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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJCL] seawater metagenome; Sea water
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182552563
OJCL01000405
[OJCL] seawater metagenome; Sea water
131
56
-
Lys
TTT
[ENA]
¢þ
>WENV182552572
OJCL01001216
[OJCL] seawater metagenome; Sea water
147
222
+
Trp
CCA
[ENA]
¢þ
>WENV182552578
OJCL01001679
[OJCL] seawater metagenome; Sea water
172
96
-
Pro
TGG
[ENA]
¢þ
>WENV182552544
OJCL01000006
[OJCL] seawater metagenome; Sea water
183
257
+
His
GTG
[ENA]
¢þ
>WENV182552579
OJCL01001855
[OJCL] seawater metagenome; Sea water
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV182552555
OJCL01000093
[OJCL] seawater metagenome; Sea water
218
143
-
Phe
GAA
[ENA]
¢þ
>WENV182552564
OJCL01000424
[OJCL] seawater metagenome; Sea water
240
314
+
Arg
TCG
[ENA]
¢þ
>WENV182552574
OJCL01001276
[OJCL] seawater metagenome; Sea water
319
392
+
Cys
GCA
[ENA]
¢þ
>WENV182552580
OJCL01001916
[OJCL] seawater metagenome; Sea water
321
403
+
Tyr
GTA
[ENA]
¢þ
>WENV182552581
OJCL01002048
[OJCL] seawater metagenome; Sea water
355
436
+
Ser
GCT
[ENA]
¢þ
>WENV182552576
OJCL01001567
[OJCL] seawater metagenome; Sea water
384
458
+
Thr
CGT
[ENA]
¢þ
>WENV182552566
OJCL01000581
[OJCL] seawater metagenome; Sea water
409
494
+
Leu
GAG
[ENA]
¢þ
>WENV182552577
OJCL01001674
[OJCL] seawater metagenome; Sea water
425
502
+
Ile
GAT
[ENA]
¢þ
>WENV182552575
OJCL01001276
[OJCL] seawater metagenome; Sea water
443
518
+
Asn
GTT
[ENA]
¢þ
>WENV182552571
OJCL01000987
[OJCL] seawater metagenome; Sea water
477
401
-
fMet
CAT
[ENA]
¢þ
>WENV182552573
OJCL01001260
[OJCL] seawater metagenome; Sea water
568
496
-
Glu
CTC
[ENA]
¢þ
>WENV182552553
OJCL01000055
[OJCL] seawater metagenome; Sea water
656
581
-
Thr
TGT
[ENA]
¢þ
>WENV182552568
OJCL01000632
[OJCL] seawater metagenome; Sea water
834
758
-
His
GTG
[ENA]
¢þ
>WENV182552549
OJCL01000045
[OJCL] seawater metagenome; Sea water
852
768
-
Leu
TAG
[ENA]
¢þ
>WENV182552565
OJCL01000508
[OJCL] seawater metagenome; Sea water
931
842
-
Ser
TGA
[ENA]
¢þ
>WENV182552570
OJCL01000834
[OJCL] seawater metagenome; Sea water
964
1037
+
Cys
GCA
[ENA]
¢þ
>WENV182552569
OJCL01000667
[OJCL] seawater metagenome; Sea water
983
907
-
Pro
TGG
[ENA]
¢þ
>WENV182552567
OJCL01000632
[OJCL] seawater metagenome; Sea water
1073
998
-
Phe
GAA
[ENA]
¢þ
>WENV182552562
OJCL01000402
[OJCL] seawater metagenome; Sea water
1433
1507
+
Gly
GCC
[ENA]
¢þ
>WENV182552550
OJCL01000055
[OJCL] seawater metagenome; Sea water
1565
1650
+
Tyr
GTA
[ENA]
¢þ
>WENV182552558
OJCL01000214
[OJCL] seawater metagenome; Sea water
1618
1694
+
Arg
ACG
[ENA]
¢þ
>WENV182552559
OJCL01000287
[OJCL] seawater metagenome; Sea water
1622
1538
-
Leu
CAA
[ENA]
¢þ
>WENV182552561
OJCL01000385
[OJCL] seawater metagenome; Sea water
1623
1708
+
Leu
CAA
[ENA]
¢þ
>WENV182552560
OJCL01000337
[OJCL] seawater metagenome; Sea water
1630
1554
-
Arg
TCT
[ENA]
¢þ
>WENV182552551
OJCL01000055
[OJCL] seawater metagenome; Sea water
1697
1770
+
Gly
TCC
[ENA]
¢þ
>WENV182552557
OJCL01000210
[OJCL] seawater metagenome; Sea water
2502
2585
+
Leu
TAG
[ENA]
¢þ
>WENV182552556
OJCL01000119
[OJCL] seawater metagenome; Sea water
2915
2841
-
Gly
GCC
[ENA]
¢þ
>WENV182552552
OJCL01000055
[OJCL] seawater metagenome; Sea water
3021
3096
+
Trp
CCA
[ENA]
¢þ
>WENV182552554
OJCL01000093
[OJCL] seawater metagenome; Sea water
4336
4409
+
Thr
GGT
[ENA]
¢þ
>WENV182552543
OJCL01000004
[OJCL] seawater metagenome; Sea water
6183
6259
+
Arg
TCG
[ENA]
¢þ
>WENV182552547
OJCL01000016
[OJCL] seawater metagenome; Sea water
6809
6733
-
Asp
GTC
[ENA]
¢þ
>WENV182552546
OJCL01000016
[OJCL] seawater metagenome; Sea water
6898
6823
-
Val
TAC
[ENA]
¢þ
>WENV182552548
OJCL01000032
[OJCL] seawater metagenome; Sea water
7025
7116
+
Ser
GCT
[ENA]
¢þ
>WENV182552545
OJCL01000008
[OJCL] seawater metagenome; Sea water
10485
10561
+
Ile2
CAT
[ENA]
¢þ
>WENV182552542
OJCL01000001
[OJCL] seawater metagenome; Sea water
28687
28760
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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