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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OIPO] human gut metagenome; human gut
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182472439
OIPO01008878
[OIPO] human gut metagenome; human gut
2
76
+
Ile2
CAT
[ENA]
¢þ
>WENV182472418
OIPO01003435
[OIPO] human gut metagenome; human gut
8
81
+
Ala
TGC
[ENA]
¢þ
>WENV182472422
OIPO01004503
[OIPO] human gut metagenome; human gut
9
94
+
Ser
TGA
[ENA]
¢þ
>WENV182472421
OIPO01004481
[OIPO] human gut metagenome; human gut
48
120
+
Glu
CTC
[ENA]
¢þ
>WENV182472425
OIPO01006330
[OIPO] human gut metagenome; human gut
82
153
+
Trp
CCA
[ENA]
¢þ
>WENV182472438
OIPO01007252
[OIPO] human gut metagenome; human gut
102
31
-
Gln
TTG
[ENA]
¢þ
>WENV182472419
OIPO01003435
[OIPO] human gut metagenome; human gut
103
178
+
Ile
GAT
[ENA]
¢þ
>WENV182472353
OIPO01000145
[OIPO] human gut metagenome; human gut
112
27
-
Ser
TGA
[ENA]
¢þ
>WENV182472381
OIPO01000640
[OIPO] human gut metagenome; human gut
112
27
-
Ser
TGA
[ENA]
¢þ
>WENV182472427
OIPO01006435
[OIPO] human gut metagenome; human gut
115
41
-
Glu
CTC
[ENA]
¢þ
>WENV182472329
OIPO01000046
[OIPO] human gut metagenome; human gut
123
49
-
Arg
TCT
[ENA]
¢þ
>WENV182472433
OIPO01007051
[OIPO] human gut metagenome; human gut
133
50
-
Tyr
GTA
[ENA]
¢þ
>WENV182472407
OIPO01002040
[OIPO] human gut metagenome; human gut
134
59
-
Val
GAC
[ENA]
¢þ
>WENV182472426
OIPO01006435
[OIPO] human gut metagenome; human gut
192
117
-
Lys
CTT
[ENA]
¢þ
>WENV182472388
OIPO01000862
[OIPO] human gut metagenome; human gut
193
110
-
Leu
TAA
[ENA]
¢þ
>WENV182472363
OIPO01000194
[OIPO] human gut metagenome; human gut
200
127
-
Thr
CGT
[ENA]
¢þ
>WENV182472379
OIPO01000604
[OIPO] human gut metagenome; human gut
210
285
+
Gly
CCC
[ENA]
¢þ
>WENV182472328
OIPO01000045
[OIPO] human gut metagenome; human gut
213
129
-
Leu
CAA
[ENA]
¢þ
>WENV182472409
OIPO01002201
[OIPO] human gut metagenome; human gut
219
294
+
Arg
TCT
[ENA]
¢þ
>WENV182472432
OIPO01007051
[OIPO] human gut metagenome; human gut
234
162
-
Thr
TGT
[ENA]
¢þ
>WENV182472358
OIPO01000164
[OIPO] human gut metagenome; human gut
237
166
-
Gln
CTG
[ENA]
¢þ
>WENV182472437
OIPO01007252
[OIPO] human gut metagenome; human gut
244
170
-
His
GTG
[ENA]
¢þ
>WENV182472401
OIPO01001500
[OIPO] human gut metagenome; human gut
253
328
+
Arg
CCT
[ENA]
¢þ
>WENV182472420
OIPO01003435
[OIPO] human gut metagenome; human gut
271
344
+
Ala
TGC
[ENA]
¢þ
>WENV182472410
OIPO01002201
[OIPO] human gut metagenome; human gut
302
378
+
His
GTG
[ENA]
¢þ
>WENV182472436
OIPO01007252
[OIPO] human gut metagenome; human gut
323
249
-
Arg
TCT
[ENA]
¢þ
>WENV182472431
OIPO01007051
[OIPO] human gut metagenome; human gut
331
258
-
Glu
TTC
[ENA]
¢þ
>WENV182472429
OIPO01006989
[OIPO] human gut metagenome; human gut
340
267
-
Gly
CCC
[ENA]
¢þ
>WENV182472435
OIPO01007252
[OIPO] human gut metagenome; human gut
432
362
-
Gly
TCC
[ENA]
¢þ
>WENV182472430
OIPO01007051
[OIPO] human gut metagenome; human gut
451
378
-
Asn
GTT
[ENA]
¢þ
>WENV182472384
OIPO01000807
[OIPO] human gut metagenome; human gut
468
542
+
Ile
GAT
[ENA]
¢þ
>WENV182472440
OIPO01009827
[OIPO] human gut metagenome; human gut
493
412
-
Tyr
GTA
[ENA]
¢þ
>WENV182472365
OIPO01000208
[OIPO] human gut metagenome; human gut
495
421
-
Met
CAT
[ENA]
¢þ
>WENV182472434
OIPO01007252
[OIPO] human gut metagenome; human gut
513
439
-
Pro
TGG
[ENA]
¢þ
>WENV182472387
OIPO01000824
[OIPO] human gut metagenome; human gut
519
430
-
Ser
GGA
[ENA]
¢þ
>WENV182472412
OIPO01002503
[OIPO] human gut metagenome; human gut
529
613
+
Tyr
GTA
[ENA]
¢þ
>WENV182472371
OIPO01000342
[OIPO] human gut metagenome; human gut
536
452
-
Leu
CAG
[ENA]
¢þ
>WENV182472385
OIPO01000807
[OIPO] human gut metagenome; human gut
557
631
+
Ala
TGC
[ENA]
¢þ
>WENV182472346
OIPO01000123
[OIPO] human gut metagenome; human gut
562
635
+
Trp
CCA
[ENA]
¢þ
>WENV182472428
OIPO01006851
[OIPO] human gut metagenome; human gut
604
515
-
Ser
GCT
[ENA]
¢þ
>WENV182472423
OIPO01004731
[OIPO] human gut metagenome; human gut
606
532
-
Pro
CGG
[ENA]
¢þ
>WENV182472386
OIPO01000824
[OIPO] human gut metagenome; human gut
691
605
-
Ser
TGA
[ENA]
¢þ
>WENV182472424
OIPO01005133
[OIPO] human gut metagenome; human gut
730
658
-
Thr
GGT
[ENA]
¢þ
>WENV182472411
OIPO01002387
[OIPO] human gut metagenome; human gut
752
676
-
fMet
CAT
[ENA]
¢þ
>WENV182472394
OIPO01001185
[OIPO] human gut metagenome; human gut
913
987
+
Thr
TGT
[ENA]
¢þ
>WENV182472351
OIPO01000133
[OIPO] human gut metagenome; human gut
939
866
-
Trp
CCA
[ENA]
¢þ
>WENV182472403
OIPO01001586
[OIPO] human gut metagenome; human gut
956
1027
+
Gln
TTG
[ENA]
¢þ
>WENV182472416
OIPO01003209
[OIPO] human gut metagenome; human gut
979
1054
+
Phe
GAA
[ENA]
¢þ
>WENV182472368
OIPO01000239
[OIPO] human gut metagenome; human gut
983
1059
+
Met
CAT
[ENA]
¢þ
>WENV182472405
OIPO01001760
[OIPO] human gut metagenome; human gut
1030
1108
+
His
GTG
[ENA]
¢þ
>WENV182472406
OIPO01001960
[OIPO] human gut metagenome; human gut
1042
1133
+
Ser
GGA
[ENA]
¢þ
>WENV182472415
OIPO01002916
[OIPO] human gut metagenome; human gut
1045
971
-
Ala
TGC
[ENA]
¢þ
>WENV182472414
OIPO01002525
[OIPO] human gut metagenome; human gut
1055
983
-
Cys
GCA
[ENA]
¢þ
>WENV182472408
OIPO01002147
[OIPO] human gut metagenome; human gut
1074
1148
+
Ala
GGC
[ENA]
¢þ
>WENV182472417
OIPO01003335
[OIPO] human gut metagenome; human gut
1077
1002
-
Ala
TGC
[ENA]
¢þ
>WENV182472383
OIPO01000788
[OIPO] human gut metagenome; human gut
1099
1174
+
Pro
TGG
[ENA]
¢þ
>WENV182472369
OIPO01000239
[OIPO] human gut metagenome; human gut
1151
1222
+
Glu
TTC
[ENA]
¢þ
>WENV182472413
OIPO01002525
[OIPO] human gut metagenome; human gut
1164
1091
-
Asn
GTT
[ENA]
¢þ
>WENV182472391
OIPO01001054
[OIPO] human gut metagenome; human gut
1277
1204
-
Pro
CGG
[ENA]
¢þ
>WENV182472402
OIPO01001540
[OIPO] human gut metagenome; human gut
1296
1369
+
fMet
CAT
[ENA]
¢þ
>WENV182472378
OIPO01000579
[OIPO] human gut metagenome; human gut
1319
1244
-
Thr
CGT
[ENA]
¢þ
>WENV182472392
OIPO01001064
[OIPO] human gut metagenome; human gut
1337
1412
+
Ala
CGC
[ENA]
¢þ
>WENV182472390
OIPO01001054
[OIPO] human gut metagenome; human gut
1380
1307
-
Gln
CTG
[ENA]
¢þ
>WENV182472395
OIPO01001221
[OIPO] human gut metagenome; human gut
1513
1587
+
Pro
GGG
[ENA]
¢þ
>WENV182472380
OIPO01000612
[OIPO] human gut metagenome; human gut
1637
1713
+
Arg
ACG
[ENA]
¢þ
>WENV182472398
OIPO01001287
[OIPO] human gut metagenome; human gut
1666
1749
+
Tyr
GTA
[ENA]
¢þ
>WENV182472377
OIPO01000521
[OIPO] human gut metagenome; human gut
1698
1623
-
Thr
GGT
[ENA]
¢þ
>WENV182472400
OIPO01001482
[OIPO] human gut metagenome; human gut
1706
1781
+
Trp
CCA
[ENA]
¢þ
>WENV182472376
OIPO01000521
[OIPO] human gut metagenome; human gut
1778
1702
-
Asp
GTC
[ENA]
¢þ
>WENV182472404
OIPO01001614
[OIPO] human gut metagenome; human gut
1843
1770
-
Gly
CCC
[ENA]
¢þ
>WENV182472375
OIPO01000521
[OIPO] human gut metagenome; human gut
1857
1782
-
Val
TAC
[ENA]
¢þ
>WENV182472374
OIPO01000521
[OIPO] human gut metagenome; human gut
1940
1865
-
Gly
GCC
[ENA]
¢þ
>WENV182472399
OIPO01001419
[OIPO] human gut metagenome; human gut
2074
2001
-
Lys
TTT
[ENA]
¢þ
>WENV182472397
OIPO01001232
[OIPO] human gut metagenome; human gut
2149
2074
-
Lys
CTT
[ENA]
¢þ
>WENV182472372
OIPO01000373
[OIPO] human gut metagenome; human gut
2217
2291
+
Ile2
CAT
[ENA]
¢þ
>WENV182472396
OIPO01001232
[OIPO] human gut metagenome; human gut
2227
2153
-
Glu
CTC
[ENA]
¢þ
>WENV182472350
OIPO01000133
[OIPO] human gut metagenome; human gut
2299
2227
-
Thr
GGT
[ENA]
¢þ
>WENV182472349
OIPO01000133
[OIPO] human gut metagenome; human gut
2398
2315
-
Tyr
GTA
[ENA]
¢þ
>WENV182472393
OIPO01001078
[OIPO] human gut metagenome; human gut
2424
2343
-
Leu
TAG
[ENA]
¢þ
>WENV182472348
OIPO01000133
[OIPO] human gut metagenome; human gut
2542
2468
-
Thr
TGT
[ENA]
¢þ
>WENV182472370
OIPO01000269
[OIPO] human gut metagenome; human gut
2581
2660
+
Leu
CAA
[ENA]
¢þ
>WENV182472389
OIPO01000883
[OIPO] human gut metagenome; human gut
2818
2734
-
Leu
TAA
[ENA]
¢þ
>WENV182472373
OIPO01000414
[OIPO] human gut metagenome; human gut
2923
2840
-
Leu
GAG
[ENA]
¢þ
>WENV182472362
OIPO01000191
[OIPO] human gut metagenome; human gut
2963
3053
+
Ser
CGA
[ENA]
¢þ
>WENV182472382
OIPO01000742
[OIPO] human gut metagenome; human gut
3023
2935
-
Ser
GGA
[ENA]
¢þ
>WENV182472364
OIPO01000201
[OIPO] human gut metagenome; human gut
3363
3439
+
Asn
GTT
[ENA]
¢þ
>WENV182472326
OIPO01000040
[OIPO] human gut metagenome; human gut
5345
5419
+
Thr
TGT
[ENA]
¢þ
>WENV182472366
OIPO01000210
[OIPO] human gut metagenome; human gut
5992
5918
-
Asp
GTC
[ENA]
¢þ
>WENV182472347
OIPO01000132
[OIPO] human gut metagenome; human gut
7605
7532
-
Gly
CCC
[ENA]
¢þ
>WENV182472301
OIPO01000004
[OIPO] human gut metagenome; human gut
8811
8894
+
Tyr
GTA
[ENA]
¢þ
>WENV182472367
OIPO01000228
[OIPO] human gut metagenome; human gut
9186
9110
-
Arg
CCT
[ENA]
¢þ
>WENV182472319
OIPO01000024
[OIPO] human gut metagenome; human gut
9650
9725
+
Pro
GGG
[ENA]
¢þ
>WENV182472342
OIPO01000086
[OIPO] human gut metagenome; human gut
10439
10511
+
Cys
GCA
[ENA]
¢þ
>WENV182472355
OIPO01000155
[OIPO] human gut metagenome; human gut
10940
11015
+
Ile2
CAT
[ENA]
¢þ
>WENV182472318
OIPO01000021
[OIPO] human gut metagenome; human gut
11683
11612
-
Gln
TTG
[ENA]
¢þ
>WENV182472321
OIPO01000030
[OIPO] human gut metagenome; human gut
12535
12608
+
Phe
GAA
[ENA]
¢þ
>WENV182472311
OIPO01000012
[OIPO] human gut metagenome; human gut
12611
12537
-
Ala
GGC
[ENA]
¢þ
>WENV182472322
OIPO01000031
[OIPO] human gut metagenome; human gut
13164
13238
+
Asn
GTT
[ENA]
¢þ
>WENV182472361
OIPO01000175
[OIPO] human gut metagenome; human gut
13189
13262
+
Cys
GCA
[ENA]
¢þ
>WENV182472323
OIPO01000031
[OIPO] human gut metagenome; human gut
13262
13336
+
Asn
GTT
[ENA]
¢þ
>WENV182472359
OIPO01000165
[OIPO] human gut metagenome; human gut
13303
13229
-
Thr
TGT
[ENA]
¢þ
>WENV182472357
OIPO01000155
[OIPO] human gut metagenome; human gut
13366
13273
-
Ser
GCT
[ENA]
¢þ
>WENV182472356
OIPO01000155
[OIPO] human gut metagenome; human gut
13486
13399
-
Ser
TGA
[ENA]
¢þ
>WENV182472344
OIPO01000110
[OIPO] human gut metagenome; human gut
13682
13755
+
Trp
CCA
[ENA]
¢þ
>WENV182472360
OIPO01000171
[OIPO] human gut metagenome; human gut
15007
14931
-
Arg
CCG
[ENA]
¢þ
>WENV182472352
OIPO01000141
[OIPO] human gut metagenome; human gut
16666
16738
+
Arg
CCG
[ENA]
¢þ
>WENV182472345
OIPO01000115
[OIPO] human gut metagenome; human gut
18155
18228
+
Thr
CGT
[ENA]
¢þ
>WENV182472331
OIPO01000055
[OIPO] human gut metagenome; human gut
19760
19833
+
Lys
CTT
[ENA]
¢þ
>WENV182472332
OIPO01000055
[OIPO] human gut metagenome; human gut
19858
19931
+
Lys
CTT
[ENA]
¢þ
>WENV182472333
OIPO01000055
[OIPO] human gut metagenome; human gut
19952
20025
+
Lys
CTT
[ENA]
¢þ
>WENV182472354
OIPO01000150
[OIPO] human gut metagenome; human gut
19996
20078
+
Leu
TAG
[ENA]
¢þ
>WENV182472313
OIPO01000013
[OIPO] human gut metagenome; human gut
21991
21918
-
Pro
CGG
[ENA]
¢þ
>WENV182472312
OIPO01000013
[OIPO] human gut metagenome; human gut
22173
22248
+
Phe
GAA
[ENA]
¢þ
>WENV182472343
OIPO01000097
[OIPO] human gut metagenome; human gut
25795
25870
+
Pro
TGG
[ENA]
¢þ
>WENV182472330
OIPO01000048
[OIPO] human gut metagenome; human gut
31206
31132
-
Ala
GGC
[ENA]
¢þ
>WENV182472337
OIPO01000076
[OIPO] human gut metagenome; human gut
31327
31414
+
Ser
GCT
[ENA]
¢þ
>WENV182472338
OIPO01000076
[OIPO] human gut metagenome; human gut
31468
31540
+
Glu
CTC
[ENA]
¢þ
>WENV182472339
OIPO01000076
[OIPO] human gut metagenome; human gut
31556
31629
+
Lys
CTT
[ENA]
¢þ
>WENV182472341
OIPO01000082
[OIPO] human gut metagenome; human gut
37321
37236
-
Leu
TAA
[ENA]
¢þ
>WENV182472340
OIPO01000082
[OIPO] human gut metagenome; human gut
37410
37337
-
Gly
GCC
[ENA]
¢þ
>WENV182472316
OIPO01000015
[OIPO] human gut metagenome; human gut
37999
38072
+
Phe
GAA
[ENA]
¢þ
>WENV182472304
OIPO01000007
[OIPO] human gut metagenome; human gut
38963
39037
+
Ile2
CAT
[ENA]
¢þ
>WENV182472336
OIPO01000063
[OIPO] human gut metagenome; human gut
44763
44836
+
Trp
CCA
[ENA]
¢þ
>WENV182472335
OIPO01000060
[OIPO] human gut metagenome; human gut
46228
46301
+
Lys
TTT
[ENA]
¢þ
>WENV182472317
OIPO01000016
[OIPO] human gut metagenome; human gut
46312
46384
+
Glu
TTC
[ENA]
¢þ
>WENV182472334
OIPO01000059
[OIPO] human gut metagenome; human gut
49155
49081
-
Glu
TTC
[ENA]
¢þ
>WENV182472327
OIPO01000045
[OIPO] human gut metagenome; human gut
55168
55240
+
Glu
TTC
[ENA]
¢þ
>WENV182472325
OIPO01000033
[OIPO] human gut metagenome; human gut
55474
55547
+
fMet
CAT
[ENA]
¢þ
>WENV182472306
OIPO01000008
[OIPO] human gut metagenome; human gut
57863
57791
-
Arg
CCT
[ENA]
¢þ
>WENV182472324
OIPO01000032
[OIPO] human gut metagenome; human gut
58239
58321
+
Leu
TAG
[ENA]
¢þ
>WENV182472308
OIPO01000009
[OIPO] human gut metagenome; human gut
68727
68639
-
Ser
GGA
[ENA]
¢þ
>WENV182472310
OIPO01000011
[OIPO] human gut metagenome; human gut
68991
69065
+
His
GTG
[ENA]
¢þ
>WENV182472303
OIPO01000005
[OIPO] human gut metagenome; human gut
73473
73399
-
Met
CAT
[ENA]
¢þ
>WENV182472302
OIPO01000005
[OIPO] human gut metagenome; human gut
73608
73534
-
Met
CAT
[ENA]
¢þ
>WENV182472320
OIPO01000029
[OIPO] human gut metagenome; human gut
76875
76802
-
Glu
CTC
[ENA]
¢þ
>WENV182472307
OIPO01000009
[OIPO] human gut metagenome; human gut
93071
93000
-
Gln
CTG
[ENA]
¢þ
>WENV182472305
OIPO01000007
[OIPO] human gut metagenome; human gut
98943
98872
-
Gln
TTG
[ENA]
¢þ
>WENV182472314
OIPO01000014
[OIPO] human gut metagenome; human gut
105937
106010
+
Gly
GCC
[ENA]
¢þ
>WENV182472315
OIPO01000014
[OIPO] human gut metagenome; human gut
106026
106111
+
Leu
TAA
[ENA]
¢þ
>WENV182472309
OIPO01000010
[OIPO] human gut metagenome; human gut
106330
106242
-
Ser
GGA
[ENA]
¢þ
>WENV182472300
OIPO01000003
[OIPO] human gut metagenome; human gut
114537
114463
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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