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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OIQN] human gut metagenome; human gut
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182478372
OIQN01000274
[OIQN] human gut metagenome; human gut
7
91
+
Tyr
GTA
[ENA]
¢þ
>WENV182478404
OIQN01002036
[OIQN] human gut metagenome; human gut
42
118
+
Asp
GTC
[ENA]
¢þ
>WENV182478399
OIQN01001398
[OIQN] human gut metagenome; human gut
101
27
-
Ile2
CAT
[ENA]
¢þ
>WENV182478412
OIQN01004097
[OIQN] human gut metagenome; human gut
107
33
-
Glu
CTC
[ENA]
¢þ
>WENV182478405
OIQN01002036
[OIQN] human gut metagenome; human gut
124
198
+
Glu
TTC
[ENA]
¢þ
>WENV182478410
OIQN01003351
[OIQN] human gut metagenome; human gut
124
198
+
Cys
GCA
[ENA]
¢þ
>WENV182478375
OIQN01000283
[OIQN] human gut metagenome; human gut
129
203
+
Ile2
CAT
[ENA]
¢þ
>WENV182478388
OIQN01000727
[OIQN] human gut metagenome; human gut
140
57
-
Leu
TAG
[ENA]
¢þ
>WENV182478361
OIQN01000138
[OIQN] human gut metagenome; human gut
178
252
+
Thr
TGT
[ENA]
¢þ
>WENV182478393
OIQN01001009
[OIQN] human gut metagenome; human gut
197
123
-
Pro
GGG
[ENA]
¢þ
>WENV182478398
OIQN01001398
[OIQN] human gut metagenome; human gut
204
132
-
Thr
TGT
[ENA]
¢þ
>WENV182478373
OIQN01000274
[OIQN] human gut metagenome; human gut
208
282
+
Gly
TCC
[ENA]
¢þ
>WENV182478407
OIQN01002118
[OIQN] human gut metagenome; human gut
214
140
-
Pro
CGG
[ENA]
¢þ
>WENV182478387
OIQN01000727
[OIQN] human gut metagenome; human gut
222
147
-
Lys
TTT
[ENA]
¢þ
>WENV182478374
OIQN01000274
[OIQN] human gut metagenome; human gut
286
361
+
Thr
GGT
[ENA]
¢þ
>WENV182478362
OIQN01000138
[OIQN] human gut metagenome; human gut
295
378
+
Tyr
GTA
[ENA]
¢þ
>WENV182478386
OIQN01000727
[OIQN] human gut metagenome; human gut
307
232
-
His
GTG
[ENA]
¢þ
>WENV182478397
OIQN01001398
[OIQN] human gut metagenome; human gut
315
234
-
Tyr
GTA
[ENA]
¢þ
>WENV182478406
OIQN01002118
[OIQN] human gut metagenome; human gut
315
245
-
Gln
CTG
[ENA]
¢þ
>WENV182478408
OIQN01002522
[OIQN] human gut metagenome; human gut
357
269
-
Ser
GGA
[ENA]
¢þ
>WENV182478385
OIQN01000727
[OIQN] human gut metagenome; human gut
391
316
-
Gly
TCC
[ENA]
¢þ
>WENV182478396
OIQN01001398
[OIQN] human gut metagenome; human gut
400
327
-
Val
TAC
[ENA]
¢þ
>WENV182478409
OIQN01002721
[OIQN] human gut metagenome; human gut
437
365
-
Trp
CCA
[ENA]
¢þ
>WENV182478413
OIQN01005151
[OIQN] human gut metagenome; human gut
449
367
-
Leu
TAG
[ENA]
¢þ
>WENV182478401
OIQN01001463
[OIQN] human gut metagenome; human gut
452
378
-
Gln
TTG
[ENA]
¢þ
>WENV182478363
OIQN01000138
[OIQN] human gut metagenome; human gut
472
544
+
Thr
GGT
[ENA]
¢þ
>WENV182478384
OIQN01000727
[OIQN] human gut metagenome; human gut
480
404
-
fMet
CAT
[ENA]
¢þ
>WENV182478400
OIQN01001463
[OIQN] human gut metagenome; human gut
532
456
-
Pro
TGG
[ENA]
¢þ
>WENV182478411
OIQN01004097
[OIQN] human gut metagenome; human gut
549
462
-
Ser
GCT
[ENA]
¢þ
>WENV182478354
OIQN01000006
[OIQN] human gut metagenome; human gut
549
474
-
Asn
GTT
[ENA]
¢þ
>WENV182478383
OIQN01000727
[OIQN] human gut metagenome; human gut
576
489
-
Leu
TAA
[ENA]
¢þ
>WENV182478402
OIQN01001478
[OIQN] human gut metagenome; human gut
589
513
-
Arg
CCT
[ENA]
¢þ
>WENV182478403
OIQN01001596
[OIQN] human gut metagenome; human gut
692
766
+
Thr
GGT
[ENA]
¢þ
>WENV182478395
OIQN01001243
[OIQN] human gut metagenome; human gut
706
631
-
Phe
GAA
[ENA]
¢þ
>WENV182478355
OIQN01000019
[OIQN] human gut metagenome; human gut
777
704
-
Asn
GTT
[ENA]
¢þ
>WENV182478376
OIQN01000356
[OIQN] human gut metagenome; human gut
782
857
+
Pro
TGG
[ENA]
¢þ
>WENV182478391
OIQN01000824
[OIQN] human gut metagenome; human gut
808
883
+
Lys
TTT
[ENA]
¢þ
>WENV182478377
OIQN01000356
[OIQN] human gut metagenome; human gut
861
931
+
Gly
TCC
[ENA]
¢þ
>WENV182478371
OIQN01000211
[OIQN] human gut metagenome; human gut
893
805
-
Ser
GCT
[ENA]
¢þ
>WENV182478382
OIQN01000552
[OIQN] human gut metagenome; human gut
906
982
+
Arg
ACG
[ENA]
¢þ
>WENV182478392
OIQN01000872
[OIQN] human gut metagenome; human gut
928
1000
+
Glu
TTC
[ENA]
¢þ
>WENV182478390
OIQN01000795
[OIQN] human gut metagenome; human gut
973
899
-
Glu
TTC
[ENA]
¢þ
>WENV182478370
OIQN01000211
[OIQN] human gut metagenome; human gut
982
899
-
Ser
TGA
[ENA]
¢þ
>WENV182478378
OIQN01000356
[OIQN] human gut metagenome; human gut
982
1057
+
Arg
TCT
[ENA]
¢þ
>WENV182478356
OIQN01000028
[OIQN] human gut metagenome; human gut
985
910
-
Glu
TTC
[ENA]
¢þ
>WENV182478394
OIQN01001241
[OIQN] human gut metagenome; human gut
1007
921
-
Leu
CAA
[ENA]
¢þ
>WENV182478389
OIQN01000753
[OIQN] human gut metagenome; human gut
1037
953
-
Ser
GGA
[ENA]
¢þ
>WENV182478379
OIQN01000356
[OIQN] human gut metagenome; human gut
1062
1136
+
His
GTG
[ENA]
¢þ
>WENV182478380
OIQN01000356
[OIQN] human gut metagenome; human gut
1189
1260
+
Gln
TTG
[ENA]
¢þ
>WENV182478381
OIQN01000356
[OIQN] human gut metagenome; human gut
1295
1367
+
Lys
TTT
[ENA]
¢þ
>WENV182478360
OIQN01000136
[OIQN] human gut metagenome; human gut
1802
1725
-
Asp
GTC
[ENA]
¢þ
>WENV182478369
OIQN01000199
[OIQN] human gut metagenome; human gut
1831
1755
-
Met
CAT
[ENA]
¢þ
>WENV182478364
OIQN01000138
[OIQN] human gut metagenome; human gut
1837
1910
+
Trp
CCA
[ENA]
¢þ
>WENV182478359
OIQN01000136
[OIQN] human gut metagenome; human gut
1893
1818
-
Val
TAC
[ENA]
¢þ
>WENV182478368
OIQN01000199
[OIQN] human gut metagenome; human gut
1912
1836
-
Ala
TGC
[ENA]
¢þ
>WENV182478367
OIQN01000199
[OIQN] human gut metagenome; human gut
1994
1918
-
Ile
GAT
[ENA]
¢þ
>WENV182478366
OIQN01000180
[OIQN] human gut metagenome; human gut
2106
2031
-
Trp
CCA
[ENA]
¢þ
>WENV182478365
OIQN01000147
[OIQN] human gut metagenome; human gut
2168
2083
-
Ser
TGA
[ENA]
¢þ
>WENV182478357
OIQN01000040
[OIQN] human gut metagenome; human gut
2408
2484
+
Asp
GTC
[ENA]
¢þ
>WENV182478358
OIQN01000040
[OIQN] human gut metagenome; human gut
2493
2568
+
Trp
CCA
[ENA]
¢þ
>WENV182478353
OIQN01000001
[OIQN] human gut metagenome; human gut
7440
7366
-
Ala
TGC
[ENA]
¢þ
>WENV182478352
OIQN01000001
[OIQN] human gut metagenome; human gut
7531
7457
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK