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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OIWD] human gut metagenome; faeces
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182509429
OIWD01002597
[OIWD] human gut metagenome; faeces
26
102
+
Arg
ACG
[ENA]
¢þ
>WENV182509411
OIWD01000886
[OIWD] human gut metagenome; faeces
30
101
+
Sup
TCA
[ENA]
¢þ
>WENV182509409
OIWD01000324
[OIWD] human gut metagenome; faeces
46
120
+
Ile2
CAT
[ENA]
¢þ
>WENV182509430
OIWD01002646
[OIWD] human gut metagenome; faeces
104
192
+
Ser
GGA
[ENA]
¢þ
>WENV182509412
OIWD01000886
[OIWD] human gut metagenome; faeces
107
180
+
His
GTG
[ENA]
¢þ
>WENV182509431
OIWD01003332
[OIWD] human gut metagenome; faeces
112
186
+
Thr
CGT
[ENA]
¢þ
>WENV182509425
OIWD01001872
[OIWD] human gut metagenome; faeces
144
72
-
Glu
CTC
[ENA]
¢þ
>WENV182509433
OIWD01003558
[OIWD] human gut metagenome; faeces
177
103
-
Thr
TGT
[ENA]
¢þ
>WENV182509413
OIWD01000886
[OIWD] human gut metagenome; faeces
185
259
+
Thr
TGT
[ENA]
¢þ
>WENV182509434
OIWD01003610
[OIWD] human gut metagenome; faeces
231
156
-
Pro
GGG
[ENA]
¢þ
>WENV182509432
OIWD01003332
[OIWD] human gut metagenome; faeces
232
303
+
Gly
CCC
[ENA]
¢þ
>WENV182509424
OIWD01001872
[OIWD] human gut metagenome; faeces
258
171
-
Ser
GCT
[ENA]
¢þ
>WENV182509419
OIWD01001639
[OIWD] human gut metagenome; faeces
267
182
-
Tyr
GTA
[ENA]
¢þ
>WENV182509428
OIWD01002461
[OIWD] human gut metagenome; faeces
274
349
+
His
GTG
[ENA]
¢þ
>WENV182509418
OIWD01001639
[OIWD] human gut metagenome; faeces
350
274
-
Glu
TTC
[ENA]
¢þ
>WENV182509406
OIWD01000194
[OIWD] human gut metagenome; faeces
368
297
-
Gln
TTG
[ENA]
¢þ
>WENV182509427
OIWD01002230
[OIWD] human gut metagenome; faeces
377
303
-
Met
CAT
[ENA]
¢þ
>WENV182509421
OIWD01001673
[OIWD] human gut metagenome; faeces
378
303
-
Lys
TTT
[ENA]
¢þ
>WENV182509423
OIWD01001760
[OIWD] human gut metagenome; faeces
403
330
-
Phe
GAA
[ENA]
¢þ
>WENV182509417
OIWD01001639
[OIWD] human gut metagenome; faeces
434
358
-
Glu
CTC
[ENA]
¢þ
>WENV182509415
OIWD01001355
[OIWD] human gut metagenome; faeces
470
388
-
Leu
TAG
[ENA]
¢þ
>WENV182509402
OIWD01000045
[OIWD] human gut metagenome; faeces
480
406
-
Ile2
CAT
[ENA]
¢þ
>WENV182509414
OIWD01001143
[OIWD] human gut metagenome; faeces
488
416
-
Arg
CCT
[ENA]
¢þ
>WENV182509420
OIWD01001658
[OIWD] human gut metagenome; faeces
544
462
-
Leu
CAA
[ENA]
¢þ
>WENV182509426
OIWD01001899
[OIWD] human gut metagenome; faeces
545
630
+
Ser
GCT
[ENA]
¢þ
>WENV182509422
OIWD01001760
[OIWD] human gut metagenome; faeces
585
660
+
Pro
CGG
[ENA]
¢þ
>WENV182509416
OIWD01001639
[OIWD] human gut metagenome; faeces
672
597
-
Val
TAC
[ENA]
¢þ
>WENV182509410
OIWD01000551
[OIWD] human gut metagenome; faeces
808
894
+
Leu
TAA
[ENA]
¢þ
>WENV182509408
OIWD01000244
[OIWD] human gut metagenome; faeces
1407
1335
-
Thr
GGT
[ENA]
¢þ
>WENV182509407
OIWD01000244
[OIWD] human gut metagenome; faeces
1589
1507
-
Tyr
GTA
[ENA]
¢þ
>WENV182509403
OIWD01000103
[OIWD] human gut metagenome; faeces
2123
2048
-
Glu
TTC
[ENA]
¢þ
>WENV182509405
OIWD01000139
[OIWD] human gut metagenome; faeces
2270
2196
-
Ala
TGC
[ENA]
¢þ
>WENV182509404
OIWD01000139
[OIWD] human gut metagenome; faeces
2367
2293
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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