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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJGV] seawater metagenome; Sea water
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182580298
OJGV01000101
[OJGV] seawater metagenome; Sea water
71
147
+
Arg
CCT
[ENA]
¢þ
>WENV182580324
OJGV01002956
[OJGV] seawater metagenome; Sea water
94
170
+
Pro
TGG
[ENA]
¢þ
>WENV182580315
OJGV01001841
[OJGV] seawater metagenome; Sea water
95
20
-
Thr
TGT
[ENA]
¢þ
>WENV182580310
OJGV01001707
[OJGV] seawater metagenome; Sea water
121
196
+
Phe
GAA
[ENA]
¢þ
>WENV182580293
OJGV01000036
[OJGV] seawater metagenome; Sea water
136
61
-
Phe
GAA
[ENA]
¢þ
>WENV182580303
OJGV01000301
[OJGV] seawater metagenome; Sea water
171
95
-
Asp
GTC
[ENA]
¢þ
>WENV182580323
OJGV01002282
[OJGV] seawater metagenome; Sea water
194
118
-
Met
CAT
[ENA]
¢þ
>WENV182580302
OJGV01000301
[OJGV] seawater metagenome; Sea water
251
176
-
Val
TAC
[ENA]
¢þ
>WENV182580322
OJGV01002282
[OJGV] seawater metagenome; Sea water
289
215
-
Gln
TTG
[ENA]
¢þ
>WENV182580311
OJGV01001707
[OJGV] seawater metagenome; Sea water
298
373
+
Thr
TGT
[ENA]
¢þ
>WENV182580312
OJGV01001707
[OJGV] seawater metagenome; Sea water
418
502
+
Tyr
GTA
[ENA]
¢þ
>WENV182580318
OJGV01002060
[OJGV] seawater metagenome; Sea water
420
345
-
Ala
TGC
[ENA]
¢þ
>WENV182580321
OJGV01002282
[OJGV] seawater metagenome; Sea water
422
338
-
Leu
TAG
[ENA]
¢þ
>WENV182580308
OJGV01001181
[OJGV] seawater metagenome; Sea water
473
558
+
Leu
GAG
[ENA]
¢þ
>WENV182580313
OJGV01001707
[OJGV] seawater metagenome; Sea water
529
602
+
Gly
TCC
[ENA]
¢þ
>WENV182580320
OJGV01002282
[OJGV] seawater metagenome; Sea water
539
464
-
His
GTG
[ENA]
¢þ
>WENV182580317
OJGV01002060
[OJGV] seawater metagenome; Sea water
546
470
-
Ile
GAT
[ENA]
¢þ
>WENV182580299
OJGV01000218
[OJGV] seawater metagenome; Sea water
583
659
+
Val
GAC
[ENA]
¢þ
>WENV182580314
OJGV01001707
[OJGV] seawater metagenome; Sea water
618
693
+
Thr
GGT
[ENA]
¢þ
>WENV182580319
OJGV01002282
[OJGV] seawater metagenome; Sea water
634
558
-
Arg
TCT
[ENA]
¢þ
>WENV182580307
OJGV01000839
[OJGV] seawater metagenome; Sea water
641
565
-
Pro
GGG
[ENA]
¢þ
>WENV182580316
OJGV01001964
[OJGV] seawater metagenome; Sea water
659
733
+
Gln
TTG
[ENA]
¢þ
>WENV182580309
OJGV01001477
[OJGV] seawater metagenome; Sea water
814
899
+
Leu
TAA
[ENA]
¢þ
>WENV182580306
OJGV01000510
[OJGV] seawater metagenome; Sea water
1192
1276
+
Ala
AGC
[ENA]
¢þ
>WENV182580294
OJGV01000052
[OJGV] seawater metagenome; Sea water
1405
1330
-
Thr
CGT
[ENA]
¢þ
>WENV182580300
OJGV01000256
[OJGV] seawater metagenome; Sea water
1623
1714
+
Ser
GCT
[ENA]
¢þ
>WENV182580305
OJGV01000456
[OJGV] seawater metagenome; Sea water
1861
1936
+
Trp
CCA
[ENA]
¢þ
>WENV182580301
OJGV01000283
[OJGV] seawater metagenome; Sea water
2032
1956
-
Met
CAT
[ENA]
¢þ
>WENV182580296
OJGV01000071
[OJGV] seawater metagenome; Sea water
2644
2571
-
Cys
GCA
[ENA]
¢þ
>WENV182580304
OJGV01000349
[OJGV] seawater metagenome; Sea water
2713
2788
+
Asn
GTT
[ENA]
¢þ
>WENV182580295
OJGV01000071
[OJGV] seawater metagenome; Sea water
2767
2693
-
Gly
GCC
[ENA]
¢þ
>WENV182580291
OJGV01000010
[OJGV] seawater metagenome; Sea water
3746
3659
-
Ser
GGA
[ENA]
¢þ
>WENV182580289
OJGV01000009
[OJGV] seawater metagenome; Sea water
4396
4472
+
Arg
CCG
[ENA]
¢þ
>WENV182580292
OJGV01000023
[OJGV] seawater metagenome; Sea water
5476
5401
-
Lys
TTT
[ENA]
¢þ
>WENV182580297
OJGV01000088
[OJGV] seawater metagenome; Sea water
6124
6048
-
fMet
CAT
[ENA]
¢þ
>WENV182580290
OJGV01000009
[OJGV] seawater metagenome; Sea water
7511
7435
-
Arg
CCG
[ENA]
¢þ
>WENV182580288
OJGV01000008
[OJGV] seawater metagenome; Sea water
11980
11905
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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