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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGI] seawater metagenome; Sea water
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182577786
OJGI01000405
[OJGI] seawater metagenome; Sea water
82
7
-
Thr
CGT
[ENA]
¢þ
>WENV182577800
OJGI01001698
[OJGI] seawater metagenome; Sea water
96
171
+
Thr
GGT
[ENA]
¢þ
>WENV182577787
OJGI01000836
[OJGI] seawater metagenome; Sea water
122
46
-
Ile2
CAT
[ENA]
¢þ
>WENV182577789
OJGI01000922
[OJGI] seawater metagenome; Sea water
138
62
-
Arg
GCG
[ENA]
¢þ
>WENV182577806
OJGI01002777
[OJGI] seawater metagenome; Sea water
150
225
+
Ala
TGC
[ENA]
¢þ
>WENV182577807
OJGI01003540
[OJGI] seawater metagenome; Sea water
158
72
-
Leu
GAG
[ENA]
¢þ
>WENV182577780
OJGI01000081
[OJGI] seawater metagenome; Sea water
161
86
-
Lys
TTT
[ENA]
¢þ
>WENV182577791
OJGI01001068
[OJGI] seawater metagenome; Sea water
172
247
+
Thr
TGT
[ENA]
¢þ
>WENV182577808
OJGI01004686
[OJGI] seawater metagenome; Sea water
183
266
+
Tyr
GTA
[ENA]
¢þ
>WENV182577783
OJGI01000321
[OJGI] seawater metagenome; Sea water
199
124
-
Gly
GCC
[ENA]
¢þ
>WENV182577792
OJGI01001068
[OJGI] seawater metagenome; Sea water
288
372
+
Tyr
GTA
[ENA]
¢þ
>WENV182577813
OJGI01005148
[OJGI] seawater metagenome; Sea water
302
226
-
Ala
TGC
[ENA]
¢þ
>WENV182577788
OJGI01000922
[OJGI] seawater metagenome; Sea water
312
220
-
Ser
GCT
[ENA]
¢þ
>WENV182577809
OJGI01004686
[OJGI] seawater metagenome; Sea water
345
418
+
Gly
TCC
[ENA]
¢þ
>WENV182577781
OJGI01000111
[OJGI] seawater metagenome; Sea water
376
291
-
Leu
GAG
[ENA]
¢þ
>WENV182577793
OJGI01001068
[OJGI] seawater metagenome; Sea water
396
469
+
Gly
TCC
[ENA]
¢þ
>WENV182577812
OJGI01005148
[OJGI] seawater metagenome; Sea water
455
381
-
Ile
GAT
[ENA]
¢þ
>WENV182577810
OJGI01004686
[OJGI] seawater metagenome; Sea water
463
538
+
Thr
GGT
[ENA]
¢þ
>WENV182577794
OJGI01001068
[OJGI] seawater metagenome; Sea water
486
560
+
Thr
GGT
[ENA]
¢þ
>WENV182577796
OJGI01001109
[OJGI] seawater metagenome; Sea water
573
649
+
Arg
CCT
[ENA]
¢þ
>WENV182577785
OJGI01000404
[OJGI] seawater metagenome; Sea water
583
508
-
Trp
CCA
[ENA]
¢þ
>WENV182577782
OJGI01000211
[OJGI] seawater metagenome; Sea water
620
545
-
Thr
CGT
[ENA]
¢þ
>WENV182577811
OJGI01004885
[OJGI] seawater metagenome; Sea water
649
725
+
Asp
GTC
[ENA]
¢þ
>WENV182577802
OJGI01002449
[OJGI] seawater metagenome; Sea water
698
624
-
Gln
TTG
[ENA]
¢þ
>WENV182577805
OJGI01002496
[OJGI] seawater metagenome; Sea water
754
682
-
Thr
GGT
[ENA]
¢þ
>WENV182577803
OJGI01002492
[OJGI] seawater metagenome; Sea water
836
920
+
Ala
AGC
[ENA]
¢þ
>WENV182577804
OJGI01002496
[OJGI] seawater metagenome; Sea water
896
823
-
Gly
TCC
[ENA]
¢þ
>WENV182577790
OJGI01001017
[OJGI] seawater metagenome; Sea water
987
1061
+
Asn
GTT
[ENA]
¢þ
>WENV182577801
OJGI01001855
[OJGI] seawater metagenome; Sea water
1287
1362
+
Val
TAC
[ENA]
¢þ
>WENV182577798
OJGI01001336
[OJGI] seawater metagenome; Sea water
1524
1598
+
Gln
TTG
[ENA]
¢þ
>WENV182577799
OJGI01001336
[OJGI] seawater metagenome; Sea water
1671
1746
+
Thr
TGT
[ENA]
¢þ
>WENV182577779
OJGI01000030
[OJGI] seawater metagenome; Sea water
1702
1615
-
Ser
GGA
[ENA]
¢þ
>WENV182577784
OJGI01000352
[OJGI] seawater metagenome; Sea water
1796
1707
-
Ser
GGA
[ENA]
¢þ
>WENV182577797
OJGI01001128
[OJGI] seawater metagenome; Sea water
1828
1904
+
Pro
CGG
[ENA]
¢þ
>WENV182577795
OJGI01001068
[OJGI] seawater metagenome; Sea water
1851
1926
+
Trp
CCA
[ENA]
¢þ
>WENV182577778
OJGI01000025
[OJGI] seawater metagenome; Sea water
7892
7803
-
Ser
GCT
[ENA]
¢þ
>WENV182577777
OJGI01000019
[OJGI] seawater metagenome; Sea water
9021
8945
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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