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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJHR] seawater metagenome; Sea water
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182588319
OJHR01002568
[OJHR] seawater metagenome; Sea water
9
85
+
fMet
CAT
[ENA]
¢þ
>WENV182588306
OJHR01001090
[OJHR] seawater metagenome; Sea water
47
121
+
Gln
TTG
[ENA]
¢þ
>WENV182588336
OJHR01005256
[OJHR] seawater metagenome; Sea water
63
138
+
Gln
TTG
[ENA]
¢þ
>WENV182588316
OJHR01002403
[OJHR] seawater metagenome; Sea water
87
3
-
Leu
TAA
[ENA]
¢þ
>WENV182588293
OJHR01000356
[OJHR] seawater metagenome; Sea water
123
49
-
Val
GAC
[ENA]
¢þ
>WENV182588287
OJHR01000155
[OJHR] seawater metagenome; Sea water
145
61
-
Leu
GAG
[ENA]
¢þ
>WENV182588333
OJHR01004339
[OJHR] seawater metagenome; Sea water
147
221
+
Gly
TCC
[ENA]
¢þ
>WENV182588344
OJHR01006267
[OJHR] seawater metagenome; Sea water
152
66
-
Leu
TAA
[ENA]
¢þ
>WENV182588337
OJHR01005855
[OJHR] seawater metagenome; Sea water
155
238
+
Tyr
GTA
[ENA]
¢þ
>WENV182588300
OJHR01000756
[OJHR] seawater metagenome; Sea water
161
85
-
Arg
TCT
[ENA]
¢þ
>WENV182588284
OJHR01000032
[OJHR] seawater metagenome; Sea water
161
234
+
Gly
TCC
[ENA]
¢þ
>WENV182588340
OJHR01005909
[OJHR] seawater metagenome; Sea water
161
252
+
Ser
GCT
[ENA]
¢þ
>WENV182588289
OJHR01000213
[OJHR] seawater metagenome; Sea water
164
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182588315
OJHR01002403
[OJHR] seawater metagenome; Sea water
167
94
-
Cys
GCA
[ENA]
¢þ
>WENV182588305
OJHR01000977
[OJHR] seawater metagenome; Sea water
192
116
-
Arg
GCG
[ENA]
¢þ
>WENV182588301
OJHR01000766
[OJHR] seawater metagenome; Sea water
204
293
+
Ser
GGA
[ENA]
¢þ
>WENV182588326
OJHR01003200
[OJHR] seawater metagenome; Sea water
216
300
+
Leu
TAG
[ENA]
¢þ
>WENV182588335
OJHR01004378
[OJHR] seawater metagenome; Sea water
234
309
+
Thr
TGT
[ENA]
¢þ
>WENV182588334
OJHR01004339
[OJHR] seawater metagenome; Sea water
238
313
+
Thr
GGT
[ENA]
¢þ
>WENV182588330
OJHR01003409
[OJHR] seawater metagenome; Sea water
240
165
-
Trp
CCA
[ENA]
¢þ
>WENV182588320
OJHR01002588
[OJHR] seawater metagenome; Sea water
262
336
+
Gln
TTG
[ENA]
¢þ
>WENV182588343
OJHR01006267
[OJHR] seawater metagenome; Sea water
270
197
-
Cys
GCA
[ENA]
¢þ
>WENV182588332
OJHR01003506
[OJHR] seawater metagenome; Sea water
278
207
-
Arg
TCG
[ENA]
¢þ
>WENV182588299
OJHR01000756
[OJHR] seawater metagenome; Sea water
280
204
-
Pro
TGG
[ENA]
¢þ
>WENV182588285
OJHR01000032
[OJHR] seawater metagenome; Sea water
286
361
+
Thr
GGT
[ENA]
¢þ
>WENV182588314
OJHR01002403
[OJHR] seawater metagenome; Sea water
305
230
-
Gly
GCC
[ENA]
¢þ
>WENV182588338
OJHR01005855
[OJHR] seawater metagenome; Sea water
320
393
+
Gly
TCC
[ENA]
¢þ
>WENV182588325
OJHR01002978
[OJHR] seawater metagenome; Sea water
327
252
-
Glu
TTC
[ENA]
¢þ
>WENV182588317
OJHR01002456
[OJHR] seawater metagenome; Sea water
327
402
+
Ala
TGC
[ENA]
¢þ
>WENV182588341
OJHR01005909
[OJHR] seawater metagenome; Sea water
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV182588327
OJHR01003200
[OJHR] seawater metagenome; Sea water
385
461
+
Met
CAT
[ENA]
¢þ
>WENV182588304
OJHR01000977
[OJHR] seawater metagenome; Sea water
389
300
-
Ser
GCT
[ENA]
¢þ
>WENV182588342
OJHR01006267
[OJHR] seawater metagenome; Sea water
390
315
-
Gly
GCC
[ENA]
¢þ
>WENV182588298
OJHR01000756
[OJHR] seawater metagenome; Sea water
405
330
-
His
GTG
[ENA]
¢þ
>WENV182588339
OJHR01005855
[OJHR] seawater metagenome; Sea water
412
487
+
Thr
GGT
[ENA]
¢þ
>WENV182588318
OJHR01002456
[OJHR] seawater metagenome; Sea water
437
513
+
Ile
GAT
[ENA]
¢þ
>WENV182588324
OJHR01002978
[OJHR] seawater metagenome; Sea water
506
431
-
Ala
GGC
[ENA]
¢þ
>WENV182588331
OJHR01003506
[OJHR] seawater metagenome; Sea water
508
579
+
Arg
TCG
[ENA]
¢þ
>WENV182588321
OJHR01002654
[OJHR] seawater metagenome; Sea water
523
606
+
Tyr
GTA
[ENA]
¢þ
>WENV182588328
OJHR01003200
[OJHR] seawater metagenome; Sea water
524
608
+
Leu
TAG
[ENA]
¢þ
>WENV182588313
OJHR01002239
[OJHR] seawater metagenome; Sea water
565
475
-
Ser
TGA
[ENA]
¢þ
>WENV182588329
OJHR01003200
[OJHR] seawater metagenome; Sea water
651
725
+
Gln
TTG
[ENA]
¢þ
>WENV182588322
OJHR01002654
[OJHR] seawater metagenome; Sea water
671
744
+
Gly
TCC
[ENA]
¢þ
>WENV182588303
OJHR01000969
[OJHR] seawater metagenome; Sea water
704
780
+
Arg
CCG
[ENA]
¢þ
>WENV182588310
OJHR01001230
[OJHR] seawater metagenome; Sea water
708
624
-
Ala
AGC
[ENA]
¢þ
>WENV182588323
OJHR01002654
[OJHR] seawater metagenome; Sea water
762
837
+
Thr
GGT
[ENA]
¢þ
>WENV182588307
OJHR01001099
[OJHR] seawater metagenome; Sea water
1195
1108
-
Ser
GGA
[ENA]
¢þ
>WENV182588288
OJHR01000156
[OJHR] seawater metagenome; Sea water
1238
1162
-
Arg
CCG
[ENA]
¢þ
>WENV182588311
OJHR01001300
[OJHR] seawater metagenome; Sea water
1250
1174
-
Trp
CCA
[ENA]
¢þ
>WENV182588277
OJHR01000010
[OJHR] seawater metagenome; Sea water
1263
1338
+
Trp
CCA
[ENA]
¢þ
>WENV182588312
OJHR01001617
[OJHR] seawater metagenome; Sea water
1422
1346
-
Ile
GAT
[ENA]
¢þ
>WENV182588295
OJHR01000601
[OJHR] seawater metagenome; Sea water
1577
1652
+
Asn
GTT
[ENA]
¢þ
>WENV182588309
OJHR01001157
[OJHR] seawater metagenome; Sea water
1609
1534
-
Thr
GGT
[ENA]
¢þ
>WENV182588308
OJHR01001157
[OJHR] seawater metagenome; Sea water
1795
1722
-
Gly
TCC
[ENA]
¢þ
>WENV182588296
OJHR01000722
[OJHR] seawater metagenome; Sea water
2426
2501
+
Val
TAC
[ENA]
¢þ
>WENV182588302
OJHR01000784
[OJHR] seawater metagenome; Sea water
2519
2595
+
Asp
GTC
[ENA]
¢þ
>WENV182588297
OJHR01000722
[OJHR] seawater metagenome; Sea water
2606
2681
+
Val
TAC
[ENA]
¢þ
>WENV182588294
OJHR01000439
[OJHR] seawater metagenome; Sea water
3137
3063
-
Gln
TTG
[ENA]
¢þ
>WENV182588286
OJHR01000049
[OJHR] seawater metagenome; Sea water
3599
3524
-
Phe
GAA
[ENA]
¢þ
>WENV182588292
OJHR01000313
[OJHR] seawater metagenome; Sea water
3891
3967
+
Pro
GGG
[ENA]
¢þ
>WENV182588291
OJHR01000255
[OJHR] seawater metagenome; Sea water
5276
5360
+
Leu
CAA
[ENA]
¢þ
>WENV182588290
OJHR01000234
[OJHR] seawater metagenome; Sea water
5644
5719
+
Lys
TTT
[ENA]
¢þ
>WENV182588283
OJHR01000021
[OJHR] seawater metagenome; Sea water
11948
11873
-
Trp
CCA
[ENA]
¢þ
>WENV182588282
OJHR01000021
[OJHR] seawater metagenome; Sea water
13429
13354
-
Thr
GGT
[ENA]
¢þ
>WENV182588281
OJHR01000021
[OJHR] seawater metagenome; Sea water
13515
13441
-
Gly
TCC
[ENA]
¢þ
>WENV182588280
OJHR01000021
[OJHR] seawater metagenome; Sea water
13644
13560
-
Tyr
GTA
[ENA]
¢þ
>WENV182588279
OJHR01000021
[OJHR] seawater metagenome; Sea water
13760
13685
-
Thr
TGT
[ENA]
¢þ
>WENV182588278
OJHR01000021
[OJHR] seawater metagenome; Sea water
13893
13818
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK