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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJIA] seawater metagenome; Sea water
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182589196
OJIA01000823
[OJIA] seawater metagenome; Sea water
51
126
+
Ala
GGC
[ENA]
¢þ
>WENV182589199
OJIA01001411
[OJIA] seawater metagenome; Sea water
69
153
+
Leu
TAG
[ENA]
¢þ
>WENV182589197
OJIA01001257
[OJIA] seawater metagenome; Sea water
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV182589181
OJIA01000004
[OJIA] seawater metagenome; Sea water
102
177
+
Trp
CCA
[ENA]
¢þ
>WENV182589201
OJIA01001547
[OJIA] seawater metagenome; Sea water
108
184
+
Pro
CGG
[ENA]
¢þ
>WENV182589191
OJIA01000363
[OJIA] seawater metagenome; Sea water
137
212
+
Thr
GGT
[ENA]
¢þ
>WENV182589186
OJIA01000226
[OJIA] seawater metagenome; Sea water
193
276
+
Tyr
GTA
[ENA]
¢þ
>WENV182589192
OJIA01000366
[OJIA] seawater metagenome; Sea water
198
114
-
Leu
GAG
[ENA]
¢þ
>WENV182589182
OJIA01000067
[OJIA] seawater metagenome; Sea water
314
389
+
Gln
TTG
[ENA]
¢þ
>WENV182589187
OJIA01000226
[OJIA] seawater metagenome; Sea water
315
388
+
Gly
TCC
[ENA]
¢þ
>WENV182589203
OJIA01002146
[OJIA] seawater metagenome; Sea water
325
250
-
Ala
TGC
[ENA]
¢þ
>WENV182589200
OJIA01001542
[OJIA] seawater metagenome; Sea water
353
429
+
Asp
GTC
[ENA]
¢þ
>WENV182589194
OJIA01000584
[OJIA] seawater metagenome; Sea water
359
434
+
Gln
TTG
[ENA]
¢þ
>WENV182589188
OJIA01000226
[OJIA] seawater metagenome; Sea water
418
493
+
Thr
GGT
[ENA]
¢þ
>WENV182589202
OJIA01002146
[OJIA] seawater metagenome; Sea water
419
343
-
Ile
GAT
[ENA]
¢þ
>WENV182589204
OJIA01002191
[OJIA] seawater metagenome; Sea water
486
411
-
Gln
TTG
[ENA]
¢þ
>WENV182589198
OJIA01001354
[OJIA] seawater metagenome; Sea water
535
611
+
Thr
CGT
[ENA]
¢þ
>WENV182589195
OJIA01000645
[OJIA] seawater metagenome; Sea water
687
612
-
Asn
GTT
[ENA]
¢þ
>WENV182589193
OJIA01000396
[OJIA] seawater metagenome; Sea water
1197
1272
+
Glu
TTC
[ENA]
¢þ
>WENV182589189
OJIA01000312
[OJIA] seawater metagenome; Sea water
1204
1289
+
Leu
GAG
[ENA]
¢þ
>WENV182589190
OJIA01000318
[OJIA] seawater metagenome; Sea water
1427
1502
+
Gly
GCC
[ENA]
¢þ
>WENV182589183
OJIA01000084
[OJIA] seawater metagenome; Sea water
2170
2246
+
Ile2
CAT
[ENA]
¢þ
>WENV182589185
OJIA01000133
[OJIA] seawater metagenome; Sea water
2272
2186
-
Leu
TAA
[ENA]
¢þ
>WENV182589184
OJIA01000105
[OJIA] seawater metagenome; Sea water
2557
2473
-
Leu
TAG
[ENA]
¢þ
>WENV182589180
OJIA01000001
[OJIA] seawater metagenome; Sea water
3315
3240
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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