gut metagenome; human gut
5648
5733
+
Ser
TGA
[ENA]
¢þ
>WENV182468671
OIOZ01000262
[OIOZ] human gut metagenome; human gut
6805
6890
+
Ser
TGA
[ENA]
¢þ
>WENV182468659
OIOZ01000103
[OIOZ] human gut metagenome; human gut
6910
6835
-
Phe
GAA
[ENA]
¢þ
>WENV182468658
OIOZ01000103
[OIOZ] human gut metagenome; human gut
7091
7164
+
Pro
CGG
[ENA]
¢þ
>WENV182468663
OIOZ01000171
[OIOZ] human gut metagenome; human gut
7724
7651
-
Gly
GCC
[ENA]
¢þ
>WENV182468666
OIOZ01000186
[OIOZ] human gut metagenome; human gut
7843
7769
-
Glu
CTC
[ENA]
¢þ
>WENV182468665
OIOZ01000186
[OIOZ] human gut metagenome; human gut
8285
8198
-
Ser
GCT
[ENA]
¢þ
>WENV182468662
OIOZ01000164
[OIOZ] human gut metagenome; human gut
8824
8899
+
Lys
TTT
[ENA]
¢þ
>WENV182468647
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12148
12233
+
Ser
GCT
[ENA]
¢þ
>WENV182468656
OIOZ01000069
[OIOZ] human gut metagenome; human gut
12199
12127
-
Arg
CCT
[ENA]
¢þ
>WENV182468648
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12239
12314
+
Arg
ACG
[ENA]
¢þ
>WENV182468649
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12321
12407
+
Ser
TGA
[ENA]
¢þ
>WENV182468650
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12413
12484
+
Gln
CTG
[ENA]
¢þ
>WENV182468651
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12493
12566
+
Phe
GAA
[ENA]
¢þ
>WENV182468652
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12684
12755
+
Gln
TTG
[ENA]
¢þ
>WENV182468653
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12768
12839
+
Arg
TCG
[ENA]
¢þ
>WENV182468654
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12845
12918
+
His
GTG
[ENA]
¢þ
>WENV182468655
OIOZ01000052
[OIOZ] human gut metagenome; human gut
12923
12997
+
Thr
TGT
[ENA]
¢þ
>WENV182468644
OIOZ01000007
[OIOZ] human gut metagenome; human gut
14932
14857
-
Pro
GGG
[ENA]
¢þ
>WENV182468645
OIOZ01000008
[OIOZ] human gut metagenome; human gut
18043
17972
-
Gln
TTG
[ENA]
¢þ
>WENV182468643
OIOZ01000006
[OIOZ] human gut metagenome; human gut
25357
25275
-
Tyr
GTA
[ENA]
¢þ
>WENV182468642
OIOZ01000006
[OIOZ] human gut metagenome; human gut
25593
25521
-
Glu
TTC
[ENA]
¢þ
>WENV182468641
OIOZ01000006
[OIOZ] human gut metagenome; human gut
25669
25598
-
Gln
TTG
[ENA]
¢þ
>WENV182468640
OIOZ01000006
[OIOZ] human gut metagenome; human gut
25747
25674
-
Trp
CCA
[ENA]
¢þ
>WENV182468639
OIOZ01000006
[OIOZ] human gut metagenome; human gut
25827
25754
-
Asn
GTT
[ENA]
¢þ
>WENV182468638
OIOZ01000006
[OIOZ] human gut metagenome; human gut
26118
26045
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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