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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OJGR] seawater metagenome; Sea water
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182578989
OJGR01000685
[OJGR] seawater metagenome; Sea water
92
168
+
Ile
GAT
[ENA]
¢þ
>WENV182578994
OJGR01001113
[OJGR] seawater metagenome; Sea water
148
64
-
Ala
AGC
[ENA]
¢þ
>WENV182578990
OJGR01000685
[OJGR] seawater metagenome; Sea water
174
249
+
Ala
TGC
[ENA]
¢þ
>WENV182578996
OJGR01001882
[OJGR] seawater metagenome; Sea water
416
491
+
Trp
CCA
[ENA]
¢þ
>WENV182578995
OJGR01001838
[OJGR] seawater metagenome; Sea water
475
549
+
Cys
GCA
[ENA]
¢þ
>WENV182578993
OJGR01000832
[OJGR] seawater metagenome; Sea water
480
555
+
Trp
CCA
[ENA]
¢þ
>WENV182578991
OJGR01000804
[OJGR] seawater metagenome; Sea water
582
669
+
Ser
CGA
[ENA]
¢þ
>WENV182578992
OJGR01000804
[OJGR] seawater metagenome; Sea water
737
824
+
Ser
GGA
[ENA]
¢þ
>WENV182578988
OJGR01000444
[OJGR] seawater metagenome; Sea water
1159
1085
-
Val
GAC
[ENA]
¢þ
>WENV182578987
OJGR01000002
[OJGR] seawater metagenome; Sea water
13023
12949
-
Thr
GGT
[ENA]
¢þ
>WENV182578986
OJGR01000002
[OJGR] seawater metagenome; Sea water
13110
13035
-
Gly
TCC
[ENA]
¢þ
>WENV182578985
OJGR01000002
[OJGR] seawater metagenome; Sea water
13250
13166
-
Tyr
GTA
[ENA]
¢þ
>WENV182578984
OJGR01000002
[OJGR] seawater metagenome; Sea water
13371
13296
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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