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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJAH] seawater metagenome; Sea water
HIT:
108 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182540330
OJAH01002099
[OJAH] seawater metagenome; Sea water
44
118
+
Gly
GCC
[ENA]
¢þ
>WENV182540313
OJAH01001054
[OJAH] seawater metagenome; Sea water
50
123
+
Ala
GGC
[ENA]
¢þ
>WENV182540288
OJAH01000211
[OJAH] seawater metagenome; Sea water
81
157
+
Arg
ACG
[ENA]
¢þ
>WENV182540368
OJAH01006140
[OJAH] seawater metagenome; Sea water
89
165
+
Asp
GTC
[ENA]
¢þ
>WENV182540323
OJAH01001551
[OJAH] seawater metagenome; Sea water
103
12
-
Ser
GCT
[ENA]
¢þ
>WENV182540350
OJAH01003405
[OJAH] seawater metagenome; Sea water
114
42
-
Arg
CCT
[ENA]
¢þ
>WENV182540332
OJAH01002212
[OJAH] seawater metagenome; Sea water
143
218
+
Glu
TTC
[ENA]
¢þ
>WENV182540371
OJAH01006939
[OJAH] seawater metagenome; Sea water
151
77
-
His
GTG
[ENA]
¢þ
>WENV182540300
OJAH01000364
[OJAH] seawater metagenome; Sea water
157
231
+
Gln
TTG
[ENA]
¢þ
>WENV182540354
OJAH01004029
[OJAH] seawater metagenome; Sea water
160
74
-
Leu
CAA
[ENA]
¢þ
>WENV182540336
OJAH01002365
[OJAH] seawater metagenome; Sea water
167
250
+
Tyr
GTA
[ENA]
¢þ
>WENV182540316
OJAH01001443
[OJAH] seawater metagenome; Sea water
176
250
+
Ile
GAT
[ENA]
¢þ
>WENV182540360
OJAH01005329
[OJAH] seawater metagenome; Sea water
191
107
-
Leu
TAG
[ENA]
¢þ
>WENV182540326
OJAH01001807
[OJAH] seawater metagenome; Sea water
214
298
+
Leu
TAA
[ENA]
¢þ
>WENV182540339
OJAH01002482
[OJAH] seawater metagenome; Sea water
215
288
+
Arg
ACG
[ENA]
¢þ
>WENV182540331
OJAH01002135
[OJAH] seawater metagenome; Sea water
255
331
+
Arg
ACG
[ENA]
¢þ
>WENV182540343
OJAH01002883
[OJAH] seawater metagenome; Sea water
261
334
+
Met
CAT
[ENA]
¢þ
>WENV182540361
OJAH01005776
[OJAH] seawater metagenome; Sea water
263
339
+
Met
CAT
[ENA]
¢þ
>WENV182540373
OJAH01008020
[OJAH] seawater metagenome; Sea water
281
353
+
Trp
CCA
[ENA]
¢þ
>WENV182540359
OJAH01004658
[OJAH] seawater metagenome; Sea water
296
380
+
Leu
TAA
[ENA]
¢þ
>WENV182540337
OJAH01002365
[OJAH] seawater metagenome; Sea water
331
404
+
Gly
TCC
[ENA]
¢þ
>WENV182540317
OJAH01001443
[OJAH] seawater metagenome; Sea water
340
414
+
Ala
TGC
[ENA]
¢þ
>WENV182540358
OJAH01004621
[OJAH] seawater metagenome; Sea water
348
424
+
Pro
TGG
[ENA]
¢þ
>WENV182540374
OJAH01008020
[OJAH] seawater metagenome; Sea water
368
456
+
Ser
GCT
[ENA]
¢þ
>WENV182540318
OJAH01001467
[OJAH] seawater metagenome; Sea water
378
295
-
Leu
TAG
[ENA]
¢þ
>WENV182540369
OJAH01006141
[OJAH] seawater metagenome; Sea water
379
292
-
Ser
TGA
[ENA]
¢þ
>WENV182540367
OJAH01006134
[OJAH] seawater metagenome; Sea water
390
465
+
Phe
GAA
[ENA]
¢þ
>WENV182540364
OJAH01005920
[OJAH] seawater metagenome; Sea water
401
488
+
Ser
GGA
[ENA]
¢þ
>WENV182540306
OJAH01000734
[OJAH] seawater metagenome; Sea water
408
324
-
Leu
CAA
[ENA]
¢þ
>WENV182540372
OJAH01007731
[OJAH] seawater metagenome; Sea water
413
337
-
Met
CAT
[ENA]
¢þ
>WENV182540338
OJAH01002365
[OJAH] seawater metagenome; Sea water
423
498
+
Thr
GGT
[ENA]
¢þ
>WENV182540362
OJAH01005841
[OJAH] seawater metagenome; Sea water
430
505
+
Val
TAC
[ENA]
¢þ
>WENV182540353
OJAH01004002
[OJAH] seawater metagenome; Sea water
431
507
+
Arg
TCT
[ENA]
¢þ
>WENV182540315
OJAH01001129
[OJAH] seawater metagenome; Sea water
432
356
-
Asp
GTC
[ENA]
¢þ
>WENV182540328
OJAH01002021
[OJAH] seawater metagenome; Sea water
438
362
-
Ile
GAT
[ENA]
¢þ
>WENV182540349
OJAH01003365
[OJAH] seawater metagenome; Sea water
449
525
+
Pro
GGG
[ENA]
¢þ
>WENV182540327
OJAH01001889
[OJAH] seawater metagenome; Sea water
458
533
+
Thr
TGT
[ENA]
¢þ
>WENV182540365
OJAH01006000
[OJAH] seawater metagenome; Sea water
471
545
+
Gly
GCC
[ENA]
¢þ
>WENV182540347
OJAH01003286
[OJAH] seawater metagenome; Sea water
485
399
-
Leu
GAG
[ENA]
¢þ
>WENV182540305
OJAH01000674
[OJAH] seawater metagenome; Sea water
486
411
-
Trp
CCA
[ENA]
¢þ
>WENV182540325
OJAH01001788
[OJAH] seawater metagenome; Sea water
486
561
+
Thr
TGT
[ENA]
¢þ
>WENV182540370
OJAH01006869
[OJAH] seawater metagenome; Sea water
487
415
-
Glu
CTC
[ENA]
¢þ
>WENV182540356
OJAH01004186
[OJAH] seawater metagenome; Sea water
488
563
+
fMet
CAT
[ENA]
¢þ
>WENV182540314
OJAH01001129
[OJAH] seawater metagenome; Sea water
514
439
-
Val
TAC
[ENA]
¢þ
>WENV182540363
OJAH01005841
[OJAH] seawater metagenome; Sea water
514
590
+
Asp
GTC
[ENA]
¢þ
>WENV182540348
OJAH01003289
[OJAH] seawater metagenome; Sea water
524
448
-
fMet
CAT
[ENA]
¢þ
>WENV182540301
OJAH01000408
[OJAH] seawater metagenome; Sea water
527
452
-
Ala
TGC
[ENA]
¢þ
>WENV182540341
OJAH01002610
[OJAH] seawater metagenome; Sea water
539
613
+
Ile
GAT
[ENA]
¢þ
>WENV182540357
OJAH01004600
[OJAH] seawater metagenome; Sea water
541
451
-
Ser
GCT
[ENA]
¢þ
>WENV182540344
OJAH01003032
[OJAH] seawater metagenome; Sea water
567
478
-
Ser
GGA
[ENA]
¢þ
>WENV182540355
OJAH01004167
[OJAH] seawater metagenome; Sea water
571
646
+
Thr
GGT
[ENA]
¢þ
>WENV182540321
OJAH01001542
[OJAH] seawater metagenome; Sea water
572
656
+
Leu
GAG
[ENA]
¢þ
>WENV182540352
OJAH01003894
[OJAH] seawater metagenome; Sea water
577
506
-
Gly
CCC
[ENA]
¢þ
>WENV182540319
OJAH01001531
[OJAH] seawater metagenome; Sea water
583
666
+
Tyr
GTA
[ENA]
¢þ
>WENV182540366
OJAH01006051
[OJAH] seawater metagenome; Sea water
584
508
-
His
GTG
[ENA]
¢þ
>WENV182540346
OJAH01003286
[OJAH] seawater metagenome; Sea water
585
513
-
Gly
GCC
[ENA]
¢þ
>WENV182540307
OJAH01000752
[OJAH] seawater metagenome; Sea water
586
670
+
Leu
CAA
[ENA]
¢þ
>WENV182540342
OJAH01002610
[OJAH] seawater metagenome; Sea water
635
710
+
Ala
TGC
[ENA]
¢þ
>WENV182540351
OJAH01003886
[OJAH] seawater metagenome; Sea water
645
721
+
Ile2
CAT
[ENA]
¢þ
>WENV182540340
OJAH01002482
[OJAH] seawater metagenome; Sea water
654
569
-
Ser
TGA
[ENA]
¢þ
>WENV182540322
OJAH01001550
[OJAH] seawater metagenome; Sea water
713
789
+
Ile2
CAT
[ENA]
¢þ
>WENV182540320
OJAH01001531
[OJAH] seawater metagenome; Sea water
789
863
+
Thr
GGT
[ENA]
¢þ
>WENV182540334
OJAH01002243
[OJAH] seawater metagenome; Sea water
807
731
-
His
GTG
[ENA]
¢þ
>WENV182540303
OJAH01000650
[OJAH] seawater metagenome; Sea water
814
725
-
Ser
TGA
[ENA]
¢þ
>WENV182540324
OJAH01001630
[OJAH] seawater metagenome; Sea water
817
726
-
Ser
TGA
[ENA]
¢þ
>WENV182540345
OJAH01003130
[OJAH] seawater metagenome; Sea water
842
768
-
Phe
GAA
[ENA]
¢þ
>WENV182540335
OJAH01002246
[OJAH] seawater metagenome; Sea water
857
944
+
Ser
TGA
[ENA]
¢þ
>WENV182540267
OJAH01000002
[OJAH] seawater metagenome; Sea water
864
791
-
Gln
TTG
[ENA]
¢þ
>WENV182540282
OJAH01000140
[OJAH] seawater metagenome; Sea water
890
801
-
Ser
GCT
[ENA]
¢þ
>WENV182540285
OJAH01000173
[OJAH] seawater metagenome; Sea water
899
824
-
Phe
GAA
[ENA]
¢þ
>WENV182540292
OJAH01000284
[OJAH] seawater metagenome; Sea water
905
982
+
Ile
GAT
[ENA]
¢þ
>WENV182540268
OJAH01000003
[OJAH] seawater metagenome; Sea water
914
839
-
Lys
TTT
[ENA]
¢þ
>WENV182540333
OJAH01002237
[OJAH] seawater metagenome; Sea water
931
1006
+
Glu
TTC
[ENA]
¢þ
>WENV182540329
OJAH01002097
[OJAH] seawater metagenome; Sea water
964
892
-
Gln
CTG
[ENA]
¢þ
>WENV182540299
OJAH01000357
[OJAH] seawater metagenome; Sea water
1009
1083
+
Arg
TCG
[ENA]
¢þ
>WENV182540310
OJAH01000976
[OJAH] seawater metagenome; Sea water
1042
967
-
Trp
CCA
[ENA]
¢þ
>WENV182540311
OJAH01000999
[OJAH] seawater metagenome; Sea water
1126
1050
-
Arg
TCT
[ENA]
¢þ
>WENV182540312
OJAH01001049
[OJAH] seawater metagenome; Sea water
1235
1311
+
Ile2
CAT
[ENA]
¢þ
>WENV182540309
OJAH01000928
[OJAH] seawater metagenome; Sea water
1257
1333
+
Pro
TGG
[ENA]
¢þ
>WENV182540302
OJAH01000605
[OJAH] seawater metagenome; Sea water
1402
1476
+
Gly
GCC
[ENA]
¢þ
>WENV182540308
OJAH01000880
[OJAH] seawater metagenome; Sea water
1404
1489
+
Leu
GAG
[ENA]
¢þ
>WENV182540277
OJAH01000090
[OJAH] seawater metagenome; Sea water
1628
1537
-
Ser
GCT
[ENA]
¢þ
>WENV182540290
OJAH01000233
[OJAH] seawater metagenome; Sea water
1732
1656
-
His
GTG
[ENA]
¢þ
>WENV182540304
OJAH01000674
[OJAH] seawater metagenome; Sea water
1803
1730
-
Gly
TCC
[ENA]
¢þ
>WENV182540289
OJAH01000233
[OJAH] seawater metagenome; Sea water
1971
1896
-
Phe
GAA
[ENA]
¢þ
>WENV182540275
OJAH01000066
[OJAH] seawater metagenome; Sea water
2142
2218
+
Ile
GAT
[ENA]
¢þ
>WENV182540281
OJAH01000108
[OJAH] seawater metagenome; Sea water
2162
2087
-
Trp
CCA
[ENA]
¢þ
>WENV182540291
OJAH01000274
[OJAH] seawater metagenome; Sea water
2194
2121
-
Gln
TTG
[ENA]
¢þ
>WENV182540276
OJAH01000066
[OJAH] seawater metagenome; Sea water
2222
2295
+
Ala
TGC
[ENA]
¢þ
>WENV182540271
OJAH01000006
[OJAH] seawater metagenome; Sea water
2352
2278
-
His
GTG
[ENA]
¢þ
>WENV182540297
OJAH01000331
[OJAH] seawater metagenome; Sea water
2491
2416
-
Ala
TGC
[ENA]
¢þ
>WENV182540294
OJAH01000317
[OJAH] seawater metagenome; Sea water
2559
2484
-
Ala
TGC
[ENA]
¢þ
>WENV182540296
OJAH01000331
[OJAH] seawater metagenome; Sea water
2579
2503
-
Ile
GAT
[ENA]
¢þ
>WENV182540270
OJAH01000006
[OJAH] seawater metagenome; Sea water
2643
2568
-
Phe
GAA
[ENA]
¢þ
>WENV182540293
OJAH01000317
[OJAH] seawater metagenome; Sea water
2649
2573
-
Ile
GAT
[ENA]
¢þ
>WENV182540295
OJAH01000321
[OJAH] seawater metagenome; Sea water
2650
2566
-
Leu
TAG
[ENA]
¢þ
>WENV182540298
OJAH01000336
[OJAH] seawater metagenome; Sea water
2990
3066
+
fMet
CAT
[ENA]
¢þ
>WENV182540286
OJAH01000181
[OJAH] seawater metagenome; Sea water
3471
3556
+
Leu
CAA
[ENA]
¢þ
>WENV182540280
OJAH01000108
[OJAH] seawater metagenome; Sea water
3480
3407
-
Gly
TCC
[ENA]
¢þ
>WENV182540279
OJAH01000108
[OJAH] seawater metagenome; Sea water
3612
3527
-
Tyr
GTA
[ENA]
¢þ
>WENV182540283
OJAH01000151
[OJAH] seawater metagenome; Sea water
3681
3757
+
Ile
GAT
[ENA]
¢þ
>WENV182540284
OJAH01000151
[OJAH] seawater metagenome; Sea water
3771
3846
+
Ala
TGC
[ENA]
¢þ
>WENV182540287
OJAH01000185
[OJAH] seawater metagenome; Sea water
4030
3955
-
Ala
TGC
[ENA]
¢þ
>WENV182540278
OJAH01000108
[OJAH] seawater metagenome; Sea water
4521
4596
+
Thr
TGT
[ENA]
¢þ
>WENV182540272
OJAH01000009
[OJAH] seawater metagenome; Sea water
4626
4702
+
Arg
TCG
[ENA]
¢þ
>WENV182540273
OJAH01000057
[OJAH] seawater metagenome; Sea water
5653
5728
+
Val
TAC
[ENA]
¢þ
>WENV182540274
OJAH01000057
[OJAH] seawater metagenome; Sea water
5742
5818
+
Asp
GTC
[ENA]
¢þ
>WENV182540269
OJAH01000006
[OJAH] seawater metagenome; Sea water
6761
6834
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK