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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGK] seawater metagenome; Sea water
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182577842
OJGK01002002
[OJGK] seawater metagenome; Sea water
49
124
+
Gly
GCC
[ENA]
¢þ
>WENV182577832
OJGK01000326
[OJGK] seawater metagenome; Sea water
93
167
+
Gly
TCC
[ENA]
¢þ
>WENV182577845
OJGK01002132
[OJGK] seawater metagenome; Sea water
133
57
-
Ile2
CAT
[ENA]
¢þ
>WENV182577829
OJGK01000130
[OJGK] seawater metagenome; Sea water
134
59
-
Thr
CGT
[ENA]
¢þ
>WENV182577838
OJGK01000825
[OJGK] seawater metagenome; Sea water
150
75
-
Arg
ACG
[ENA]
¢þ
>WENV182577843
OJGK01002002
[OJGK] seawater metagenome; Sea water
179
252
+
Cys
GCA
[ENA]
¢þ
>WENV182577833
OJGK01000326
[OJGK] seawater metagenome; Sea water
186
261
+
Thr
GGT
[ENA]
¢þ
>WENV182577839
OJGK01001510
[OJGK] seawater metagenome; Sea water
187
270
+
Tyr
GTA
[ENA]
¢þ
>WENV182577830
OJGK01000155
[OJGK] seawater metagenome; Sea water
328
252
-
Ile2
CAT
[ENA]
¢þ
>WENV182577840
OJGK01001510
[OJGK] seawater metagenome; Sea water
349
422
+
Gly
TCC
[ENA]
¢þ
>WENV182577844
OJGK01002002
[OJGK] seawater metagenome; Sea water
386
472
+
Leu
TAA
[ENA]
¢þ
>WENV182577847
OJGK01002146
[OJGK] seawater metagenome; Sea water
432
357
-
Ala
TGC
[ENA]
¢þ
>WENV182577841
OJGK01001510
[OJGK] seawater metagenome; Sea water
467
542
+
Thr
GGT
[ENA]
¢þ
>WENV182577846
OJGK01002146
[OJGK] seawater metagenome; Sea water
526
450
-
Ile
GAT
[ENA]
¢þ
>WENV182577827
OJGK01000068
[OJGK] seawater metagenome; Sea water
582
667
+
Leu
GAG
[ENA]
¢þ
>WENV182577835
OJGK01000334
[OJGK] seawater metagenome; Sea water
842
916
+
Asn
GTT
[ENA]
¢þ
>WENV182577828
OJGK01000068
[OJGK] seawater metagenome; Sea water
877
953
+
fMet
CAT
[ENA]
¢þ
>WENV182577837
OJGK01000534
[OJGK] seawater metagenome; Sea water
1252
1327
+
Val
TAC
[ENA]
¢þ
>WENV182577836
OJGK01000354
[OJGK] seawater metagenome; Sea water
1321
1398
+
Leu
TAA
[ENA]
¢þ
>WENV182577834
OJGK01000326
[OJGK] seawater metagenome; Sea water
1561
1636
+
Trp
CCA
[ENA]
¢þ
>WENV182577831
OJGK01000166
[OJGK] seawater metagenome; Sea water
2126
2051
-
Gln
TTG
[ENA]
¢þ
>WENV182577826
OJGK01000008
[OJGK] seawater metagenome; Sea water
5137
5213
+
Asp
GTC
[ENA]
¢þ
>WENV182577825
OJGK01000001
[OJGK] seawater metagenome; Sea water
5533
5458
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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