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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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HOW TO USE
tRNA gene List
[OIQD] human gut metagenome; human gut
HIT:
134 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182475891
OIQD01007268
[OIQD] human gut metagenome; human gut
7
81
+
Arg
TCT
[ENA]
¢þ
>WENV182475786
OIQD01000136
[OIQD] human gut metagenome; human gut
35
110
+
Val
TAC
[ENA]
¢þ
>WENV182475900
OIQD01008296
[OIQD] human gut metagenome; human gut
51
125
+
Glu
TTC
[ENA]
¢þ
>WENV182475899
OIQD01008177
[OIQD] human gut metagenome; human gut
59
134
+
Lys
CTT
[ENA]
¢þ
>WENV182475799
OIQD01000369
[OIQD] human gut metagenome; human gut
69
153
+
Leu
TAA
[ENA]
¢þ
>WENV182475877
OIQD01005584
[OIQD] human gut metagenome; human gut
82
10
-
Cys
GCA
[ENA]
¢þ
>WENV182475884
OIQD01006220
[OIQD] human gut metagenome; human gut
87
14
-
Arg
CCT
[ENA]
¢þ
>WENV182475904
OIQD01008696
[OIQD] human gut metagenome; human gut
101
17
-
Tyr
GTA
[ENA]
¢þ
>WENV182475843
OIQD01001858
[OIQD] human gut metagenome; human gut
118
46
-
Asn
GTT
[ENA]
¢þ
>WENV182475901
OIQD01008296
[OIQD] human gut metagenome; human gut
131
206
+
Val
TAC
[ENA]
¢þ
>WENV182475837
OIQD01001442
[OIQD] human gut metagenome; human gut
138
63
-
Phe
GAA
[ENA]
¢þ
>WENV182475896
OIQD01007646
[OIQD] human gut metagenome; human gut
142
69
-
Phe
GAA
[ENA]
¢þ
>WENV182475898
OIQD01008056
[OIQD] human gut metagenome; human gut
150
225
+
Ala
TGC
[ENA]
¢þ
>WENV182475908
OIQD01009057
[OIQD] human gut metagenome; human gut
152
71
-
Leu
TAG
[ENA]
¢þ
>WENV182475902
OIQD01008529
[OIQD] human gut metagenome; human gut
156
248
+
Ser
GCT
[ENA]
¢þ
>WENV182475871
OIQD01005191
[OIQD] human gut metagenome; human gut
197
122
-
Val
GAC
[ENA]
¢þ
>WENV182475851
OIQD01002515
[OIQD] human gut metagenome; human gut
198
122
-
Val
CAC
[ENA]
¢þ
>WENV182475903
OIQD01008696
[OIQD] human gut metagenome; human gut
206
131
-
Thr
TGT
[ENA]
¢þ
>WENV182475836
OIQD01001424
[OIQD] human gut metagenome; human gut
212
139
-
fMet
CAT
[ENA]
¢þ
>WENV182475879
OIQD01005791
[OIQD] human gut metagenome; human gut
214
291
+
Asp
GTC
[ENA]
¢þ
>WENV182475872
OIQD01005581
[OIQD] human gut metagenome; human gut
215
290
+
Pro
TGG
[ENA]
¢þ
>WENV182475888
OIQD01007105
[OIQD] human gut metagenome; human gut
216
290
+
Pro
GGG
[ENA]
¢þ
>WENV182475866
OIQD01003815
[OIQD] human gut metagenome; human gut
229
304
+
Ala
TGC
[ENA]
¢þ
>WENV182475907
OIQD01009057
[OIQD] human gut metagenome; human gut
244
169
-
Lys
TTT
[ENA]
¢þ
>WENV182475833
OIQD01001243
[OIQD] human gut metagenome; human gut
253
180
-
Lys
TTT
[ENA]
¢þ
>WENV182475895
OIQD01007646
[OIQD] human gut metagenome; human gut
256
181
-
fMet
CAT
[ENA]
¢þ
>WENV182475886
OIQD01006482
[OIQD] human gut metagenome; human gut
264
338
+
Asn
GTT
[ENA]
¢þ
>WENV182475897
OIQD01007856
[OIQD] human gut metagenome; human gut
271
197
-
Thr
TGT
[ENA]
¢þ
>WENV182475906
OIQD01009057
[OIQD] human gut metagenome; human gut
323
249
-
Gln
TTG
[ENA]
¢þ
>WENV182475873
OIQD01005581
[OIQD] human gut metagenome; human gut
325
395
+
Gly
TCC
[ENA]
¢þ
>WENV182475867
OIQD01003815
[OIQD] human gut metagenome; human gut
329
405
+
Ile
GAT
[ENA]
¢þ
>WENV182475824
OIQD01000851
[OIQD] human gut metagenome; human gut
337
261
-
His
GTG
[ENA]
¢þ
>WENV182475847
OIQD01002092
[OIQD] human gut metagenome; human gut
376
451
+
Gly
CCC
[ENA]
¢þ
>WENV182475865
OIQD01003712
[OIQD] human gut metagenome; human gut
378
452
+
Ile
GAT
[ENA]
¢þ
>WENV182475880
OIQD01005991
[OIQD] human gut metagenome; human gut
388
462
+
Asn
GTT
[ENA]
¢þ
>WENV182475842
OIQD01001858
[OIQD] human gut metagenome; human gut
403
331
-
Glu
TTC
[ENA]
¢þ
>WENV182475874
OIQD01005581
[OIQD] human gut metagenome; human gut
417
491
+
Arg
TCT
[ENA]
¢þ
>WENV182475823
OIQD01000851
[OIQD] human gut metagenome; human gut
420
345
-
Arg
TCT
[ENA]
¢þ
>WENV182475905
OIQD01009057
[OIQD] human gut metagenome; human gut
423
348
-
His
GTG
[ENA]
¢þ
>WENV182475892
OIQD01007308
[OIQD] human gut metagenome; human gut
428
354
-
Gly
TCC
[ENA]
¢þ
>WENV182475889
OIQD01007175
[OIQD] human gut metagenome; human gut
457
530
+
Gln
CTG
[ENA]
¢þ
>WENV182475881
OIQD01005991
[OIQD] human gut metagenome; human gut
466
538
+
Glu
TTC
[ENA]
¢þ
>WENV182475875
OIQD01005581
[OIQD] human gut metagenome; human gut
496
570
+
His
GTG
[ENA]
¢þ
>WENV182475864
OIQD01003690
[OIQD] human gut metagenome; human gut
513
420
-
Ser
GCT
[ENA]
¢þ
>WENV182475894
OIQD01007646
[OIQD] human gut metagenome; human gut
526
454
-
Thr
TGT
[ENA]
¢þ
>WENV182475857
OIQD01002921
[OIQD] human gut metagenome; human gut
548
460
-
Ser
GGA
[ENA]
¢þ
>WENV182475890
OIQD01007175
[OIQD] human gut metagenome; human gut
560
633
+
Pro
CGG
[ENA]
¢þ
>WENV182475882
OIQD01005991
[OIQD] human gut metagenome; human gut
564
635
+
Cys
GCA
[ENA]
¢þ
>WENV182475855
OIQD01002832
[OIQD] human gut metagenome; human gut
565
494
-
Gln
TTG
[ENA]
¢þ
>WENV182475876
OIQD01005581
[OIQD] human gut metagenome; human gut
589
663
+
Gln
TTG
[ENA]
¢þ
>WENV182475885
OIQD01006425
[OIQD] human gut metagenome; human gut
604
695
+
Ser
GGA
[ENA]
¢þ
>WENV182475893
OIQD01007646
[OIQD] human gut metagenome; human gut
622
551
-
Glu
TTC
[ENA]
¢þ
>WENV182475793
OIQD01000257
[OIQD] human gut metagenome; human gut
623
537
-
Leu
CAG
[ENA]
¢þ
>WENV182475863
OIQD01003690
[OIQD] human gut metagenome; human gut
633
546
-
Ser
TGA
[ENA]
¢þ
>WENV182475868
OIQD01004711
[OIQD] human gut metagenome; human gut
642
567
-
Thr
CGT
[ENA]
¢þ
>WENV182475887
OIQD01006648
[OIQD] human gut metagenome; human gut
662
586
-
Pro
GGG
[ENA]
¢þ
>WENV182475883
OIQD01006035
[OIQD] human gut metagenome; human gut
672
746
+
Ile2
CAT
[ENA]
¢þ
>WENV182475869
OIQD01004932
[OIQD] human gut metagenome; human gut
752
678
-
Ala
GGC
[ENA]
¢þ
>WENV182475878
OIQD01005662
[OIQD] human gut metagenome; human gut
812
736
-
Arg
ACG
[ENA]
¢þ
>WENV182475838
OIQD01001470
[OIQD] human gut metagenome; human gut
838
910
+
Cys
GCA
[ENA]
¢þ
>WENV182475809
OIQD01000440
[OIQD] human gut metagenome; human gut
892
807
-
Ser
TGA
[ENA]
¢þ
>WENV182475835
OIQD01001414
[OIQD] human gut metagenome; human gut
959
885
-
Ala
GGC
[ENA]
¢þ
>WENV182475859
OIQD01003196
[OIQD] human gut metagenome; human gut
971
1052
+
Leu
TAG
[ENA]
¢þ
>WENV182475870
OIQD01005153
[OIQD] human gut metagenome; human gut
1014
942
-
Thr
GGT
[ENA]
¢þ
>WENV182475829
OIQD01001007
[OIQD] human gut metagenome; human gut
1053
1126
+
Lys
TTT
[ENA]
¢þ
>WENV182475853
OIQD01002658
[OIQD] human gut metagenome; human gut
1064
992
-
Pro
TGG
[ENA]
¢þ
>WENV182475861
OIQD01003513
[OIQD] human gut metagenome; human gut
1354
1429
+
Ala
GGC
[ENA]
¢þ
>WENV182475792
OIQD01000246
[OIQD] human gut metagenome; human gut
1434
1362
-
Arg
CCT
[ENA]
¢þ
>WENV182475862
OIQD01003578
[OIQD] human gut metagenome; human gut
1451
1526
+
Ile2
CAT
[ENA]
¢þ
>WENV182475832
OIQD01001061
[OIQD] human gut metagenome; human gut
1466
1542
+
Arg
CCG
[ENA]
¢þ
>WENV182475839
OIQD01001634
[OIQD] human gut metagenome; human gut
1565
1638
+
Gly
GCC
[ENA]
¢þ
>WENV182475856
OIQD01002900
[OIQD] human gut metagenome; human gut
1622
1697
+
Gly
CCC
[ENA]
¢þ
>WENV182475814
OIQD01000524
[OIQD] human gut metagenome; human gut
1632
1706
+
Met
CAT
[ENA]
¢þ
>WENV182475830
OIQD01001060
[OIQD] human gut metagenome; human gut
1683
1759
+
Ile
GAT
[ENA]
¢þ
>WENV182475860
OIQD01003281
[OIQD] human gut metagenome; human gut
1689
1604
-
Ser
TGA
[ENA]
¢þ
>WENV182475854
OIQD01002677
[OIQD] human gut metagenome; human gut
1709
1636
-
Trp
CCA
[ENA]
¢þ
>WENV182475849
OIQD01002125
[OIQD] human gut metagenome; human gut
1786
1713
-
Asp
GTC
[ENA]
¢þ
>WENV182475831
OIQD01001060
[OIQD] human gut metagenome; human gut
1788
1862
+
Ala
TGC
[ENA]
¢þ
>WENV182475846
OIQD01002053
[OIQD] human gut metagenome; human gut
1828
1901
+
Lys
CTT
[ENA]
¢þ
>WENV182475841
OIQD01001858
[OIQD] human gut metagenome; human gut
1853
1767
-
Leu
TAA
[ENA]
¢þ
>WENV182475858
OIQD01002959
[OIQD] human gut metagenome; human gut
1880
1802
-
His
GTG
[ENA]
¢þ
>WENV182475844
OIQD01001879
[OIQD] human gut metagenome; human gut
1918
1993
+
Gly
GCC
[ENA]
¢þ
>WENV182475852
OIQD01002527
[OIQD] human gut metagenome; human gut
2014
1935
-
Leu
CAA
[ENA]
¢þ
>WENV182475845
OIQD01001879
[OIQD] human gut metagenome; human gut
2022
2096
+
Cys
GCA
[ENA]
¢þ
>WENV182475827
OIQD01000919
[OIQD] human gut metagenome; human gut
2096
2168
+
Cys
GCA
[ENA]
¢þ
>WENV182475797
OIQD01000310
[OIQD] human gut metagenome; human gut
2108
2035
-
fMet
CAT
[ENA]
¢þ
>WENV182475802
OIQD01000377
[OIQD] human gut metagenome; human gut
2200
2128
-
Glu
CTC
[ENA]
¢þ
>WENV182475840
OIQD01001741
[OIQD] human gut metagenome; human gut
2219
2148
-
Gln
CTG
[ENA]
¢þ
>WENV182475815
OIQD01000525
[OIQD] human gut metagenome; human gut
2280
2195
-
Tyr
GTA
[ENA]
¢þ
>WENV182475801
OIQD01000377
[OIQD] human gut metagenome; human gut
2365
2278
-
Ser
GCT
[ENA]
¢þ
>WENV182475850
OIQD01002143
[OIQD] human gut metagenome; human gut
2404
2330
-
Ile2
CAT
[ENA]
¢þ
>WENV182475803
OIQD01000378
[OIQD] human gut metagenome; human gut
2418
2344
-
Arg
TCT
[ENA]
¢þ
>WENV182475828
OIQD01000958
[OIQD] human gut metagenome; human gut
2441
2529
+
Ser
CGA
[ENA]
¢þ
>WENV182475848
OIQD01002125
[OIQD] human gut metagenome; human gut
2467
2396
-
Cys
GCA
[ENA]
¢þ
>WENV182475817
OIQD01000624
[OIQD] human gut metagenome; human gut
2518
2435
-
Tyr
GTA
[ENA]
¢þ
>WENV182475816
OIQD01000536
[OIQD] human gut metagenome; human gut
2645
2572
-
Gly
CCC
[ENA]
¢þ
>WENV182475813
OIQD01000509
[OIQD] human gut metagenome; human gut
2664
2735
+
Gln
TTG
[ENA]
¢þ
>WENV182475806
OIQD01000420
[OIQD] human gut metagenome; human gut
2814
2889
+
Trp
CCA
[ENA]
¢þ
>WENV182475825
OIQD01000858
[OIQD] human gut metagenome; human gut
2845
2918
+
Thr
CGT
[ENA]
¢þ
>WENV182475790
OIQD01000192
[OIQD] human gut metagenome; human gut
2863
2789
-
Asp
GTC
[ENA]
¢þ
>WENV182475810
OIQD01000447
[OIQD] human gut metagenome; human gut
2934
3018
+
Leu
CAA
[ENA]
¢þ
>WENV182475807
OIQD01000420
[OIQD] human gut metagenome; human gut
3066
3142
+
Asp
GTC
[ENA]
¢þ
>WENV182475820
OIQD01000832
[OIQD] human gut metagenome; human gut
3086
3162
+
Met
CAT
[ENA]
¢þ
>WENV182475800
OIQD01000376
[OIQD] human gut metagenome; human gut
3090
3008
-
Leu
TAG
[ENA]
¢þ
>WENV182475808
OIQD01000420
[OIQD] human gut metagenome; human gut
3146
3221
+
Thr
GGT
[ENA]
¢þ
>WENV182475834
OIQD01001326
[OIQD] human gut metagenome; human gut
3233
3150
-
Leu
GAG
[ENA]
¢þ
>WENV182475821
OIQD01000832
[OIQD] human gut metagenome; human gut
3254
3325
+
Glu
TTC
[ENA]
¢þ
>WENV182475822
OIQD01000845
[OIQD] human gut metagenome; human gut
3334
3260
-
Thr
TGT
[ENA]
¢þ
>WENV182475796
OIQD01000302
[OIQD] human gut metagenome; human gut
3458
3385
-
Thr
CGT
[ENA]
¢þ
>WENV182475826
OIQD01000861
[OIQD] human gut metagenome; human gut
3478
3551
+
Lys
CTT
[ENA]
¢þ
>WENV182475812
OIQD01000448
[OIQD] human gut metagenome; human gut
3496
3420
-
Asn
GTT
[ENA]
¢þ
>WENV182475811
OIQD01000448
[OIQD] human gut metagenome; human gut
3610
3536
-
Glu
CTC
[ENA]
¢þ
>WENV182475805
OIQD01000409
[OIQD] human gut metagenome; human gut
3784
3857
+
Gly
CCC
[ENA]
¢þ
>WENV182475819
OIQD01000822
[OIQD] human gut metagenome; human gut
3900
3824
-
fMet
CAT
[ENA]
¢þ
>WENV182475785
OIQD01000063
[OIQD] human gut metagenome; human gut
4561
4487
-
His
GTG
[ENA]
¢þ
>WENV182475818
OIQD01000770
[OIQD] human gut metagenome; human gut
4734
4661
-
Pro
CGG
[ENA]
¢þ
>WENV182475795
OIQD01000298
[OIQD] human gut metagenome; human gut
4940
4866
-
Asp
GTC
[ENA]
¢þ
>WENV182475782
OIQD01000018
[OIQD] human gut metagenome; human gut
5054
5127
+
Trp
CCA
[ENA]
¢þ
>WENV182475794
OIQD01000298
[OIQD] human gut metagenome; human gut
5070
4996
-
Asp
GTC
[ENA]
¢þ
>WENV182475804
OIQD01000404
[OIQD] human gut metagenome; human gut
5116
5044
-
Glu
TTC
[ENA]
¢þ
>WENV182475775
OIQD01000001
[OIQD] human gut metagenome; human gut
5309
5381
+
Arg
CCT
[ENA]
¢þ
>WENV182475781
OIQD01000015
[OIQD] human gut metagenome; human gut
5434
5510
+
Met
CAT
[ENA]
¢þ
>WENV182475784
OIQD01000036
[OIQD] human gut metagenome; human gut
6482
6411
-
Gln
TTG
[ENA]
¢þ
>WENV182475788
OIQD01000157
[OIQD] human gut metagenome; human gut
6505
6577
+
Glu
TTC
[ENA]
¢þ
>WENV182475798
OIQD01000368
[OIQD] human gut metagenome; human gut
6924
6842
-
Leu
TAG
[ENA]
¢þ
>WENV182475789
OIQD01000181
[OIQD] human gut metagenome; human gut
7660
7587
-
Phe
GAA
[ENA]
¢þ
>WENV182475791
OIQD01000198
[OIQD] human gut metagenome; human gut
7902
7828
-
Ile2
CAT
[ENA]
¢þ
>WENV182475783
OIQD01000022
[OIQD] human gut metagenome; human gut
8307
8378
+
Gln
CTG
[ENA]
¢þ
>WENV182475787
OIQD01000143
[OIQD] human gut metagenome; human gut
8351
8425
+
Ala
GGC
[ENA]
¢þ
>WENV182475778
OIQD01000006
[OIQD] human gut metagenome; human gut
15157
15083
-
Thr
TGT
[ENA]
¢þ
>WENV182475780
OIQD01000009
[OIQD] human gut metagenome; human gut
20291
20366
+
Pro
GGG
[ENA]
¢þ
>WENV182475776
OIQD01000003
[OIQD] human gut metagenome; human gut
26594
26668
+
Asn
GTT
[ENA]
¢þ
>WENV182475779
OIQD01000007
[OIQD] human gut metagenome; human gut
30157
30084
-
Lys
TTT
[ENA]
¢þ
>WENV182475777
OIQD01000005
[OIQD] human gut metagenome; human gut
42059
42141
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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