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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGB] seawater metagenome; Sea water
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182576947
OJGB01002059
[OJGB] seawater metagenome; Sea water
5
89
+
Leu
TAG
[ENA]
¢þ
>WENV182576954
OJGB01002370
[OJGB] seawater metagenome; Sea water
76
1
-
Ala
TGC
[ENA]
¢þ
>WENV182576937
OJGB01001550
[OJGB] seawater metagenome; Sea water
104
179
+
Ala
GGC
[ENA]
¢þ
>WENV182576940
OJGB01001702
[OJGB] seawater metagenome; Sea water
151
227
+
fMet
CAT
[ENA]
¢þ
>WENV182576942
OJGB01001809
[OJGB] seawater metagenome; Sea water
171
96
-
Lys
TTT
[ENA]
¢þ
>WENV182576948
OJGB01002059
[OJGB] seawater metagenome; Sea water
174
250
+
Met
CAT
[ENA]
¢þ
>WENV182576936
OJGB01000979
[OJGB] seawater metagenome; Sea water
196
121
-
Thr
GGT
[ENA]
¢þ
>WENV182576953
OJGB01002370
[OJGB] seawater metagenome; Sea water
266
190
-
Ile
GAT
[ENA]
¢þ
>WENV182576955
OJGB01002465
[OJGB] seawater metagenome; Sea water
275
201
-
Ile
GAT
[ENA]
¢þ
>WENV182576935
OJGB01000979
[OJGB] seawater metagenome; Sea water
278
204
-
Gly
TCC
[ENA]
¢þ
>WENV182576938
OJGB01001550
[OJGB] seawater metagenome; Sea water
283
358
+
Glu
TTC
[ENA]
¢þ
>WENV182576949
OJGB01002059
[OJGB] seawater metagenome; Sea water
313
397
+
Leu
TAG
[ENA]
¢þ
>WENV182576946
OJGB01002046
[OJGB] seawater metagenome; Sea water
351
276
-
Ala
TGC
[ENA]
¢þ
>WENV182576934
OJGB01000979
[OJGB] seawater metagenome; Sea water
396
312
-
Tyr
GTA
[ENA]
¢þ
>WENV182576951
OJGB01002316
[OJGB] seawater metagenome; Sea water
404
319
-
Leu
GAG
[ENA]
¢þ
>WENV182576950
OJGB01002059
[OJGB] seawater metagenome; Sea water
440
514
+
Gln
TTG
[ENA]
¢þ
>WENV182576941
OJGB01001702
[OJGB] seawater metagenome; Sea water
462
538
+
fMet
CAT
[ENA]
¢þ
>WENV182576945
OJGB01002046
[OJGB] seawater metagenome; Sea water
472
396
-
Met
CAT
[ENA]
¢þ
>WENV182576933
OJGB01000979
[OJGB] seawater metagenome; Sea water
479
404
-
Thr
TGT
[ENA]
¢þ
>WENV182576952
OJGB01002370
[OJGB] seawater metagenome; Sea water
506
431
-
Ala
TGC
[ENA]
¢þ
>WENV182576939
OJGB01001550
[OJGB] seawater metagenome; Sea water
549
624
+
Glu
TTC
[ENA]
¢þ
>WENV182576944
OJGB01002046
[OJGB] seawater metagenome; Sea water
561
486
-
Gly
GCC
[ENA]
¢þ
>WENV182576943
OJGB01001917
[OJGB] seawater metagenome; Sea water
581
506
-
Gln
TTG
[ENA]
¢þ
>WENV182576932
OJGB01000979
[OJGB] seawater metagenome; Sea water
657
582
-
Phe
GAA
[ENA]
¢þ
>WENV182576929
OJGB01000177
[OJGB] seawater metagenome; Sea water
734
659
-
Trp
CCA
[ENA]
¢þ
>WENV182576930
OJGB01000725
[OJGB] seawater metagenome; Sea water
895
821
-
Gln
TTG
[ENA]
¢þ
>WENV182576931
OJGB01000782
[OJGB] seawater metagenome; Sea water
972
897
-
Trp
CCA
[ENA]
¢þ
>WENV182576928
OJGB01000177
[OJGB] seawater metagenome; Sea water
2223
2148
-
Thr
GGT
[ENA]
¢þ
>WENV182576927
OJGB01000177
[OJGB] seawater metagenome; Sea water
2341
2268
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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