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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJFT] seawater metagenome; Sea water
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182575103
OJFT01001117
[OJFT] seawater metagenome; Sea water
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV182575104
OJFT01001538
[OJFT] seawater metagenome; Sea water
105
180
+
Phe
GAA
[ENA]
¢þ
>WENV182575115
OJFT01002834
[OJFT] seawater metagenome; Sea water
107
197
+
Ser
TGA
[ENA]
¢þ
>WENV182575089
OJFT01000305
[OJFT] seawater metagenome; Sea water
121
48
-
Ile2
CAT
[ENA]
¢þ
>WENV182575114
OJFT01002474
[OJFT] seawater metagenome; Sea water
174
99
-
Gly
GCC
[ENA]
¢þ
>WENV182575091
OJFT01000344
[OJFT] seawater metagenome; Sea water
186
110
-
Arg
GCG
[ENA]
¢þ
>WENV182575098
OJFT01000969
[OJFT] seawater metagenome; Sea water
220
307
+
Ser
GGA
[ENA]
¢þ
>WENV182575105
OJFT01001538
[OJFT] seawater metagenome; Sea water
238
313
+
Thr
TGT
[ENA]
¢þ
>WENV182575109
OJFT01002122
[OJFT] seawater metagenome; Sea water
246
321
+
Trp
CCA
[ENA]
¢þ
>WENV182575116
OJFT01002834
[OJFT] seawater metagenome; Sea water
247
339
+
Ser
GCT
[ENA]
¢þ
>WENV182575102
OJFT01001117
[OJFT] seawater metagenome; Sea water
264
188
-
Ile
GAT
[ENA]
¢þ
>WENV182575090
OJFT01000344
[OJFT] seawater metagenome; Sea water
320
231
-
Ser
GCT
[ENA]
¢þ
>WENV182575106
OJFT01001538
[OJFT] seawater metagenome; Sea water
354
438
+
Tyr
GTA
[ENA]
¢þ
>WENV182575117
OJFT01002834
[OJFT] seawater metagenome; Sea water
375
451
+
Arg
GCG
[ENA]
¢þ
>WENV182575113
OJFT01002474
[OJFT] seawater metagenome; Sea water
388
302
-
Leu
TAA
[ENA]
¢þ
>WENV182575111
OJFT01002324
[OJFT] seawater metagenome; Sea water
445
370
-
Ala
TGC
[ENA]
¢þ
>WENV182575107
OJFT01001538
[OJFT] seawater metagenome; Sea water
484
558
+
Gly
TCC
[ENA]
¢þ
>WENV182575112
OJFT01002474
[OJFT] seawater metagenome; Sea water
498
425
-
Cys
GCA
[ENA]
¢þ
>WENV182575077
OJFT01000020
[OJFT] seawater metagenome; Sea water
500
586
+
Leu
GAG
[ENA]
¢þ
>WENV182575099
OJFT01001117
[OJFT] seawater metagenome; Sea water
527
602
+
Ala
TGC
[ENA]
¢þ
>WENV182575110
OJFT01002324
[OJFT] seawater metagenome; Sea water
560
484
-
Ile
GAT
[ENA]
¢þ
>WENV182575108
OJFT01001538
[OJFT] seawater metagenome; Sea water
570
645
+
Thr
GGT
[ENA]
¢þ
>WENV182575100
OJFT01001117
[OJFT] seawater metagenome; Sea water
767
843
+
Ile
GAT
[ENA]
¢þ
>WENV182575095
OJFT01000851
[OJFT] seawater metagenome; Sea water
860
935
+
Gly
GCC
[ENA]
¢þ
>WENV182575101
OJFT01001117
[OJFT] seawater metagenome; Sea water
957
1030
+
Ala
TGC
[ENA]
¢þ
>WENV182575096
OJFT01000851
[OJFT] seawater metagenome; Sea water
980
1053
+
Cys
GCA
[ENA]
¢þ
>WENV182575094
OJFT01000574
[OJFT] seawater metagenome; Sea water
1022
947
-
Thr
GGT
[ENA]
¢þ
>WENV182575097
OJFT01000851
[OJFT] seawater metagenome; Sea water
1098
1184
+
Leu
TAA
[ENA]
¢þ
>WENV182575093
OJFT01000574
[OJFT] seawater metagenome; Sea water
1113
1040
-
Gly
TCC
[ENA]
¢þ
>WENV182575092
OJFT01000574
[OJFT] seawater metagenome; Sea water
1261
1178
-
Tyr
GTA
[ENA]
¢þ
>WENV182575082
OJFT01000039
[OJFT] seawater metagenome; Sea water
1367
1283
-
Ala
AGC
[ENA]
¢þ
>WENV182575078
OJFT01000026
[OJFT] seawater metagenome; Sea water
1467
1542
+
Asn
GTT
[ENA]
¢þ
>WENV182575079
OJFT01000026
[OJFT] seawater metagenome; Sea water
1583
1659
+
Pro
TGG
[ENA]
¢þ
>WENV182575080
OJFT01000026
[OJFT] seawater metagenome; Sea water
1688
1764
+
Arg
TCT
[ENA]
¢þ
>WENV182575084
OJFT01000211
[OJFT] seawater metagenome; Sea water
1751
1826
+
Ala
GGC
[ENA]
¢þ
>WENV182575081
OJFT01000026
[OJFT] seawater metagenome; Sea water
1805
1880
+
His
GTG
[ENA]
¢þ
>WENV182575085
OJFT01000211
[OJFT] seawater metagenome; Sea water
1850
1925
+
Glu
TTC
[ENA]
¢þ
>WENV182575088
OJFT01000213
[OJFT] seawater metagenome; Sea water
1967
1893
-
Gln
TTG
[ENA]
¢þ
>WENV182575086
OJFT01000211
[OJFT] seawater metagenome; Sea water
2115
2190
+
Gly
GCC
[ENA]
¢þ
>WENV182575087
OJFT01000211
[OJFT] seawater metagenome; Sea water
2293
2368
+
Glu
TTC
[ENA]
¢þ
>WENV182575083
OJFT01000113
[OJFT] seawater metagenome; Sea water
3246
3171
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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