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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJEK] seawater metagenome; Sea water
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182566337
OJEK01002013
[OJEK] seawater metagenome; Sea water
33
108
+
Thr
GGT
[ENA]
¢þ
>WENV182566333
OJEK01000919
[OJEK] seawater metagenome; Sea water
42
114
+
Thr
GGT
[ENA]
¢þ
>WENV182566341
OJEK01006273
[OJEK] seawater metagenome; Sea water
66
151
+
Tyr
GTA
[ENA]
¢þ
>WENV182566345
OJEK01015095
[OJEK] seawater metagenome; Sea water
104
177
+
Ala
TGC
[ENA]
¢þ
>WENV182566342
OJEK01006273
[OJEK] seawater metagenome; Sea water
197
270
+
Gly
TCC
[ENA]
¢þ
>WENV182566344
OJEK01007938
[OJEK] seawater metagenome; Sea water
492
419
-
Trp
CCA
[ENA]
¢þ
>WENV182566343
OJEK01007938
[OJEK] seawater metagenome; Sea water
592
518
-
Thr
GGT
[ENA]
¢þ
>WENV182566339
OJEK01003077
[OJEK] seawater metagenome; Sea water
792
865
+
Trp
CCA
[ENA]
¢þ
>WENV182566340
OJEK01004527
[OJEK] seawater metagenome; Sea water
795
870
+
Trp
CCA
[ENA]
¢þ
>WENV182566338
OJEK01002224
[OJEK] seawater metagenome; Sea water
1142
1067
-
Ala
TGC
[ENA]
¢þ
>WENV182566336
OJEK01001198
[OJEK] seawater metagenome; Sea water
1327
1252
-
Thr
GGT
[ENA]
¢þ
>WENV182566335
OJEK01001198
[OJEK] seawater metagenome; Sea water
1416
1343
-
Gly
TCC
[ENA]
¢þ
>WENV182566334
OJEK01000944
[OJEK] seawater metagenome; Sea water
1554
1481
-
Ala
TGC
[ENA]
¢þ
>WENV182566332
OJEK01000615
[OJEK] seawater metagenome; Sea water
1701
1626
-
Ala
TGC
[ENA]
¢þ
>WENV182566331
OJEK01000615
[OJEK] seawater metagenome; Sea water
1824
1748
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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