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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJCG] seawater metagenome; Sea water
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182551695
OJCG01002860
[OJCG] seawater metagenome; Sea water
64
140
+
Pro
TGG
[ENA]
¢þ
>WENV182551705
OJCG01002938
[OJCG] seawater metagenome; Sea water
78
3
-
Val
TAC
[ENA]
¢þ
>WENV182551691
OJCG01001382
[OJCG] seawater metagenome; Sea water
120
44
-
Val
GAC
[ENA]
¢þ
>WENV182551689
OJCG01001120
[OJCG] seawater metagenome; Sea water
132
56
-
Arg
GCG
[ENA]
¢þ
>WENV182551672
OJCG01000061
[OJCG] seawater metagenome; Sea water
136
49
-
Ser
GCT
[ENA]
¢þ
>WENV182551696
OJCG01002860
[OJCG] seawater metagenome; Sea water
171
247
+
Arg
TCT
[ENA]
¢þ
>WENV182551704
OJCG01002938
[OJCG] seawater metagenome; Sea water
177
101
-
Asp
GTC
[ENA]
¢þ
>WENV182551690
OJCG01001134
[OJCG] seawater metagenome; Sea water
273
347
+
Gln
TTG
[ENA]
¢þ
>WENV182551697
OJCG01002860
[OJCG] seawater metagenome; Sea water
277
352
+
His
GTG
[ENA]
¢þ
>WENV182551678
OJCG01000416
[OJCG] seawater metagenome; Sea water
286
211
-
Thr
GGT
[ENA]
¢þ
>WENV182551703
OJCG01002938
[OJCG] seawater metagenome; Sea water
287
212
-
Val
TAC
[ENA]
¢þ
>WENV182551698
OJCG01002860
[OJCG] seawater metagenome; Sea water
360
444
+
Leu
TAG
[ENA]
¢þ
>WENV182551702
OJCG01002938
[OJCG] seawater metagenome; Sea water
386
310
-
Asp
GTC
[ENA]
¢þ
>WENV182551673
OJCG01000166
[OJCG] seawater metagenome; Sea water
403
318
-
Leu
GAG
[ENA]
¢þ
>WENV182551677
OJCG01000416
[OJCG] seawater metagenome; Sea water
404
331
-
Gly
TCC
[ENA]
¢þ
>WENV182551700
OJCG01002935
[OJCG] seawater metagenome; Sea water
427
512
+
Leu
GAG
[ENA]
¢þ
>WENV182551699
OJCG01002860
[OJCG] seawater metagenome; Sea water
449
523
+
Gln
TTG
[ENA]
¢þ
>WENV182551701
OJCG01002938
[OJCG] seawater metagenome; Sea water
491
416
-
Val
TAC
[ENA]
¢þ
>WENV182551676
OJCG01000416
[OJCG] seawater metagenome; Sea water
566
483
-
Tyr
GTA
[ENA]
¢þ
>WENV182551694
OJCG01002450
[OJCG] seawater metagenome; Sea water
595
519
-
Pro
GGG
[ENA]
¢þ
>WENV182551693
OJCG01001934
[OJCG] seawater metagenome; Sea water
619
544
-
Lys
TTT
[ENA]
¢þ
>WENV182551675
OJCG01000416
[OJCG] seawater metagenome; Sea water
719
644
-
Thr
TGT
[ENA]
¢þ
>WENV182551692
OJCG01001519
[OJCG] seawater metagenome; Sea water
774
850
+
Met
CAT
[ENA]
¢þ
>WENV182551674
OJCG01000386
[OJCG] seawater metagenome; Sea water
856
931
+
Gln
TTG
[ENA]
¢þ
>WENV182551688
OJCG01000742
[OJCG] seawater metagenome; Sea water
1097
1022
-
Thr
GGT
[ENA]
¢þ
>WENV182551683
OJCG01000484
[OJCG] seawater metagenome; Sea water
1160
1085
-
Trp
CCA
[ENA]
¢þ
>WENV182551687
OJCG01000742
[OJCG] seawater metagenome; Sea water
1178
1104
-
Gly
TCC
[ENA]
¢þ
>WENV182551686
OJCG01000742
[OJCG] seawater metagenome; Sea water
1301
1217
-
Tyr
GTA
[ENA]
¢þ
>WENV182551684
OJCG01000706
[OJCG] seawater metagenome; Sea water
1364
1439
+
Asn
GTT
[ENA]
¢þ
>WENV182551685
OJCG01000742
[OJCG] seawater metagenome; Sea water
1384
1309
-
Thr
TGT
[ENA]
¢þ
>WENV182551681
OJCG01000445
[OJCG] seawater metagenome; Sea water
1636
1561
-
His
GTG
[ENA]
¢þ
>WENV182551682
OJCG01000455
[OJCG] seawater metagenome; Sea water
1734
1818
+
Leu
TAG
[ENA]
¢þ
>WENV182551680
OJCG01000445
[OJCG] seawater metagenome; Sea water
1745
1669
-
Arg
TCT
[ENA]
¢þ
>WENV182551679
OJCG01000445
[OJCG] seawater metagenome; Sea water
1848
1772
-
Pro
TGG
[ENA]
¢þ
>WENV182551670
OJCG01000011
[OJCG] seawater metagenome; Sea water
4470
4545
+
Trp
CCA
[ENA]
¢þ
>WENV182551671
OJCG01000015
[OJCG] seawater metagenome; Sea water
5143
5219
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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