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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJAX] seawater metagenome; Sea water
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182542255
OJAX01000177
[OJAX] seawater metagenome; Sea water
4
79
+
Thr
TGT
[ENA]
¢þ
>WENV182542273
OJAX01001636
[OJAX] seawater metagenome; Sea water
49
125
+
Pro
TGG
[ENA]
¢þ
>WENV182542272
OJAX01001383
[OJAX] seawater metagenome; Sea water
72
147
+
Gly
GCC
[ENA]
¢þ
>WENV182542266
OJAX01000935
[OJAX] seawater metagenome; Sea water
83
157
+
Gly
TCC
[ENA]
¢þ
>WENV182542256
OJAX01000177
[OJAX] seawater metagenome; Sea water
140
224
+
Tyr
GTA
[ENA]
¢þ
>WENV182542263
OJAX01000434
[OJAX] seawater metagenome; Sea water
145
69
-
fMet
CAT
[ENA]
¢þ
>WENV182542277
OJAX01001911
[OJAX] seawater metagenome; Sea water
161
234
+
Gly
TCC
[ENA]
¢þ
>WENV182542267
OJAX01000935
[OJAX] seawater metagenome; Sea water
165
240
+
Thr
GGT
[ENA]
¢þ
>WENV182542274
OJAX01001636
[OJAX] seawater metagenome; Sea water
176
252
+
Arg
TCT
[ENA]
¢þ
>WENV182542252
OJAX01000020
[OJAX] seawater metagenome; Sea water
178
253
+
Trp
CCA
[ENA]
¢þ
>WENV182542268
OJAX01001296
[OJAX] seawater metagenome; Sea water
199
274
+
Thr
TGT
[ENA]
¢þ
>WENV182542278
OJAX01001911
[OJAX] seawater metagenome; Sea water
279
354
+
Thr
GGT
[ENA]
¢þ
>WENV182542257
OJAX01000177
[OJAX] seawater metagenome; Sea water
286
359
+
Gly
TCC
[ENA]
¢þ
>WENV182542269
OJAX01001296
[OJAX] seawater metagenome; Sea water
315
398
+
Tyr
GTA
[ENA]
¢þ
>WENV182542275
OJAX01001636
[OJAX] seawater metagenome; Sea water
347
422
+
His
GTG
[ENA]
¢þ
>WENV182542259
OJAX01000268
[OJAX] seawater metagenome; Sea water
359
434
+
Gln
TTG
[ENA]
¢þ
>WENV182542258
OJAX01000177
[OJAX] seawater metagenome; Sea water
376
451
+
Thr
GGT
[ENA]
¢þ
>WENV182542270
OJAX01001296
[OJAX] seawater metagenome; Sea water
409
483
+
Gly
TCC
[ENA]
¢þ
>WENV182542254
OJAX01000165
[OJAX] seawater metagenome; Sea water
421
496
+
Trp
CCA
[ENA]
¢þ
>WENV182542265
OJAX01000809
[OJAX] seawater metagenome; Sea water
429
356
-
Lys
CTT
[ENA]
¢þ
>WENV182542262
OJAX01000434
[OJAX] seawater metagenome; Sea water
441
356
-
Leu
GAG
[ENA]
¢þ
>WENV182542276
OJAX01001636
[OJAX] seawater metagenome; Sea water
478
562
+
Leu
TAG
[ENA]
¢þ
>WENV182542271
OJAX01001296
[OJAX] seawater metagenome; Sea water
502
577
+
Thr
GGT
[ENA]
¢þ
>WENV182542264
OJAX01000808
[OJAX] seawater metagenome; Sea water
860
785
-
Ala
TGC
[ENA]
¢þ
>WENV182542261
OJAX01000289
[OJAX] seawater metagenome; Sea water
1151
1077
-
Gln
TTG
[ENA]
¢þ
>WENV182542260
OJAX01000285
[OJAX] seawater metagenome; Sea water
1345
1420
+
Asn
GTT
[ENA]
¢þ
>WENV182542253
OJAX01000022
[OJAX] seawater metagenome; Sea water
3009
3085
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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