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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJCZ] seawater metagenome; Sea water
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182555306
OJCZ01004384
[OJCZ] seawater metagenome; Sea water
50
125
+
Ala
TGC
[ENA]
¢þ
>WENV182555301
OJCZ01002912
[OJCZ] seawater metagenome; Sea water
55
141
+
Leu
CAG
[ENA]
¢þ
>WENV182555272
OJCZ01000088
[OJCZ] seawater metagenome; Sea water
83
7
-
Asp
GTC
[ENA]
¢þ
>WENV182555297
OJCZ01001496
[OJCZ] seawater metagenome; Sea water
91
16
-
Asn
GTT
[ENA]
¢þ
>WENV182555285
OJCZ01000572
[OJCZ] seawater metagenome; Sea water
130
54
-
Met
CAT
[ENA]
¢þ
>WENV182555295
OJCZ01001193
[OJCZ] seawater metagenome; Sea water
138
51
-
Ser
GGA
[ENA]
¢þ
>WENV182555273
OJCZ01000165
[OJCZ] seawater metagenome; Sea water
153
64
-
Ser
GCT
[ENA]
¢þ
>WENV182555300
OJCZ01002223
[OJCZ] seawater metagenome; Sea water
163
87
-
Val
GAC
[ENA]
¢þ
>WENV182555308
OJCZ01004413
[OJCZ] seawater metagenome; Sea water
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV182555289
OJCZ01000763
[OJCZ] seawater metagenome; Sea water
203
128
-
Gly
GCC
[ENA]
¢þ
>WENV182555291
OJCZ01001070
[OJCZ] seawater metagenome; Sea water
208
283
+
Thr
TGT
[ENA]
¢þ
>WENV182555286
OJCZ01000573
[OJCZ] seawater metagenome; Sea water
225
149
-
Ile2
CAT
[ENA]
¢þ
>WENV182555307
OJCZ01004384
[OJCZ] seawater metagenome; Sea water
242
318
+
Ile
GAT
[ENA]
¢þ
>WENV182555299
OJCZ01001509
[OJCZ] seawater metagenome; Sea water
246
173
-
Cys
GCA
[ENA]
¢þ
>WENV182555282
OJCZ01000321
[OJCZ] seawater metagenome; Sea water
273
347
+
Gln
TTG
[ENA]
¢þ
>WENV182555292
OJCZ01001070
[OJCZ] seawater metagenome; Sea water
292
376
+
Tyr
GTA
[ENA]
¢þ
>WENV182555305
OJCZ01004367
[OJCZ] seawater metagenome; Sea water
378
453
+
Val
TAC
[ENA]
¢þ
>WENV182555304
OJCZ01003106
[OJCZ] seawater metagenome; Sea water
411
336
-
His
GTG
[ENA]
¢þ
>WENV182555293
OJCZ01001070
[OJCZ] seawater metagenome; Sea water
411
485
+
Gly
TCC
[ENA]
¢þ
>WENV182555294
OJCZ01001070
[OJCZ] seawater metagenome; Sea water
493
568
+
Thr
GGT
[ENA]
¢þ
>WENV182555303
OJCZ01003106
[OJCZ] seawater metagenome; Sea water
515
439
-
Arg
TCT
[ENA]
¢þ
>WENV182555302
OJCZ01003106
[OJCZ] seawater metagenome; Sea water
618
542
-
Pro
TGG
[ENA]
¢þ
>WENV182555298
OJCZ01001509
[OJCZ] seawater metagenome; Sea water
624
549
-
Gly
GCC
[ENA]
¢þ
>WENV182555290
OJCZ01000940
[OJCZ] seawater metagenome; Sea water
1187
1112
-
Trp
CCA
[ENA]
¢þ
>WENV182555296
OJCZ01001491
[OJCZ] seawater metagenome; Sea water
1253
1178
-
Trp
CCA
[ENA]
¢þ
>WENV182555287
OJCZ01000633
[OJCZ] seawater metagenome; Sea water
2145
2069
-
Asp
GTC
[ENA]
¢þ
>WENV182555288
OJCZ01000687
[OJCZ] seawater metagenome; Sea water
2449
2524
+
Arg
CCT
[ENA]
¢þ
>WENV182555270
OJCZ01000025
[OJCZ] seawater metagenome; Sea water
2656
2581
-
Gln
TTG
[ENA]
¢þ
>WENV182555283
OJCZ01000398
[OJCZ] seawater metagenome; Sea water
3322
3247
-
Trp
CCA
[ENA]
¢þ
>WENV182555284
OJCZ01000406
[OJCZ] seawater metagenome; Sea water
3381
3456
+
Thr
CGT
[ENA]
¢þ
>WENV182555274
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4368
4443
+
Val
TAC
[ENA]
¢þ
>WENV182555275
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4487
4563
+
Asp
GTC
[ENA]
¢þ
>WENV182555279
OJCZ01000193
[OJCZ] seawater metagenome; Sea water
4569
4659
+
Ser
GCT
[ENA]
¢þ
>WENV182555276
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4626
4701
+
Val
TAC
[ENA]
¢þ
>WENV182555277
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4734
4810
+
Asp
GTC
[ENA]
¢þ
>WENV182555280
OJCZ01000193
[OJCZ] seawater metagenome; Sea water
4743
4819
+
Arg
GCG
[ENA]
¢þ
>WENV182555281
OJCZ01000193
[OJCZ] seawater metagenome; Sea water
4864
4940
+
Arg
ACG
[ENA]
¢þ
>WENV182555278
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4970
5045
+
Val
TAC
[ENA]
¢þ
>WENV182555271
OJCZ01000029
[OJCZ] seawater metagenome; Sea water
7062
6977
-
Leu
GAG
[ENA]
¢þ
>WENV182555268
OJCZ01000009
[OJCZ] seawater metagenome; Sea water
12912
12997
+
Leu
GAG
[ENA]
¢þ
>WENV182555269
OJCZ01000009
[OJCZ] seawater metagenome; Sea water
13209
13285
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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