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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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HOW TO USE
tRNA gene List
[OITP] human gut metagenome; human gut
HIT:
155 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182498550
OITP01000019
[OITP] human gut metagenome; human gut
15
90
+
Pro
GGG
[ENA]
¢þ
>WENV182498650
OITP01005267
[OITP] human gut metagenome; human gut
35
111
+
Arg
CCT
[ENA]
¢þ
>WENV182498623
OITP01002606
[OITP] human gut metagenome; human gut
60
135
+
Lys
CTT
[ENA]
¢þ
>WENV182498669
OITP01008551
[OITP] human gut metagenome; human gut
75
1
-
Thr
GGT
[ENA]
¢þ
>WENV182498656
OITP01005934
[OITP] human gut metagenome; human gut
77
4
-
Gln
CTG
[ENA]
¢þ
>WENV182498655
OITP01005895
[OITP] human gut metagenome; human gut
86
11
-
Lys
CTT
[ENA]
¢þ
>WENV182498690
OITP01014244
[OITP] human gut metagenome; human gut
87
159
+
Arg
CCG
[ENA]
¢þ
>WENV182498667
OITP01008148
[OITP] human gut metagenome; human gut
105
179
+
Thr
TGT
[ENA]
¢þ
>WENV182498682
OITP01011896
[OITP] human gut metagenome; human gut
121
207
+
Leu
GAG
[ENA]
¢þ
>WENV182498691
OITP01014266
[OITP] human gut metagenome; human gut
131
206
+
Lys
TTT
[ENA]
¢þ
>WENV182498635
OITP01003842
[OITP] human gut metagenome; human gut
132
57
-
Trp
CCA
[ENA]
¢þ
>WENV182498563
OITP01000063
[OITP] human gut metagenome; human gut
147
74
-
Lys
CTT
[ENA]
¢þ
>WENV182498643
OITP01004761
[OITP] human gut metagenome; human gut
149
63
-
Leu
CAG
[ENA]
¢þ
>WENV182498673
OITP01009224
[OITP] human gut metagenome; human gut
149
76
-
Lys
CTT
[ENA]
¢þ
>WENV182498624
OITP01002606
[OITP] human gut metagenome; human gut
180
254
+
Glu
CTC
[ENA]
¢þ
>WENV182498604
OITP01001089
[OITP] human gut metagenome; human gut
202
288
+
Leu
TAA
[ENA]
¢þ
>WENV182498666
OITP01007778
[OITP] human gut metagenome; human gut
208
296
+
Ser
TGA
[ENA]
¢þ
>WENV182498601
OITP01001049
[OITP] human gut metagenome; human gut
209
284
+
Ala
GGC
[ENA]
¢þ
>WENV182498670
OITP01008645
[OITP] human gut metagenome; human gut
212
141
-
Gln
CTG
[ENA]
¢þ
>WENV182498687
OITP01012862
[OITP] human gut metagenome; human gut
213
139
-
Gln
TTG
[ENA]
¢þ
>WENV182498552
OITP01000026
[OITP] human gut metagenome; human gut
213
140
-
fMet
CAT
[ENA]
¢þ
>WENV182498594
OITP01000478
[OITP] human gut metagenome; human gut
230
304
+
Ala
TGC
[ENA]
¢þ
>WENV182498607
OITP01001310
[OITP] human gut metagenome; human gut
233
159
-
Cys
GCA
[ENA]
¢þ
>WENV182498689
OITP01014038
[OITP] human gut metagenome; human gut
242
317
+
fMet
CAT
[ENA]
¢þ
>WENV182498562
OITP01000063
[OITP] human gut metagenome; human gut
244
171
-
Lys
CTT
[ENA]
¢þ
>WENV182498646
OITP01004957
[OITP] human gut metagenome; human gut
259
186
-
Gln
CTG
[ENA]
¢þ
>WENV182498625
OITP01002606
[OITP] human gut metagenome; human gut
277
353
+
Ile2
CAT
[ENA]
¢þ
>WENV182498565
OITP01000074
[OITP] human gut metagenome; human gut
279
205
-
Arg
TCT
[ENA]
¢þ
>WENV182498671
OITP01009014
[OITP] human gut metagenome; human gut
286
373
+
Ser
CGA
[ENA]
¢þ
>WENV182498614
OITP01001841
[OITP] human gut metagenome; human gut
302
227
-
Gly
CCC
[ENA]
¢þ
>WENV182498640
OITP01004534
[OITP] human gut metagenome; human gut
307
382
+
Ala
TGC
[ENA]
¢þ
>WENV182498686
OITP01012862
[OITP] human gut metagenome; human gut
347
271
-
His
GTG
[ENA]
¢þ
>WENV182498626
OITP01002606
[OITP] human gut metagenome; human gut
359
434
+
Trp
CCA
[ENA]
¢þ
>WENV182498659
OITP01006008
[OITP] human gut metagenome; human gut
376
301
-
Lys
TTT
[ENA]
¢þ
>WENV182498641
OITP01004534
[OITP] human gut metagenome; human gut
387
463
+
Ile
GAT
[ENA]
¢þ
>WENV182498679
OITP01010870
[OITP] human gut metagenome; human gut
401
318
-
Leu
TAG
[ENA]
¢þ
>WENV182498680
OITP01010912
[OITP] human gut metagenome; human gut
410
496
+
Leu
CAG
[ENA]
¢þ
>WENV182498649
OITP01005039
[OITP] human gut metagenome; human gut
414
332
-
Tyr
GTA
[ENA]
¢þ
>WENV182498675
OITP01010098
[OITP] human gut metagenome; human gut
415
489
+
fMet
CAT
[ENA]
¢þ
>WENV182498677
OITP01010220
[OITP] human gut metagenome; human gut
416
489
+
Thr
CGT
[ENA]
¢þ
>WENV182498665
OITP01007766
[OITP] human gut metagenome; human gut
417
335
-
Leu
TAG
[ENA]
¢þ
>WENV182498651
OITP01005399
[OITP] human gut metagenome; human gut
417
490
+
Asn
GTT
[ENA]
¢þ
>WENV182498668
OITP01008432
[OITP] human gut metagenome; human gut
427
501
+
fMet
CAT
[ENA]
¢þ
>WENV182498685
OITP01012862
[OITP] human gut metagenome; human gut
430
354
-
Arg
TCT
[ENA]
¢þ
>WENV182498681
OITP01011791
[OITP] human gut metagenome; human gut
439
513
+
Arg
CCT
[ENA]
¢þ
>WENV182498621
OITP01002230
[OITP] human gut metagenome; human gut
448
523
+
Val
GAC
[ENA]
¢þ
>WENV182498674
OITP01009236
[OITP] human gut metagenome; human gut
455
380
-
Pro
TGG
[ENA]
¢þ
>WENV182498678
OITP01010773
[OITP] human gut metagenome; human gut
459
374
-
Leu
AAG
[ENA]
¢þ
>WENV182498683
OITP01012098
[OITP] human gut metagenome; human gut
475
387
-
Ser
GGA
[ENA]
¢þ
>WENV182498644
OITP01004938
[OITP] human gut metagenome; human gut
487
414
-
Gln
TTG
[ENA]
¢þ
>WENV182498688
OITP01013461
[OITP] human gut metagenome; human gut
488
404
-
Tyr
GTA
[ENA]
¢þ
>WENV182498645
OITP01004957
[OITP] human gut metagenome; human gut
493
410
-
Tyr
GTA
[ENA]
¢þ
>WENV182498676
OITP01010098
[OITP] human gut metagenome; human gut
495
568
+
Phe
GAA
[ENA]
¢þ
>WENV182498652
OITP01005399
[OITP] human gut metagenome; human gut
526
598
+
Cys
GCA
[ENA]
¢þ
>WENV182498684
OITP01012862
[OITP] human gut metagenome; human gut
532
459
-
Gly
TCC
[ENA]
¢þ
>WENV182498587
OITP01000413
[OITP] human gut metagenome; human gut
570
496
-
Cys
GCA
[ENA]
¢þ
>WENV182498672
OITP01009218
[OITP] human gut metagenome; human gut
573
663
+
Ser
GGA
[ENA]
¢þ
>WENV182498657
OITP01005984
[OITP] human gut metagenome; human gut
574
650
+
Ile
GAT
[ENA]
¢þ
>WENV182498654
OITP01005859
[OITP] human gut metagenome; human gut
589
671
+
Leu
CAG
[ENA]
¢þ
>WENV182498653
OITP01005802
[OITP] human gut metagenome; human gut
591
501
-
Ser
GCT
[ENA]
¢þ
>WENV182498664
OITP01007398
[OITP] human gut metagenome; human gut
617
693
+
Val
CAC
[ENA]
¢þ
>WENV182498597
OITP01000816
[OITP] human gut metagenome; human gut
641
716
+
Ala
GGC
[ENA]
¢þ
>WENV182498648
OITP01005039
[OITP] human gut metagenome; human gut
650
578
-
Glu
TTC
[ENA]
¢þ
>WENV182498662
OITP01006920
[OITP] human gut metagenome; human gut
664
739
+
Val
TAC
[ENA]
¢þ
>WENV182498639
OITP01004530
[OITP] human gut metagenome; human gut
671
597
-
Ala
GGC
[ENA]
¢þ
>WENV182498661
OITP01006901
[OITP] human gut metagenome; human gut
674
591
-
Leu
GAG
[ENA]
¢þ
>WENV182498586
OITP01000413
[OITP] human gut metagenome; human gut
674
599
-
Gly
GCC
[ENA]
¢þ
>WENV182498632
OITP01003517
[OITP] human gut metagenome; human gut
693
617
-
Asn
GTT
[ENA]
¢þ
>WENV182498616
OITP01002053
[OITP] human gut metagenome; human gut
693
780
+
Ser
GCT
[ENA]
¢þ
>WENV182498629
OITP01003012
[OITP] human gut metagenome; human gut
703
629
-
Glu
CTC
[ENA]
¢þ
>WENV182498658
OITP01005984
[OITP] human gut metagenome; human gut
704
779
+
Ala
TGC
[ENA]
¢þ
>WENV182498647
OITP01005039
[OITP] human gut metagenome; human gut
726
655
-
Gln
TTG
[ENA]
¢þ
>WENV182498663
OITP01007245
[OITP] human gut metagenome; human gut
739
665
-
Ala
TGC
[ENA]
¢þ
>WENV182498660
OITP01006351
[OITP] human gut metagenome; human gut
755
672
-
Tyr
GTA
[ENA]
¢þ
>WENV182498637
OITP01004117
[OITP] human gut metagenome; human gut
769
694
-
Pro
TGG
[ENA]
¢þ
>WENV182498642
OITP01004715
[OITP] human gut metagenome; human gut
779
855
+
fMet
CAT
[ENA]
¢þ
>WENV182498628
OITP01003012
[OITP] human gut metagenome; human gut
780
705
-
Lys
CTT
[ENA]
¢þ
>WENV182498638
OITP01004524
[OITP] human gut metagenome; human gut
864
789
-
Thr
CGT
[ENA]
¢þ
>WENV182498592
OITP01000476
[OITP] human gut metagenome; human gut
892
968
+
Met
CAT
[ENA]
¢þ
>WENV182498615
OITP01001996
[OITP] human gut metagenome; human gut
917
990
+
Lys
CTT
[ENA]
¢þ
>WENV182498561
OITP01000054
[OITP] human gut metagenome; human gut
948
873
-
Gly
CCC
[ENA]
¢þ
>WENV182498598
OITP01000822
[OITP] human gut metagenome; human gut
950
869
-
Leu
TAG
[ENA]
¢þ
>WENV182498636
OITP01003970
[OITP] human gut metagenome; human gut
956
1031
+
Gly
CCC
[ENA]
¢þ
>WENV182498634
OITP01003746
[OITP] human gut metagenome; human gut
972
900
-
Pro
TGG
[ENA]
¢þ
>WENV182498593
OITP01000476
[OITP] human gut metagenome; human gut
1061
1132
+
Glu
TTC
[ENA]
¢þ
>WENV182498633
OITP01003737
[OITP] human gut metagenome; human gut
1112
1039
-
Pro
CGG
[ENA]
¢þ
>WENV182498617
OITP01002053
[OITP] human gut metagenome; human gut
1134
1208
+
Glu
CTC
[ENA]
¢þ
>WENV182498631
OITP01003479
[OITP] human gut metagenome; human gut
1144
1218
+
Ile2
CAT
[ENA]
¢þ
>WENV182498630
OITP01003332
[OITP] human gut metagenome; human gut
1150
1074
-
Trp
CCA
[ENA]
¢þ
>WENV182498622
OITP01002497
[OITP] human gut metagenome; human gut
1207
1137
-
Gly
CCC
[ENA]
¢þ
>WENV182498627
OITP01002945
[OITP] human gut metagenome; human gut
1221
1297
+
fMet
CAT
[ENA]
¢þ
>WENV182498579
OITP01000321
[OITP] human gut metagenome; human gut
1271
1346
+
Gln
CTG
[ENA]
¢þ
>WENV182498608
OITP01001358
[OITP] human gut metagenome; human gut
1348
1275
-
Gly
CCC
[ENA]
¢þ
>WENV182498610
OITP01001519
[OITP] human gut metagenome; human gut
1415
1490
+
Ala
CGC
[ENA]
¢þ
>WENV182498575
OITP01000271
[OITP] human gut metagenome; human gut
1441
1516
+
Ile2
CAT
[ENA]
¢þ
>WENV182498619
OITP01002167
[OITP] human gut metagenome; human gut
1453
1528
+
Arg
TCT
[ENA]
¢þ
>WENV182498618
OITP01002136
[OITP] human gut metagenome; human gut
1500
1575
+
His
GTG
[ENA]
¢þ
>WENV182498569
OITP01000137
[OITP] human gut metagenome; human gut
1525
1599
+
Met
CAT
[ENA]
¢þ
>WENV182498549
OITP01000018
[OITP] human gut metagenome; human gut
1535
1463
-
Arg
CCT
[ENA]
¢þ
>WENV182498620
OITP01002167
[OITP] human gut metagenome; human gut
1536
1612
+
His
GTG
[ENA]
¢þ
>WENV182498609
OITP01001362
[OITP] human gut metagenome; human gut
1561
1488
-
fMet
CAT
[ENA]
¢þ
>WENV182498596
OITP01000657
[OITP] human gut metagenome; human gut
1572
1498
-
Ala
TGC
[ENA]
¢þ
>WENV182498585
OITP01000387
[OITP] human gut metagenome; human gut
1581
1508
-
Gln
TTG
[ENA]
¢þ
>WENV182498595
OITP01000657
[OITP] human gut metagenome; human gut
1663
1589
-
Ile
GAT
[ENA]
¢þ
>WENV182498613
OITP01001763
[OITP] human gut metagenome; human gut
1715
1788
+
fMet
CAT
[ENA]
¢þ
>WENV182498577
OITP01000271
[OITP] human gut metagenome; human gut
1744
1651
-
Ser
GCT
[ENA]
¢þ
>WENV182498612
OITP01001534
[OITP] human gut metagenome; human gut
1841
1766
-
Thr
GGT
[ENA]
¢þ
>WENV182498576
OITP01000271
[OITP] human gut metagenome; human gut
1866
1779
-
Ser
TGA
[ENA]
¢þ
>WENV182498611
OITP01001534
[OITP] human gut metagenome; human gut
1923
1847
-
Asp
GTC
[ENA]
¢þ
>WENV182498599
OITP01000846
[OITP] human gut metagenome; human gut
1986
2077
+
Ser
GGA
[ENA]
¢þ
>WENV182498606
OITP01001150
[OITP] human gut metagenome; human gut
2159
2083
-
Ile
GAT
[ENA]
¢þ
>WENV182498603
OITP01001086
[OITP] human gut metagenome; human gut
2233
2317
+
Tyr
GTA
[ENA]
¢þ
>WENV182498602
OITP01001060
[OITP] human gut metagenome; human gut
2246
2319
+
Ile2
CAT
[ENA]
¢þ
>WENV182498605
OITP01001150
[OITP] human gut metagenome; human gut
2269
2194
-
Ala
TGC
[ENA]
¢þ
>WENV182498570
OITP01000144
[OITP] human gut metagenome; human gut
2300
2379
+
Leu
CAA
[ENA]
¢þ
>WENV182498591
OITP01000463
[OITP] human gut metagenome; human gut
2326
2250
-
Asn
GTT
[ENA]
¢þ
>WENV182498590
OITP01000463
[OITP] human gut metagenome; human gut
2440
2366
-
Glu
CTC
[ENA]
¢þ
>WENV182498581
OITP01000363
[OITP] human gut metagenome; human gut
2465
2391
-
Gly
TCC
[ENA]
¢þ
>WENV182498600
OITP01000883
[OITP] human gut metagenome; human gut
2674
2749
+
Phe
GAA
[ENA]
¢þ
>WENV182498589
OITP01000462
[OITP] human gut metagenome; human gut
2689
2616
-
Trp
CCA
[ENA]
¢þ
>WENV182498582
OITP01000377
[OITP] human gut metagenome; human gut
2717
2792
+
Trp
CCA
[ENA]
¢þ
>WENV182498583
OITP01000377
[OITP] human gut metagenome; human gut
2969
3045
+
Asp
GTC
[ENA]
¢þ
>WENV182498584
OITP01000377
[OITP] human gut metagenome; human gut
3049
3124
+
Thr
GGT
[ENA]
¢þ
>WENV182498578
OITP01000285
[OITP] human gut metagenome; human gut
3458
3543
+
Ser
TGA
[ENA]
¢þ
>WENV182498588
OITP01000462
[OITP] human gut metagenome; human gut
4054
3982
-
Thr
GGT
[ENA]
¢þ
>WENV182498580
OITP01000361
[OITP] human gut metagenome; human gut
4349
4273
-
Arg
CCG
[ENA]
¢þ
>WENV182498560
OITP01000046
[OITP] human gut metagenome; human gut
4606
4679
+
Phe
GAA
[ENA]
¢þ
>WENV182498571
OITP01000157
[OITP] human gut metagenome; human gut
4842
4925
+
Tyr
GTA
[ENA]
¢þ
>WENV182498574
OITP01000232
[OITP] human gut metagenome; human gut
5024
4951
-
Arg
CCT
[ENA]
¢þ
>WENV182498566
OITP01000093
[OITP] human gut metagenome; human gut
5802
5717
-
Ser
TGA
[ENA]
¢þ
>WENV182498551
OITP01000022
[OITP] human gut metagenome; human gut
6428
6502
+
Ile2
CAT
[ENA]
¢þ
>WENV182498573
OITP01000160
[OITP] human gut metagenome; human gut
8089
8015
-
Thr
TGT
[ENA]
¢þ
>WENV182498572
OITP01000158
[OITP] human gut metagenome; human gut
8724
8651
-
Lys
TTT
[ENA]
¢þ
>WENV182498564
OITP01000068
[OITP] human gut metagenome; human gut
8757
8684
-
Gly
GCC
[ENA]
¢þ
>WENV182498568
OITP01000119
[OITP] human gut metagenome; human gut
9819
9893
+
Thr
TGT
[ENA]
¢þ
>WENV182498567
OITP01000116
[OITP] human gut metagenome; human gut
10643
10715
+
Arg
CCG
[ENA]
¢þ
>WENV182498546
OITP01000014
[OITP] human gut metagenome; human gut
11477
11402
-
His
GTG
[ENA]
¢þ
>WENV182498554
OITP01000028
[OITP] human gut metagenome; human gut
13788
13876
+
Ser
GGA
[ENA]
¢þ
>WENV182498548
OITP01000015
[OITP] human gut metagenome; human gut
15347
15272
-
Phe
GAA
[ENA]
¢þ
>WENV182498547
OITP01000015
[OITP] human gut metagenome; human gut
15528
15601
+
Pro
CGG
[ENA]
¢þ
>WENV182498544
OITP01000009
[OITP] human gut metagenome; human gut
28229
28141
-
Ser
GGA
[ENA]
¢þ
>WENV182498559
OITP01000042
[OITP] human gut metagenome; human gut
28746
28672
-
Ala
GGC
[ENA]
¢þ
>WENV182498553
OITP01000027
[OITP] human gut metagenome; human gut
29137
29219
+
Leu
TAG
[ENA]
¢þ
>WENV182498558
OITP01000035
[OITP] human gut metagenome; human gut
32338
32414
+
Val
TAC
[ENA]
¢þ
>WENV182498557
OITP01000032
[OITP] human gut metagenome; human gut
34160
34233
+
Thr
CGT
[ENA]
¢þ
>WENV182498555
OITP01000029
[OITP] human gut metagenome; human gut
43755
43828
+
Gly
GCC
[ENA]
¢þ
>WENV182498556
OITP01000029
[OITP] human gut metagenome; human gut
43844
43929
+
Leu
TAA
[ENA]
¢þ
>WENV182498543
OITP01000009
[OITP] human gut metagenome; human gut
51489
51418
-
Gln
CTG
[ENA]
¢þ
>WENV182498542
OITP01000006
[OITP] human gut metagenome; human gut
58927
58856
-
Gln
TTG
[ENA]
¢þ
>WENV182498545
OITP01000012
[OITP] human gut metagenome; human gut
64044
63970
-
Asn
GTT
[ENA]
¢þ
>WENV182498540
OITP01000004
[OITP] human gut metagenome; human gut
66381
66309
-
Glu
TTC
[ENA]
¢þ
>WENV182498538
OITP01000002
[OITP] human gut metagenome; human gut
69029
69104
+
Lys
TTT
[ENA]
¢þ
>WENV182498541
OITP01000005
[OITP] human gut metagenome; human gut
102246
102173
-
Trp
CCA
[ENA]
¢þ
>WENV182498537
OITP01000001
[OITP] human gut metagenome; human gut
109219
109147
-
Arg
CCT
[ENA]
¢þ
>WENV182498539
OITP01000004
[OITP] human gut metagenome; human gut
116550
116634
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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