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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIPC] human gut metagenome; human gut
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182469137
OIPC01006567
[OIPC] human gut metagenome; human gut
1
84
+
Leu
TAG
[ENA]
¢þ
>WENV182469162
OIPC01011574
[OIPC] human gut metagenome; human gut
18
90
+
Thr
CGT
[ENA]
¢þ
>WENV182469081
OIPC01000439
[OIPC] human gut metagenome; human gut
44
118
+
Ile
GAT
[ENA]
¢þ
>WENV182469142
OIPC01008344
[OIPC] human gut metagenome; human gut
52
142
+
Ser
GCT
[ENA]
¢þ
>WENV182469155
OIPC01010070
[OIPC] human gut metagenome; human gut
54
126
+
Cys
GCA
[ENA]
¢þ
>WENV182469157
OIPC01010529
[OIPC] human gut metagenome; human gut
56
130
+
Glu
CTC
[ENA]
¢þ
>WENV182469145
OIPC01008819
[OIPC] human gut metagenome; human gut
69
145
+
Arg
ACG
[ENA]
¢þ
>WENV182469140
OIPC01007620
[OIPC] human gut metagenome; human gut
92
165
+
Asn
GTT
[ENA]
¢þ
>WENV182469148
OIPC01009585
[OIPC] human gut metagenome; human gut
105
20
-
Leu
AAG
[ENA]
¢þ
>WENV182469134
OIPC01005814
[OIPC] human gut metagenome; human gut
116
187
+
Trp
CCA
[ENA]
¢þ
>WENV182469139
OIPC01006934
[OIPC] human gut metagenome; human gut
125
51
-
Ile2
CAT
[ENA]
¢þ
>WENV182469082
OIPC01000439
[OIPC] human gut metagenome; human gut
128
202
+
Ala
TGC
[ENA]
¢þ
>WENV182469124
OIPC01003189
[OIPC] human gut metagenome; human gut
181
106
-
Thr
GGT
[ENA]
¢þ
>WENV182469132
OIPC01005439
[OIPC] human gut metagenome; human gut
188
268
+
Leu
TAG
[ENA]
¢þ
>WENV182469031
OIPC01000017
[OIPC] human gut metagenome; human gut
200
127
-
fMet
CAT
[ENA]
¢þ
>WENV182469161
OIPC01010935
[OIPC] human gut metagenome; human gut
213
287
+
Arg
CCG
[ENA]
¢þ
>WENV182469159
OIPC01010547
[OIPC] human gut metagenome; human gut
226
154
-
Thr
CGT
[ENA]
¢þ
>WENV182469154
OIPC01009743
[OIPC] human gut metagenome; human gut
235
161
-
Glu
CTC
[ENA]
¢þ
>WENV182469152
OIPC01009717
[OIPC] human gut metagenome; human gut
242
157
-
Leu
GAG
[ENA]
¢þ
>WENV182469156
OIPC01010317
[OIPC] human gut metagenome; human gut
247
176
-
Arg
CCG
[ENA]
¢þ
>WENV182469094
OIPC01000919
[OIPC] human gut metagenome; human gut
252
178
-
Thr
TGT
[ENA]
¢þ
>WENV182469127
OIPC01003562
[OIPC] human gut metagenome; human gut
258
331
+
Gly
GCC
[ENA]
¢þ
>WENV182469123
OIPC01003189
[OIPC] human gut metagenome; human gut
262
188
-
Gly
TCC
[ENA]
¢þ
>WENV182469144
OIPC01008648
[OIPC] human gut metagenome; human gut
273
348
+
Phe
GAA
[ENA]
¢þ
>WENV182469147
OIPC01009585
[OIPC] human gut metagenome; human gut
283
367
+
Leu
CAG
[ENA]
¢þ
>WENV182469104
OIPC01001876
[OIPC] human gut metagenome; human gut
294
219
-
Ala
CGC
[ENA]
¢þ
>WENV182469107
OIPC01002023
[OIPC] human gut metagenome; human gut
311
387
+
Pro
CGG
[ENA]
¢þ
>WENV182469158
OIPC01010529
[OIPC] human gut metagenome; human gut
317
392
+
Lys
CTT
[ENA]
¢þ
>WENV182469153
OIPC01009743
[OIPC] human gut metagenome; human gut
319
244
-
Pro
CGG
[ENA]
¢þ
>WENV182469151
OIPC01009717
[OIPC] human gut metagenome; human gut
335
260
-
Phe
GAA
[ENA]
¢þ
>WENV182469068
OIPC01000236
[OIPC] human gut metagenome; human gut
337
410
+
Trp
CCA
[ENA]
¢þ
>WENV182469093
OIPC01000849
[OIPC] human gut metagenome; human gut
339
423
+
Leu
CAG
[ENA]
¢þ
>WENV182469149
OIPC01009708
[OIPC] human gut metagenome; human gut
349
275
-
Arg
ACG
[ENA]
¢þ
>WENV182469143
OIPC01008595
[OIPC] human gut metagenome; human gut
350
262
-
Ser
CGA
[ENA]
¢þ
>WENV182469087
OIPC01000586
[OIPC] human gut metagenome; human gut
356
283
-
Lys
TTT
[ENA]
¢þ
>WENV182469160
OIPC01010702
[OIPC] human gut metagenome; human gut
356
283
-
Arg
CCT
[ENA]
¢þ
>WENV182469146
OIPC01009279
[OIPC] human gut metagenome; human gut
366
441
+
Asn
GTT
[ENA]
¢þ
>WENV182469129
OIPC01004424
[OIPC] human gut metagenome; human gut
368
454
+
Leu
GAG
[ENA]
¢þ
>WENV182469121
OIPC01003114
[OIPC] human gut metagenome; human gut
392
466
+
Ile
GAT
[ENA]
¢þ
>WENV182469115
OIPC01002401
[OIPC] human gut metagenome; human gut
417
333
-
Leu
CAA
[ENA]
¢þ
>WENV182469150
OIPC01009717
[OIPC] human gut metagenome; human gut
436
361
-
Asp
GTC
[ENA]
¢þ
>WENV182469128
OIPC01004353
[OIPC] human gut metagenome; human gut
446
519
+
Lys
CTT
[ENA]
¢þ
>WENV182469141
OIPC01007995
[OIPC] human gut metagenome; human gut
451
524
+
Ala
TGC
[ENA]
¢þ
>WENV182469102
OIPC01001680
[OIPC] human gut metagenome; human gut
457
533
+
Asp
GTC
[ENA]
¢þ
>WENV182469122
OIPC01003189
[OIPC] human gut metagenome; human gut
463
379
-
Tyr
GTA
[ENA]
¢þ
>WENV182469109
OIPC01002071
[OIPC] human gut metagenome; human gut
470
395
-
Pro
CGG
[ENA]
¢þ
>WENV182469119
OIPC01002834
[OIPC] human gut metagenome; human gut
541
466
-
Gly
GCC
[ENA]
¢þ
>WENV182469138
OIPC01006588
[OIPC] human gut metagenome; human gut
558
632
+
Glu
CTC
[ENA]
¢þ
>WENV182469108
OIPC01002071
[OIPC] human gut metagenome; human gut
570
500
-
Gln
CTG
[ENA]
¢þ
>WENV182469125
OIPC01003224
[OIPC] human gut metagenome; human gut
584
658
+
Arg
CCT
[ENA]
¢þ
>WENV182469105
OIPC01001948
[OIPC] human gut metagenome; human gut
587
663
+
Asp
GTC
[ENA]
¢þ
>WENV182469133
OIPC01005813
[OIPC] human gut metagenome; human gut
605
532
-
Gly
GCC
[ENA]
¢þ
>WENV182469135
OIPC01006126
[OIPC] human gut metagenome; human gut
613
539
-
Phe
GAA
[ENA]
¢þ
>WENV182469126
OIPC01003235
[OIPC] human gut metagenome; human gut
615
702
+
Ser
CGA
[ENA]
¢þ
>WENV182469131
OIPC01005270
[OIPC] human gut metagenome; human gut
636
710
+
Ala
CGC
[ENA]
¢þ
>WENV182469106
OIPC01001948
[OIPC] human gut metagenome; human gut
666
740
+
Gly
GCC
[ENA]
¢þ
>WENV182469136
OIPC01006233
[OIPC] human gut metagenome; human gut
669
594
-
Ala
TGC
[ENA]
¢þ
>WENV182469099
OIPC01001377
[OIPC] human gut metagenome; human gut
671
744
+
fMet
CAT
[ENA]
¢þ
>WENV182469130
OIPC01004863
[OIPC] human gut metagenome; human gut
702
627
-
Trp
CCA
[ENA]
¢þ
>WENV182469117
OIPC01002806
[OIPC] human gut metagenome; human gut
745
658
-
Ser
GCT
[ENA]
¢þ
>WENV182469118
OIPC01002823
[OIPC] human gut metagenome; human gut
761
833
+
Trp
CCA
[ENA]
¢þ
>WENV182469088
OIPC01000630
[OIPC] human gut metagenome; human gut
769
843
+
Ile
GAT
[ENA]
¢þ
>WENV182469116
OIPC01002653
[OIPC] human gut metagenome; human gut
786
709
-
Arg
TCT
[ENA]
¢þ
>WENV182469110
OIPC01002080
[OIPC] human gut metagenome; human gut
936
1011
+
Pro
TGG
[ENA]
¢þ
>WENV182469089
OIPC01000630
[OIPC] human gut metagenome; human gut
944
1018
+
Ala
TGC
[ENA]
¢þ
>WENV182469120
OIPC01003054
[OIPC] human gut metagenome; human gut
969
899
-
Gly
TCC
[ENA]
¢þ
>WENV182469049
OIPC01000065
[OIPC] human gut metagenome; human gut
996
921
-
Pro
CGG
[ENA]
¢þ
>WENV182469112
OIPC01002153
[OIPC] human gut metagenome; human gut
1020
1092
+
Glu
CTC
[ENA]
¢þ
>WENV182469100
OIPC01001386
[OIPC] human gut metagenome; human gut
1036
1122
+
Ser
TGA
[ENA]
¢þ
>WENV182469114
OIPC01002312
[OIPC] human gut metagenome; human gut
1037
962
-
Thr
CGT
[ENA]
¢þ
>WENV182469111
OIPC01002080
[OIPC] human gut metagenome; human gut
1038
1109
+
Gly
GCC
[ENA]
¢þ
>WENV182469113
OIPC01002272
[OIPC] human gut metagenome; human gut
1077
993
-
Leu
CAA
[ENA]
¢þ
>WENV182469103
OIPC01001690
[OIPC] human gut metagenome; human gut
1097
1010
-
Ser
TGA
[ENA]
¢þ
>WENV182469098
OIPC01001308
[OIPC] human gut metagenome; human gut
1137
1049
-
Leu
TAA
[ENA]
¢þ
>WENV182469101
OIPC01001386
[OIPC] human gut metagenome; human gut
1186
1274
+
Ser
GGA
[ENA]
¢þ
>WENV182469097
OIPC01001308
[OIPC] human gut metagenome; human gut
1229
1155
-
Val
TAC
[ENA]
¢þ
>WENV182469096
OIPC01001308
[OIPC] human gut metagenome; human gut
1339
1264
-
Asp
GTC
[ENA]
¢þ
>WENV182469079
OIPC01000407
[OIPC] human gut metagenome; human gut
1341
1414
+
Thr
CGT
[ENA]
¢þ
>WENV182469078
OIPC01000349
[OIPC] human gut metagenome; human gut
1635
1547
-
Ser
GCT
[ENA]
¢þ
>WENV182469084
OIPC01000468
[OIPC] human gut metagenome; human gut
1679
1604
-
Gly
GCC
[ENA]
¢þ
>WENV182469095
OIPC01001128
[OIPC] human gut metagenome; human gut
1682
1754
+
Gly
CCC
[ENA]
¢þ
>WENV182469048
OIPC01000065
[OIPC] human gut metagenome; human gut
1844
1769
-
Pro
TGG
[ENA]
¢þ
>WENV182469069
OIPC01000255
[OIPC] human gut metagenome; human gut
1865
1794
-
Gln
CTG
[ENA]
¢þ
>WENV182469080
OIPC01000436
[OIPC] human gut metagenome; human gut
1928
1854
-
Ala
GGC
[ENA]
¢þ
>WENV182469085
OIPC01000486
[OIPC] human gut metagenome; human gut
2073
1990
-
Leu
TAG
[ENA]
¢þ
>WENV182469073
OIPC01000315
[OIPC] human gut metagenome; human gut
2278
2354
+
Ile
GAT
[ENA]
¢þ
>WENV182469092
OIPC01000755
[OIPC] human gut metagenome; human gut
2366
2293
-
Lys
TTT
[ENA]
¢þ
>WENV182469074
OIPC01000315
[OIPC] human gut metagenome; human gut
2397
2472
+
Ala
TGC
[ENA]
¢þ
>WENV182469071
OIPC01000275
[OIPC] human gut metagenome; human gut
2444
2358
-
Ser
TGA
[ENA]
¢þ
>WENV182469091
OIPC01000755
[OIPC] human gut metagenome; human gut
2474
2402
-
Phe
GAA
[ENA]
¢þ
>WENV182469086
OIPC01000506
[OIPC] human gut metagenome; human gut
2495
2413
-
Leu
CAG
[ENA]
¢þ
>WENV182469090
OIPC01000649
[OIPC] human gut metagenome; human gut
2787
2716
-
Cys
GCA
[ENA]
¢þ
>WENV182469060
OIPC01000124
[OIPC] human gut metagenome; human gut
3356
3281
-
Pro
GGG
[ENA]
¢þ
>WENV182469032
OIPC01000018
[OIPC] human gut metagenome; human gut
3463
3390
-
Lys
TTT
[ENA]
¢þ
>WENV182469083
OIPC01000465
[OIPC] human gut metagenome; human gut
3552
3464
-
Leu
GAG
[ENA]
¢þ
>WENV182469053
OIPC01000077
[OIPC] human gut metagenome; human gut
3788
3716
-
Thr
GGT
[ENA]
¢þ
>WENV182469065
OIPC01000219
[OIPC] human gut metagenome; human gut
3837
3909
+
Arg
CCG
[ENA]
¢þ
>WENV182469075
OIPC01000331
[OIPC] human gut metagenome; human gut
3910
3984
+
Ile2
CAT
[ENA]
¢þ
>WENV182469062
OIPC01000137
[OIPC] human gut metagenome; human gut
4111
4038
-
Gly
GCC
[ENA]
¢þ
>WENV182469066
OIPC01000220
[OIPC] human gut metagenome; human gut
4215
4141
-
Asn
GTT
[ENA]
¢þ
>WENV182469072
OIPC01000282
[OIPC] human gut metagenome; human gut
4532
4606
+
Met
CAT
[ENA]
¢þ
>WENV182469055
OIPC01000100
[OIPC] human gut metagenome; human gut
4729
4813
+
Leu
CAA
[ENA]
¢þ
>WENV182469076
OIPC01000340
[OIPC] human gut metagenome; human gut
5126
5213
+
Ser
GCT
[ENA]
¢þ
>WENV182469067
OIPC01000227
[OIPC] human gut metagenome; human gut
5245
5157
-
Ser
GGA
[ENA]
¢þ
>WENV182469077
OIPC01000340
[OIPC] human gut metagenome; human gut
5271
5343
+
Glu
CTC
[ENA]
¢þ
>WENV182469070
OIPC01000275
[OIPC] human gut metagenome; human gut
5862
5934
+
Arg
CCT
[ENA]
¢þ
>WENV182469063
OIPC01000150
[OIPC] human gut metagenome; human gut
6061
6132
+
Gln
TTG
[ENA]
¢þ
>WENV182469050
OIPC01000066
[OIPC] human gut metagenome; human gut
6382
6457
+
Val
TAC
[ENA]
¢þ
>WENV182469059
OIPC01000124
[OIPC] human gut metagenome; human gut
6852
6924
+
Glu
TTC
[ENA]
¢þ
>WENV182469056
OIPC01000105
[OIPC] human gut metagenome; human gut
7746
7671
-
His
GTG
[ENA]
¢þ
>WENV182469064
OIPC01000185
[OIPC] human gut metagenome; human gut
8199
8287
+
Ser
GGA
[ENA]
¢þ
>WENV182469061
OIPC01000137
[OIPC] human gut metagenome; human gut
8652
8738
+
Leu
TAA
[ENA]
¢þ
>WENV182469057
OIPC01000113
[OIPC] human gut metagenome; human gut
10539
10613
+
Asn
GTT
[ENA]
¢þ
>WENV182469058
OIPC01000113
[OIPC] human gut metagenome; human gut
10748
10823
+
Val
TAC
[ENA]
¢þ
>WENV182469038
OIPC01000031
[OIPC] human gut metagenome; human gut
11493
11567
+
Met
CAT
[ENA]
¢þ
>WENV182469033
OIPC01000021
[OIPC] human gut metagenome; human gut
11833
11907
+
Arg
TCT
[ENA]
¢þ
>WENV182469054
OIPC01000092
[OIPC] human gut metagenome; human gut
11991
11904
-
Ser
CGA
[ENA]
¢þ
>WENV182469027
OIPC01000005
[OIPC] human gut metagenome; human gut
12956
13030
+
Sup
CTA
[ENA]
¢þ
>WENV182469044
OIPC01000040
[OIPC] human gut metagenome; human gut
14597
14685
+
Ser
GGA
[ENA]
¢þ
>WENV182469040
OIPC01000036
[OIPC] human gut metagenome; human gut
14851
14766
-
Ser
TGA
[ENA]
¢þ
>WENV182469051
OIPC01000073
[OIPC] human gut metagenome; human gut
15569
15495
-
Ala
GGC
[ENA]
¢þ
>WENV182469052
OIPC01000075
[OIPC] human gut metagenome; human gut
17877
17948
+
Gln
CTG
[ENA]
¢þ
>WENV182469042
OIPC01000038
[OIPC] human gut metagenome; human gut
22101
22172
+
Gln
TTG
[ENA]
¢þ
>WENV182469047
OIPC01000050
[OIPC] human gut metagenome; human gut
28530
28603
+
Trp
CCA
[ENA]
¢þ
>WENV182469043
OIPC01000039
[OIPC] human gut metagenome; human gut
30619
30692
+
Lys
CTT
[ENA]
¢þ
>WENV182469046
OIPC01000049
[OIPC] human gut metagenome; human gut
32168
32241
+
Thr
CGT
[ENA]
¢þ
>WENV182469045
OIPC01000042
[OIPC] human gut metagenome; human gut
36938
37012
+
Gly
CCC
[ENA]
¢þ
>WENV182469034
OIPC01000022
[OIPC] human gut metagenome; human gut
37075
37003
-
Cys
GCA
[ENA]
¢þ
>WENV182469037
OIPC01000024
[OIPC] human gut metagenome; human gut
37803
37887
+
Leu
CAA
[ENA]
¢þ
>WENV182469041
OIPC01000037
[OIPC] human gut metagenome; human gut
43790
43715
-
Pro
GGG
[ENA]
¢þ
>WENV182469039
OIPC01000031
[OIPC] human gut metagenome; human gut
49516
49589
+
Phe
GAA
[ENA]
¢þ
>WENV182469036
OIPC01000023
[OIPC] human gut metagenome; human gut
59557
59484
-
Trp
CCA
[ENA]
¢þ
>WENV182469035
OIPC01000023
[OIPC] human gut metagenome; human gut
60917
60845
-
Thr
GGT
[ENA]
¢þ
>WENV182469024
OIPC01000002
[OIPC] human gut metagenome; human gut
65161
65087
-
Thr
TGT
[ENA]
¢þ
>WENV182469029
OIPC01000011
[OIPC] human gut metagenome; human gut
69598
69671
+
Gly
GCC
[ENA]
¢þ
>WENV182469030
OIPC01000011
[OIPC] human gut metagenome; human gut
75114
75188
+
Asp
GTC
[ENA]
¢þ
>WENV182469025
OIPC01000003
[OIPC] human gut metagenome; human gut
79281
79209
-
Arg
CCT
[ENA]
¢þ
>WENV182469028
OIPC01000005
[OIPC] human gut metagenome; human gut
84096
84024
-
fMet
CAT
[ENA]
¢þ
>WENV182469023
OIPC01000001
[OIPC] human gut metagenome; human gut
94921
94849
-
Glu
TTC
[ENA]
¢þ
>WENV182469026
OIPC01000004
[OIPC] human gut metagenome; human gut
104940
104857
-
Tyr
GTA
[ENA]
¢þ
>WENV182469022
OIPC01000001
[OIPC] human gut metagenome; human gut
166067
165985
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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