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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJAF] seawater metagenome; Sea water
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182540230
OJAF01000504
[OJAF] seawater metagenome; Sea water
18
94
+
Ile
GAT
[ENA]
¢þ
>WENV182540263
OJAF01004619
[OJAF] seawater metagenome; Sea water
82
157
+
Ala
TGC
[ENA]
¢þ
>WENV182540252
OJAF01002677
[OJAF] seawater metagenome; Sea water
107
36
-
Glu
TTC
[ENA]
¢þ
>WENV182540256
OJAF01003130
[OJAF] seawater metagenome; Sea water
116
42
-
Asp
GTC
[ENA]
¢þ
>WENV182540242
OJAF01000909
[OJAF] seawater metagenome; Sea water
139
63
-
fMet
CAT
[ENA]
¢þ
>WENV182540238
OJAF01000724
[OJAF] seawater metagenome; Sea water
157
83
-
Asp
GTC
[ENA]
¢þ
>WENV182540227
OJAF01000429
[OJAF] seawater metagenome; Sea water
177
101
-
Asp
GTC
[ENA]
¢þ
>WENV182540251
OJAF01002677
[OJAF] seawater metagenome; Sea water
185
113
-
Val
AAC
[ENA]
¢þ
>WENV182540262
OJAF01003876
[OJAF] seawater metagenome; Sea water
188
117
-
Gly
TCC
[ENA]
¢þ
>WENV182540257
OJAF01003295
[OJAF] seawater metagenome; Sea water
208
283
+
Ile
AAT
[ENA]
¢þ
>WENV182540235
OJAF01000585
[OJAF] seawater metagenome; Sea water
270
185
-
Leu
TAA
[ENA]
¢þ
>WENV182540265
OJAF01005013
[OJAF] seawater metagenome; Sea water
272
346
+
Arg
TCT
[ENA]
¢þ
>WENV182540233
OJAF01000543
[OJAF] seawater metagenome; Sea water
283
211
-
fMet
CAT
[ENA]
¢þ
>WENV182540224
OJAF01000358
[OJAF] seawater metagenome; Sea water
288
212
-
Arg
ACG
[ENA]
¢þ
>WENV182540260
OJAF01003578
[OJAF] seawater metagenome; Sea water
310
394
+
Leu
TAG
[ENA]
¢þ
>WENV182540266
OJAF01005169
[OJAF] seawater metagenome; Sea water
353
428
+
Ala
TGC
[ENA]
¢þ
>WENV182540248
OJAF01001795
[OJAF] seawater metagenome; Sea water
358
269
-
Ser
GCT
[ENA]
¢þ
>WENV182540250
OJAF01002662
[OJAF] seawater metagenome; Sea water
390
466
+
Met
CAT
[ENA]
¢þ
>WENV182540259
OJAF01003295
[OJAF] seawater metagenome; Sea water
406
332
-
Lys
TTT
[ENA]
¢þ
>WENV182540234
OJAF01000585
[OJAF] seawater metagenome; Sea water
407
332
-
Gly
GCC
[ENA]
¢þ
>WENV182540243
OJAF01000934
[OJAF] seawater metagenome; Sea water
408
335
-
Gln
TTG
[ENA]
¢þ
>WENV182540231
OJAF01000540
[OJAF] seawater metagenome; Sea water
431
506
+
Arg
TCT
[ENA]
¢þ
>WENV182540264
OJAF01004719
[OJAF] seawater metagenome; Sea water
463
391
-
Ala
TGC
[ENA]
¢þ
>WENV182540254
OJAF01002758
[OJAF] seawater metagenome; Sea water
508
433
-
Ala
TGC
[ENA]
¢þ
>WENV182540232
OJAF01000540
[OJAF] seawater metagenome; Sea water
509
579
+
Gly
TCC
[ENA]
¢þ
>WENV182540223
OJAF01000358
[OJAF] seawater metagenome; Sea water
524
433
-
Ser
GCT
[ENA]
¢þ
>WENV182540261
OJAF01003876
[OJAF] seawater metagenome; Sea water
530
447
-
Tyr
GTA
[ENA]
¢þ
>WENV182540258
OJAF01003295
[OJAF] seawater metagenome; Sea water
545
474
-
Asp
GTC
[ENA]
¢þ
>WENV182540205
OJAF01000047
[OJAF] seawater metagenome; Sea water
550
626
+
Pro
TGG
[ENA]
¢þ
>WENV182540209
OJAF01000102
[OJAF] seawater metagenome; Sea water
567
643
+
Arg
CCG
[ENA]
¢þ
>WENV182540255
OJAF01003124
[OJAF] seawater metagenome; Sea water
640
567
-
Ile2
CAT
[ENA]
¢þ
>WENV182540253
OJAF01002758
[OJAF] seawater metagenome; Sea water
642
566
-
Ile
GAT
[ENA]
¢þ
>WENV182540249
OJAF01002169
[OJAF] seawater metagenome; Sea water
663
739
+
fMet
CAT
[ENA]
¢þ
>WENV182540247
OJAF01001713
[OJAF] seawater metagenome; Sea water
690
616
-
Cys
GCA
[ENA]
¢þ
>WENV182540244
OJAF01001091
[OJAF] seawater metagenome; Sea water
690
764
+
Arg
TCT
[ENA]
¢þ
>WENV182540206
OJAF01000047
[OJAF] seawater metagenome; Sea water
799
875
+
Arg
TCT
[ENA]
¢þ
>WENV182540207
OJAF01000047
[OJAF] seawater metagenome; Sea water
883
958
+
His
GTG
[ENA]
¢þ
>WENV182540246
OJAF01001517
[OJAF] seawater metagenome; Sea water
956
883
-
Ile2
CAT
[ENA]
¢þ
>WENV182540208
OJAF01000047
[OJAF] seawater metagenome; Sea water
991
1067
+
Pro
TGG
[ENA]
¢þ
>WENV182540245
OJAF01001517
[OJAF] seawater metagenome; Sea water
1031
960
-
Ile
TAT
[ENA]
¢þ
>WENV182540215
OJAF01000238
[OJAF] seawater metagenome; Sea water
1105
1029
-
Ile2
CAT
[ENA]
¢þ
>WENV182540228
OJAF01000473
[OJAF] seawater metagenome; Sea water
1209
1133
-
Asp
GTC
[ENA]
¢þ
>WENV182540211
OJAF01000137
[OJAF] seawater metagenome; Sea water
1306
1382
+
Trp
CCA
[ENA]
¢þ
>WENV182540214
OJAF01000206
[OJAF] seawater metagenome; Sea water
1340
1416
+
Trp
CCA
[ENA]
¢þ
>WENV182540236
OJAF01000591
[OJAF] seawater metagenome; Sea water
1510
1583
+
Gln
TTG
[ENA]
¢þ
>WENV182540213
OJAF01000182
[OJAF] seawater metagenome; Sea water
1523
1433
-
Ser
TGA
[ENA]
¢þ
>WENV182540202
OJAF01000007
[OJAF] seawater metagenome; Sea water
1529
1454
-
Thr
GGT
[ENA]
¢þ
>WENV182540201
OJAF01000007
[OJAF] seawater metagenome; Sea water
1619
1545
-
Gly
TCC
[ENA]
¢þ
>WENV182540241
OJAF01000800
[OJAF] seawater metagenome; Sea water
1666
1741
+
Val
TAC
[ENA]
¢þ
>WENV182540239
OJAF01000776
[OJAF] seawater metagenome; Sea water
1674
1762
+
Ser
TGA
[ENA]
¢þ
>WENV182540200
OJAF01000007
[OJAF] seawater metagenome; Sea water
1733
1649
-
Tyr
GTA
[ENA]
¢þ
>WENV182540240
OJAF01000792
[OJAF] seawater metagenome; Sea water
1756
1680
-
Asp
GTC
[ENA]
¢þ
>WENV182540210
OJAF01000133
[OJAF] seawater metagenome; Sea water
1818
1894
+
Val
GAC
[ENA]
¢þ
>WENV182540199
OJAF01000007
[OJAF] seawater metagenome; Sea water
1846
1771
-
Thr
TGT
[ENA]
¢þ
>WENV182540237
OJAF01000710
[OJAF] seawater metagenome; Sea water
1869
1944
+
Trp
CCA
[ENA]
¢þ
>WENV182540218
OJAF01000296
[OJAF] seawater metagenome; Sea water
1911
1986
+
Phe
GAA
[ENA]
¢þ
>WENV182540229
OJAF01000503
[OJAF] seawater metagenome; Sea water
1986
1912
-
fMet
CAT
[ENA]
¢þ
>WENV182540203
OJAF01000032
[OJAF] seawater metagenome; Sea water
2394
2470
+
Pro
GGG
[ENA]
¢þ
>WENV182540225
OJAF01000407
[OJAF] seawater metagenome; Sea water
2405
2481
+
Met
CAT
[ENA]
¢þ
>WENV182540226
OJAF01000407
[OJAF] seawater metagenome; Sea water
2511
2595
+
Leu
TAG
[ENA]
¢þ
>WENV182540219
OJAF01000299
[OJAF] seawater metagenome; Sea water
2762
2837
+
Lys
TTT
[ENA]
¢þ
>WENV182540212
OJAF01000142
[OJAF] seawater metagenome; Sea water
3869
3953
+
Leu
GAG
[ENA]
¢þ
>WENV182540220
OJAF01000299
[OJAF] seawater metagenome; Sea water
4347
4434
+
Ser
GGA
[ENA]
¢þ
>WENV182540221
OJAF01000308
[OJAF] seawater metagenome; Sea water
4811
4886
+
Asn
GTT
[ENA]
¢þ
>WENV182540222
OJAF01000308
[OJAF] seawater metagenome; Sea water
5090
5165
+
Asn
GTT
[ENA]
¢þ
>WENV182540217
OJAF01000286
[OJAF] seawater metagenome; Sea water
5293
5368
+
Ala
GGC
[ENA]
¢þ
>WENV182540204
OJAF01000032
[OJAF] seawater metagenome; Sea water
6091
6001
-
Ser
TGA
[ENA]
¢þ
>WENV182540216
OJAF01000246
[OJAF] seawater metagenome; Sea water
6127
6211
+
Leu
CAA
[ENA]
¢þ
>WENV182540198
OJAF01000001
[OJAF] seawater metagenome; Sea water
15317
15242
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK