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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OITD] human gut metagenome; human gut
HIT:
127 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182496055
OITD01007090
[OITD] human gut metagenome; human gut
24
109
+
Ser
TGA
[ENA]
¢þ
>WENV182495980
OITD01000756
[OITD] human gut metagenome; human gut
85
1
-
Leu
CAA
[ENA]
¢þ
>WENV182496022
OITD01002930
[OITD] human gut metagenome; human gut
85
11
-
Asp
GTC
[ENA]
¢þ
>WENV182496049
OITD01005991
[OITD] human gut metagenome; human gut
87
162
+
Val
TAC
[ENA]
¢þ
>WENV182496020
OITD01002903
[OITD] human gut metagenome; human gut
102
31
-
Cys
GCA
[ENA]
¢þ
>WENV182495998
OITD01001614
[OITD] human gut metagenome; human gut
104
179
+
Lys
CTT
[ENA]
¢þ
>WENV182496064
OITD01010352
[OITD] human gut metagenome; human gut
108
184
+
Met
CAT
[ENA]
¢þ
>WENV182496070
OITD01010436
[OITD] human gut metagenome; human gut
114
42
-
Gln
TTG
[ENA]
¢þ
>WENV182496044
OITD01005114
[OITD] human gut metagenome; human gut
121
46
-
Arg
ACG
[ENA]
¢þ
>WENV182496078
OITD01010978
[OITD] human gut metagenome; human gut
125
50
-
Lys
TTT
[ENA]
¢þ
>WENV182496052
OITD01006166
[OITD] human gut metagenome; human gut
135
221
+
Leu
CAG
[ENA]
¢þ
>WENV182496012
OITD01002612
[OITD] human gut metagenome; human gut
141
66
-
Phe
GAA
[ENA]
¢þ
>WENV182496050
OITD01005992
[OITD] human gut metagenome; human gut
155
80
-
Phe
GAA
[ENA]
¢þ
>WENV182496036
OITD01005012
[OITD] human gut metagenome; human gut
163
89
-
Ile2
CAT
[ENA]
¢þ
>WENV182496053
OITD01006196
[OITD] human gut metagenome; human gut
171
85
-
Leu
TAA
[ENA]
¢þ
>WENV182496047
OITD01005377
[OITD] human gut metagenome; human gut
181
110
-
Gln
TTG
[ENA]
¢þ
>WENV182496051
OITD01006097
[OITD] human gut metagenome; human gut
188
100
-
Ser
GGA
[ENA]
¢þ
>WENV182495995
OITD01001529
[OITD] human gut metagenome; human gut
189
101
-
Ser
GGA
[ENA]
¢þ
>WENV182496063
OITD01010120
[OITD] human gut metagenome; human gut
190
116
-
Ala
GGC
[ENA]
¢þ
>WENV182496069
OITD01010436
[OITD] human gut metagenome; human gut
197
123
-
His
GTG
[ENA]
¢þ
>WENV182496029
OITD01003354
[OITD] human gut metagenome; human gut
202
281
+
Leu
CAA
[ENA]
¢þ
>WENV182496077
OITD01010978
[OITD] human gut metagenome; human gut
204
129
-
Asn
GTT
[ENA]
¢þ
>WENV182496021
OITD01002930
[OITD] human gut metagenome; human gut
215
141
-
Asp
GTC
[ENA]
¢þ
>WENV182496061
OITD01008913
[OITD] human gut metagenome; human gut
217
143
-
Asn
GTT
[ENA]
¢þ
>WENV182495984
OITD01000953
[OITD] human gut metagenome; human gut
219
145
-
Asn
GTT
[ENA]
¢þ
>WENV182496011
OITD01002612
[OITD] human gut metagenome; human gut
239
164
-
fMet
CAT
[ENA]
¢þ
>WENV182496043
OITD01005114
[OITD] human gut metagenome; human gut
241
154
-
Leu
TAA
[ENA]
¢þ
>WENV182496019
OITD01002903
[OITD] human gut metagenome; human gut
257
185
-
Asn
GTT
[ENA]
¢þ
>WENV182496068
OITD01010436
[OITD] human gut metagenome; human gut
276
202
-
Arg
TCT
[ENA]
¢þ
>WENV182496065
OITD01010352
[OITD] human gut metagenome; human gut
276
347
+
Glu
TTC
[ENA]
¢þ
>WENV182496076
OITD01010978
[OITD] human gut metagenome; human gut
284
210
-
Gly
GCC
[ENA]
¢þ
>WENV182496072
OITD01010486
[OITD] human gut metagenome; human gut
289
364
+
Arg
TCT
[ENA]
¢þ
>WENV182496062
OITD01009082
[OITD] human gut metagenome; human gut
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV182496042
OITD01005114
[OITD] human gut metagenome; human gut
317
243
-
Val
TAC
[ENA]
¢þ
>WENV182496054
OITD01007004
[OITD] human gut metagenome; human gut
327
401
+
Pro
CGG
[ENA]
¢þ
>WENV182496071
OITD01010479
[OITD] human gut metagenome; human gut
335
429
+
SeC
TCA
[ENA]
¢þ
>WENV182496031
OITD01003457
[OITD] human gut metagenome; human gut
349
273
-
Arg
ACG
[ENA]
¢þ
>WENV182496067
OITD01010436
[OITD] human gut metagenome; human gut
371
301
-
Gly
TCC
[ENA]
¢þ
>WENV182496073
OITD01010486
[OITD] human gut metagenome; human gut
372
448
+
His
GTG
[ENA]
¢þ
>WENV182496057
OITD01007883
[OITD] human gut metagenome; human gut
388
480
+
Ser
CGA
[ENA]
¢þ
>WENV182496059
OITD01008306
[OITD] human gut metagenome; human gut
392
465
+
Gly
CCC
[ENA]
¢þ
>WENV182496058
OITD01007995
[OITD] human gut metagenome; human gut
421
345
-
Arg
CCG
[ENA]
¢þ
>WENV182495989
OITD01001051
[OITD] human gut metagenome; human gut
425
498
+
Arg
CCT
[ENA]
¢þ
>WENV182496060
OITD01008725
[OITD] human gut metagenome; human gut
427
509
+
Leu
TAG
[ENA]
¢þ
>WENV182496041
OITD01005114
[OITD] human gut metagenome; human gut
428
353
-
Asp
GTC
[ENA]
¢þ
>WENV182496075
OITD01010735
[OITD] human gut metagenome; human gut
439
349
-
Ser
GGA
[ENA]
¢þ
>WENV182496066
OITD01010436
[OITD] human gut metagenome; human gut
459
385
-
Pro
TGG
[ENA]
¢þ
>WENV182496074
OITD01010612
[OITD] human gut metagenome; human gut
460
371
-
Ser
GCT
[ENA]
¢þ
>WENV182496046
OITD01005338
[OITD] human gut metagenome; human gut
483
407
-
Ile
GAT
[ENA]
¢þ
>WENV182496040
OITD01005114
[OITD] human gut metagenome; human gut
518
443
-
Ile2
CAT
[ENA]
¢þ
>WENV182496024
OITD01002966
[OITD] human gut metagenome; human gut
518
446
-
Glu
CTC
[ENA]
¢þ
>WENV182495997
OITD01001560
[OITD] human gut metagenome; human gut
523
598
+
Glu
TTC
[ENA]
¢þ
>WENV182496018
OITD01002903
[OITD] human gut metagenome; human gut
542
470
-
Glu
TTC
[ENA]
¢þ
>WENV182496045
OITD01005338
[OITD] human gut metagenome; human gut
583
508
-
Ala
TGC
[ENA]
¢þ
>WENV182496039
OITD01005114
[OITD] human gut metagenome; human gut
594
521
-
Thr
TGT
[ENA]
¢þ
>WENV182496028
OITD01003294
[OITD] human gut metagenome; human gut
602
675
+
Lys
TTT
[ENA]
¢þ
>WENV182496023
OITD01002966
[OITD] human gut metagenome; human gut
606
533
-
Lys
CTT
[ENA]
¢þ
>WENV182496006
OITD01002192
[OITD] human gut metagenome; human gut
610
683
+
Gly
CCC
[ENA]
¢þ
>WENV182496048
OITD01005779
[OITD] human gut metagenome; human gut
669
741
+
Pro
TGG
[ENA]
¢þ
>WENV182496003
OITD01002099
[OITD] human gut metagenome; human gut
677
750
+
Gln
CTG
[ENA]
¢þ
>WENV182496038
OITD01005114
[OITD] human gut metagenome; human gut
678
606
-
Glu
TTC
[ENA]
¢þ
>WENV182496056
OITD01007378
[OITD] human gut metagenome; human gut
684
602
-
Leu
TAG
[ENA]
¢þ
>WENV182495990
OITD01001171
[OITD] human gut metagenome; human gut
706
780
+
Arg
TCT
[ENA]
¢þ
>WENV182495959
OITD01000107
[OITD] human gut metagenome; human gut
716
642
-
Ala
TGC
[ENA]
¢þ
>WENV182496004
OITD01002099
[OITD] human gut metagenome; human gut
780
853
+
Pro
CGG
[ENA]
¢þ
>WENV182496037
OITD01005114
[OITD] human gut metagenome; human gut
795
724
-
Asn
GTT
[ENA]
¢þ
>WENV182495992
OITD01001230
[OITD] human gut metagenome; human gut
806
877
+
Gln
TTG
[ENA]
¢þ
>WENV182496007
OITD01002268
[OITD] human gut metagenome; human gut
810
885
+
Thr
CGT
[ENA]
¢þ
>WENV182495958
OITD01000107
[OITD] human gut metagenome; human gut
821
745
-
Ile
GAT
[ENA]
¢þ
>WENV182495993
OITD01001308
[OITD] human gut metagenome; human gut
940
1014
+
Glu
CTC
[ENA]
¢þ
>WENV182496002
OITD01001985
[OITD] human gut metagenome; human gut
945
872
-
Trp
CCA
[ENA]
¢þ
>WENV182495996
OITD01001534
[OITD] human gut metagenome; human gut
984
909
-
Pro
GGG
[ENA]
¢þ
>WENV182496032
OITD01003479
[OITD] human gut metagenome; human gut
987
902
-
Tyr
GTA
[ENA]
¢þ
>WENV182496010
OITD01002589
[OITD] human gut metagenome; human gut
999
1073
+
Ile
GAT
[ENA]
¢þ
>WENV182496027
OITD01003245
[OITD] human gut metagenome; human gut
1016
943
-
Ala
TGC
[ENA]
¢þ
>WENV182495972
OITD01000423
[OITD] human gut metagenome; human gut
1037
963
-
Cys
GCA
[ENA]
¢þ
>WENV182495994
OITD01001308
[OITD] human gut metagenome; human gut
1054
1130
+
Asn
GTT
[ENA]
¢þ
>WENV182496026
OITD01003121
[OITD] human gut metagenome; human gut
1124
1031
-
Ser
GCT
[ENA]
¢þ
>WENV182495971
OITD01000423
[OITD] human gut metagenome; human gut
1142
1067
-
Gly
GCC
[ENA]
¢þ
>WENV182495987
OITD01001009
[OITD] human gut metagenome; human gut
1150
1077
-
Thr
CGT
[ENA]
¢þ
>WENV182495986
OITD01000983
[OITD] human gut metagenome; human gut
1183
1108
-
Pro
TGG
[ENA]
¢þ
>WENV182496035
OITD01004432
[OITD] human gut metagenome; human gut
1234
1309
+
Ile2
CAT
[ENA]
¢þ
>WENV182496009
OITD01002479
[OITD] human gut metagenome; human gut
1235
1159
-
Val
CAC
[ENA]
¢þ
>WENV182496025
OITD01003121
[OITD] human gut metagenome; human gut
1244
1157
-
Ser
TGA
[ENA]
¢þ
>WENV182496034
OITD01003505
[OITD] human gut metagenome; human gut
1270
1197
-
fMet
CAT
[ENA]
¢þ
>WENV182496017
OITD01002778
[OITD] human gut metagenome; human gut
1286
1211
-
Ala
TGC
[ENA]
¢þ
>WENV182496015
OITD01002776
[OITD] human gut metagenome; human gut
1330
1408
+
His
GTG
[ENA]
¢þ
>WENV182495961
OITD01000115
[OITD] human gut metagenome; human gut
1339
1255
-
Leu
TAA
[ENA]
¢þ
>WENV182496016
OITD01002778
[OITD] human gut metagenome; human gut
1377
1301
-
Ile
GAT
[ENA]
¢þ
>WENV182495970
OITD01000423
[OITD] human gut metagenome; human gut
1381
1307
-
Asp
GTC
[ENA]
¢þ
>WENV182495960
OITD01000115
[OITD] human gut metagenome; human gut
1426
1353
-
Gly
GCC
[ENA]
¢þ
>WENV182496008
OITD01002442
[OITD] human gut metagenome; human gut
1438
1363
-
Val
GAC
[ENA]
¢þ
>WENV182496033
OITD01003489
[OITD] human gut metagenome; human gut
1441
1524
+
Leu
GAG
[ENA]
¢þ
>WENV182495974
OITD01000553
[OITD] human gut metagenome; human gut
1496
1569
+
Trp
CCA
[ENA]
¢þ
>WENV182496005
OITD01002169
[OITD] human gut metagenome; human gut
1514
1441
-
Phe
GAA
[ENA]
¢þ
>WENV182495983
OITD01000920
[OITD] human gut metagenome; human gut
1604
1678
+
Pro
GGG
[ENA]
¢þ
>WENV182496030
OITD01003381
[OITD] human gut metagenome; human gut
1606
1532
-
Arg
TCT
[ENA]
¢þ
>WENV182495954
OITD01000056
[OITD] human gut metagenome; human gut
1625
1551
-
Thr
TGT
[ENA]
¢þ
>WENV182495969
OITD01000423
[OITD] human gut metagenome; human gut
1633
1558
-
Trp
CCA
[ENA]
¢þ
>WENV182496014
OITD01002719
[OITD] human gut metagenome; human gut
1842
1915
+
Lys
CTT
[ENA]
¢þ
>WENV182495988
OITD01001036
[OITD] human gut metagenome; human gut
1886
1804
-
Leu
TAG
[ENA]
¢þ
>WENV182496013
OITD01002692
[OITD] human gut metagenome; human gut
1886
1811
-
Gly
CCC
[ENA]
¢þ
>WENV182496000
OITD01001978
[OITD] human gut metagenome; human gut
1888
1815
-
Asp
GTC
[ENA]
¢þ
>WENV182495999
OITD01001891
[OITD] human gut metagenome; human gut
2145
2072
-
fMet
CAT
[ENA]
¢þ
>WENV182495979
OITD01000739
[OITD] human gut metagenome; human gut
2174
2102
-
Arg
CCT
[ENA]
¢þ
>WENV182496001
OITD01001985
[OITD] human gut metagenome; human gut
2305
2233
-
Thr
GGT
[ENA]
¢þ
>WENV182495973
OITD01000447
[OITD] human gut metagenome; human gut
2657
2731
+
Ile2
CAT
[ENA]
¢þ
>WENV182495957
OITD01000083
[OITD] human gut metagenome; human gut
2782
2699
-
Tyr
GTA
[ENA]
¢þ
>WENV182495975
OITD01000583
[OITD] human gut metagenome; human gut
2863
2936
+
Gly
CCC
[ENA]
¢þ
>WENV182495968
OITD01000341
[OITD] human gut metagenome; human gut
2914
2842
-
Glu
TTC
[ENA]
¢þ
>WENV182495991
OITD01001218
[OITD] human gut metagenome; human gut
3088
3161
+
Lys
TTT
[ENA]
¢þ
>WENV182495982
OITD01000904
[OITD] human gut metagenome; human gut
3098
3024
-
Ile2
CAT
[ENA]
¢þ
>WENV182495985
OITD01000959
[OITD] human gut metagenome; human gut
3301
3376
+
Thr
GGT
[ENA]
¢þ
>WENV182495981
OITD01000888
[OITD] human gut metagenome; human gut
3555
3483
-
Cys
GCA
[ENA]
¢þ
>WENV182495963
OITD01000135
[OITD] human gut metagenome; human gut
3597
3671
+
His
GTG
[ENA]
¢þ
>WENV182495964
OITD01000141
[OITD] human gut metagenome; human gut
3903
3974
+
Gln
TTG
[ENA]
¢þ
>WENV182495978
OITD01000646
[OITD] human gut metagenome; human gut
4110
4019
-
Ser
GGA
[ENA]
¢þ
>WENV182495976
OITD01000623
[OITD] human gut metagenome; human gut
4128
4215
+
Ser
GCT
[ENA]
¢þ
>WENV182495956
OITD01000058
[OITD] human gut metagenome; human gut
4225
4310
+
Ser
TGA
[ENA]
¢þ
>WENV182495977
OITD01000623
[OITD] human gut metagenome; human gut
4293
4365
+
Glu
CTC
[ENA]
¢þ
>WENV182495967
OITD01000333
[OITD] human gut metagenome; human gut
5505
5576
+
Gln
CTG
[ENA]
¢þ
>WENV182495962
OITD01000134
[OITD] human gut metagenome; human gut
6090
6165
+
Val
TAC
[ENA]
¢þ
>WENV182495966
OITD01000161
[OITD] human gut metagenome; human gut
6771
6699
-
Glu
TTC
[ENA]
¢þ
>WENV182495965
OITD01000152
[OITD] human gut metagenome; human gut
7193
7117
-
Met
CAT
[ENA]
¢þ
>WENV182495955
OITD01000057
[OITD] human gut metagenome; human gut
8255
8329
+
Ala
GGC
[ENA]
¢þ
>WENV182495953
OITD01000034
[OITD] human gut metagenome; human gut
10475
10404
-
Gln
CTG
[ENA]
¢þ
>WENV182495952
OITD01000001
[OITD] human gut metagenome; human gut
57252
57180
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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