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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OIWE] human gut metagenome; faeces
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182509444
OIWE01000100
[OIWE] human gut metagenome; faeces
25
97
+
Gln
TTG
[ENA]
¢þ
>WENV182509476
OIWE01000845
[OIWE] human gut metagenome; faeces
40
116
+
Ile
GAT
[ENA]
¢þ
>WENV182509445
OIWE01000100
[OIWE] human gut metagenome; faeces
98
184
+
Leu
TAA
[ENA]
¢þ
>WENV182509474
OIWE01000340
[OIWE] human gut metagenome; faeces
140
215
+
Ala
TGC
[ENA]
¢þ
>WENV182509464
OIWE01000159
[OIWE] human gut metagenome; faeces
155
71
-
Leu
GAG
[ENA]
¢þ
>WENV182509477
OIWE01000845
[OIWE] human gut metagenome; faeces
158
232
+
Ala
TGC
[ENA]
¢þ
>WENV182509486
OIWE01003303
[OIWE] human gut metagenome; faeces
162
89
-
Phe
GAA
[ENA]
¢þ
>WENV182509441
OIWE01000043
[OIWE] human gut metagenome; faeces
182
256
+
Ile
GAT
[ENA]
¢þ
>WENV182509446
OIWE01000100
[OIWE] human gut metagenome; faeces
190
263
+
Gly
TCC
[ENA]
¢þ
>WENV182509487
OIWE01003473
[OIWE] human gut metagenome; faeces
199
274
+
His
GTG
[ENA]
¢þ
>WENV182509485
OIWE01003303
[OIWE] human gut metagenome; faeces
242
171
-
Gln
CTG
[ENA]
¢þ
>WENV182509478
OIWE01000961
[OIWE] human gut metagenome; faeces
246
320
+
Thr
TGT
[ENA]
¢þ
>WENV182509463
OIWE01000159
[OIWE] human gut metagenome; faeces
259
178
-
Leu
CAG
[ENA]
¢þ
>WENV182509442
OIWE01000043
[OIWE] human gut metagenome; faeces
273
347
+
Ala
TGC
[ENA]
¢þ
>WENV182509465
OIWE01000227
[OIWE] human gut metagenome; faeces
273
348
+
Thr
TGT
[ENA]
¢þ
>WENV182509447
OIWE01000100
[OIWE] human gut metagenome; faeces
274
348
+
Pro
TGG
[ENA]
¢þ
>WENV182509480
OIWE01000986
[OIWE] human gut metagenome; faeces
290
215
-
Phe
GAA
[ENA]
¢þ
>WENV182509488
OIWE01003473
[OIWE] human gut metagenome; faeces
313
386
+
Gln
TTG
[ENA]
¢þ
>WENV182509489
OIWE01004321
[OIWE] human gut metagenome; faeces
333
407
+
Met
CAT
[ENA]
¢þ
>WENV182509484
OIWE01003303
[OIWE] human gut metagenome; faeces
334
248
-
Ser
TGA
[ENA]
¢þ
>WENV182509473
OIWE01000277
[OIWE] human gut metagenome; faeces
347
423
+
Pro
CGG
[ENA]
¢þ
>WENV182509448
OIWE01000100
[OIWE] human gut metagenome; faeces
350
439
+
Ser
TGA
[ENA]
¢þ
>WENV182509466
OIWE01000227
[OIWE] human gut metagenome; faeces
357
441
+
Tyr
GTA
[ENA]
¢þ
>WENV182509479
OIWE01000961
[OIWE] human gut metagenome; faeces
363
446
+
Tyr
GTA
[ENA]
¢þ
>WENV182509462
OIWE01000159
[OIWE] human gut metagenome; faeces
379
306
-
Gly
GCC
[ENA]
¢þ
>WENV182509483
OIWE01003303
[OIWE] human gut metagenome; faeces
416
341
-
Arg
ACG
[ENA]
¢þ
>WENV182509449
OIWE01000100
[OIWE] human gut metagenome; faeces
445
520
+
Thr
TGT
[ENA]
¢þ
>WENV182509467
OIWE01000227
[OIWE] human gut metagenome; faeces
446
520
+
fMet
CAT
[ENA]
¢þ
>WENV182509482
OIWE01003303
[OIWE] human gut metagenome; faeces
507
422
-
Ser
GCT
[ENA]
¢þ
>WENV182509450
OIWE01000100
[OIWE] human gut metagenome; faeces
522
596
+
Met
CAT
[ENA]
¢þ
>WENV182509468
OIWE01000227
[OIWE] human gut metagenome; faeces
523
595
+
Phe
GAA
[ENA]
¢þ
>WENV182509481
OIWE01003211
[OIWE] human gut metagenome; faeces
525
449
-
Val
TAC
[ENA]
¢þ
>WENV182509451
OIWE01000100
[OIWE] human gut metagenome; faeces
603
689
+
Tyr
GTA
[ENA]
¢þ
>WENV182509469
OIWE01000227
[OIWE] human gut metagenome; faeces
609
693
+
Tyr
GTA
[ENA]
¢þ
>WENV182509452
OIWE01000100
[OIWE] human gut metagenome; faeces
694
768
+
Asn
GTT
[ENA]
¢þ
>WENV182509470
OIWE01000227
[OIWE] human gut metagenome; faeces
696
768
+
Trp
CCA
[ENA]
¢þ
>WENV182509453
OIWE01000100
[OIWE] human gut metagenome; faeces
773
848
+
Arg
TCT
[ENA]
¢þ
>WENV182509461
OIWE01000151
[OIWE] human gut metagenome; faeces
796
720
-
Arg
TCT
[ENA]
¢þ
>WENV182509475
OIWE01000785
[OIWE] human gut metagenome; faeces
798
726
-
fMet
CAT
[ENA]
¢þ
>WENV182509471
OIWE01000227
[OIWE] human gut metagenome; faeces
860
934
+
Gln
TTG
[ENA]
¢þ
>WENV182509460
OIWE01000151
[OIWE] human gut metagenome; faeces
878
805
-
Gly
TCC
[ENA]
¢þ
>WENV182509472
OIWE01000227
[OIWE] human gut metagenome; faeces
940
1015
+
Lys
TTT
[ENA]
¢þ
>WENV182509459
OIWE01000151
[OIWE] human gut metagenome; faeces
1042
969
-
Arg
ACG
[ENA]
¢þ
>WENV182509458
OIWE01000151
[OIWE] human gut metagenome; faeces
1143
1056
-
Leu
TAA
[ENA]
¢þ
>WENV182509457
OIWE01000151
[OIWE] human gut metagenome; faeces
1235
1162
-
Cys
GCA
[ENA]
¢þ
>WENV182509456
OIWE01000151
[OIWE] human gut metagenome; faeces
1319
1245
-
Gly
GCC
[ENA]
¢þ
>WENV182509455
OIWE01000151
[OIWE] human gut metagenome; faeces
1398
1323
-
Val
TAC
[ENA]
¢þ
>WENV182509454
OIWE01000151
[OIWE] human gut metagenome; faeces
1476
1402
-
Glu
TTC
[ENA]
¢þ
>WENV182509436
OIWE01000004
[OIWE] human gut metagenome; faeces
1849
1774
-
Thr
GGT
[ENA]
¢þ
>WENV182509443
OIWE01000070
[OIWE] human gut metagenome; faeces
1934
2010
+
Asp
GTC
[ENA]
¢þ
>WENV182509439
OIWE01000027
[OIWE] human gut metagenome; faeces
2735
2809
+
Ile
GAT
[ENA]
¢þ
>WENV182509440
OIWE01000027
[OIWE] human gut metagenome; faeces
2872
2946
+
Ala
TGC
[ENA]
¢þ
>WENV182509435
OIWE01000004
[OIWE] human gut metagenome; faeces
5245
5170
-
Glu
TTC
[ENA]
¢þ
>WENV182509437
OIWE01000005
[OIWE] human gut metagenome; faeces
5798
5885
+
Ser
TGA
[ENA]
¢þ
>WENV182509438
OIWE01000005
[OIWE] human gut metagenome; faeces
5890
5977
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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