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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGF] seawater metagenome; Sea water
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182577495
OJGF01007997
[OJGF] seawater metagenome; Sea water
21
96
+
Trp
CCA
[ENA]
¢þ
>WENV182577483
OJGF01004017
[OJGF] seawater metagenome; Sea water
64
140
+
Ile
GAT
[ENA]
¢þ
>WENV182577457
OJGF01000845
[OJGF] seawater metagenome; Sea water
75
1
-
Val
GAC
[ENA]
¢þ
>WENV182577462
OJGF01001137
[OJGF] seawater metagenome; Sea water
100
186
+
Leu
CAG
[ENA]
¢þ
>WENV182577452
OJGF01000567
[OJGF] seawater metagenome; Sea water
113
41
-
Cys
GCA
[ENA]
¢þ
>WENV182577491
OJGF01005508
[OJGF] seawater metagenome; Sea water
118
42
-
Arg
ACG
[ENA]
¢þ
>WENV182577477
OJGF01003392
[OJGF] seawater metagenome; Sea water
134
46
-
Ser
CGA
[ENA]
¢þ
>WENV182577446
OJGF01000182
[OJGF] seawater metagenome; Sea water
134
58
-
Met
CAT
[ENA]
¢þ
>WENV182577488
OJGF01004842
[OJGF] seawater metagenome; Sea water
134
210
+
Ile
GAT
[ENA]
¢þ
>WENV182577475
OJGF01003061
[OJGF] seawater metagenome; Sea water
135
220
+
Leu
GAG
[ENA]
¢þ
>WENV182577445
OJGF01000117
[OJGF] seawater metagenome; Sea water
138
63
-
Phe
GAA
[ENA]
¢þ
>WENV182577496
OJGF01008763
[OJGF] seawater metagenome; Sea water
148
224
+
Pro
TGG
[ENA]
¢þ
>WENV182577499
OJGF01009227
[OJGF] seawater metagenome; Sea water
155
231
+
Ile
GAT
[ENA]
¢þ
>WENV182577465
OJGF01001555
[OJGF] seawater metagenome; Sea water
173
245
+
Thr
GGT
[ENA]
¢þ
>WENV182577484
OJGF01004017
[OJGF] seawater metagenome; Sea water
173
248
+
Ala
TGC
[ENA]
¢þ
>WENV182577451
OJGF01000567
[OJGF] seawater metagenome; Sea water
236
161
-
Gly
GCC
[ENA]
¢þ
>WENV182577489
OJGF01004842
[OJGF] seawater metagenome; Sea water
239
314
+
Ala
TGC
[ENA]
¢þ
>WENV182577500
OJGF01009227
[OJGF] seawater metagenome; Sea water
249
324
+
Ala
TGC
[ENA]
¢þ
>WENV182577474
OJGF01002396
[OJGF] seawater metagenome; Sea water
266
342
+
Pro
GGG
[ENA]
¢þ
>WENV182577497
OJGF01008763
[OJGF] seawater metagenome; Sea water
275
351
+
Arg
TCT
[ENA]
¢þ
>WENV182577490
OJGF01005508
[OJGF] seawater metagenome; Sea water
289
197
-
Ser
GCT
[ENA]
¢þ
>WENV182577494
OJGF01007995
[OJGF] seawater metagenome; Sea water
302
226
-
Ala
TGC
[ENA]
¢þ
>WENV182577464
OJGF01001192
[OJGF] seawater metagenome; Sea water
353
428
+
Gln
TTG
[ENA]
¢þ
>WENV182577449
OJGF01000485
[OJGF] seawater metagenome; Sea water
399
315
-
Ala
AGC
[ENA]
¢þ
>WENV182577461
OJGF01000905
[OJGF] seawater metagenome; Sea water
404
329
-
Thr
GGT
[ENA]
¢þ
>WENV182577476
OJGF01003061
[OJGF] seawater metagenome; Sea water
432
508
+
fMet
CAT
[ENA]
¢þ
>WENV182577498
OJGF01008763
[OJGF] seawater metagenome; Sea water
448
520
+
His
GTG
[ENA]
¢þ
>WENV182577493
OJGF01007995
[OJGF] seawater metagenome; Sea water
455
381
-
Ile
GAT
[ENA]
¢þ
>WENV182577485
OJGF01004619
[OJGF] seawater metagenome; Sea water
480
555
+
Phe
GAA
[ENA]
¢þ
>WENV182577460
OJGF01000905
[OJGF] seawater metagenome; Sea water
522
449
-
Gly
TCC
[ENA]
¢þ
>WENV182577486
OJGF01004619
[OJGF] seawater metagenome; Sea water
562
636
+
Gln
TTG
[ENA]
¢þ
>WENV182577492
OJGF01006443
[OJGF] seawater metagenome; Sea water
674
588
-
Leu
CAA
[ENA]
¢þ
>WENV182577459
OJGF01000905
[OJGF] seawater metagenome; Sea water
684
601
-
Tyr
GTA
[ENA]
¢þ
>WENV182577468
OJGF01001856
[OJGF] seawater metagenome; Sea water
706
782
+
Arg
CCG
[ENA]
¢þ
>WENV182577487
OJGF01004619
[OJGF] seawater metagenome; Sea water
709
784
+
Thr
TGT
[ENA]
¢þ
>WENV182577458
OJGF01000905
[OJGF] seawater metagenome; Sea water
837
762
-
Thr
TGT
[ENA]
¢þ
>WENV182577481
OJGF01003649
[OJGF] seawater metagenome; Sea water
855
930
+
Glu
TTC
[ENA]
¢þ
>WENV182577479
OJGF01003575
[OJGF] seawater metagenome; Sea water
877
803
-
Thr
GGT
[ENA]
¢þ
>WENV182577473
OJGF01002354
[OJGF] seawater metagenome; Sea water
925
1001
+
Arg
TCT
[ENA]
¢þ
>WENV182577482
OJGF01003649
[OJGF] seawater metagenome; Sea water
965
1037
+
Gly
GCC
[ENA]
¢þ
>WENV182577478
OJGF01003575
[OJGF] seawater metagenome; Sea water
967
894
-
Gly
TCC
[ENA]
¢þ
>WENV182577480
OJGF01003587
[OJGF] seawater metagenome; Sea water
1005
930
-
Trp
CCA
[ENA]
¢þ
>WENV182577463
OJGF01001182
[OJGF] seawater metagenome; Sea water
1182
1106
-
Pro
TGG
[ENA]
¢þ
>WENV182577470
OJGF01002210
[OJGF] seawater metagenome; Sea water
1333
1260
-
Gly
TCC
[ENA]
¢þ
>WENV182577471
OJGF01002235
[OJGF] seawater metagenome; Sea water
1411
1336
-
Thr
GGT
[ENA]
¢þ
>WENV182577454
OJGF01000603
[OJGF] seawater metagenome; Sea water
1430
1354
-
Asp
GTC
[ENA]
¢þ
>WENV182577469
OJGF01002210
[OJGF] seawater metagenome; Sea water
1455
1371
-
Tyr
GTA
[ENA]
¢þ
>WENV182577472
OJGF01002253
[OJGF] seawater metagenome; Sea water
1518
1442
-
Arg
CCT
[ENA]
¢þ
>WENV182577453
OJGF01000603
[OJGF] seawater metagenome; Sea water
1542
1467
-
Val
TAC
[ENA]
¢þ
>WENV182577450
OJGF01000528
[OJGF] seawater metagenome; Sea water
1562
1649
+
Ser
GGA
[ENA]
¢þ
>WENV182577455
OJGF01000612
[OJGF] seawater metagenome; Sea water
1576
1487
-
Ser
GGA
[ENA]
¢þ
>WENV182577466
OJGF01001555
[OJGF] seawater metagenome; Sea water
1609
1682
+
Trp
CCA
[ENA]
¢þ
>WENV182577467
OJGF01001588
[OJGF] seawater metagenome; Sea water
1815
1890
+
Thr
CGT
[ENA]
¢þ
>WENV182577439
OJGF01000023
[OJGF] seawater metagenome; Sea water
1822
1897
+
Lys
TTT
[ENA]
¢þ
>WENV182577440
OJGF01000031
[OJGF] seawater metagenome; Sea water
1953
2029
+
Ile2
CAT
[ENA]
¢þ
>WENV182577456
OJGF01000692
[OJGF] seawater metagenome; Sea water
3059
3134
+
Val
TAC
[ENA]
¢þ
>WENV182577448
OJGF01000423
[OJGF] seawater metagenome; Sea water
4121
4046
-
Glu
TTC
[ENA]
¢þ
>WENV182577447
OJGF01000218
[OJGF] seawater metagenome; Sea water
5510
5435
-
Trp
CCA
[ENA]
¢þ
>WENV182577444
OJGF01000106
[OJGF] seawater metagenome; Sea water
6261
6186
-
His
GTG
[ENA]
¢þ
>WENV182577443
OJGF01000106
[OJGF] seawater metagenome; Sea water
6370
6294
-
Arg
TCT
[ENA]
¢þ
>WENV182577441
OJGF01000100
[OJGF] seawater metagenome; Sea water
6397
6473
+
Pro
CGG
[ENA]
¢þ
>WENV182577442
OJGF01000106
[OJGF] seawater metagenome; Sea water
6473
6397
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK