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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OJIM] seawater metagenome; Sea water
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182591357
OJIM01002097
[OJIM] seawater metagenome; Sea water
71
145
+
Ile
GAT
[ENA]
¢þ
>WENV182591360
OJIM01002649
[OJIM] seawater metagenome; Sea water
109
179
+
Trp
CCA
[ENA]
¢þ
>WENV182591367
OJIM01002867
[OJIM] seawater metagenome; Sea water
113
189
+
Ile
GAT
[ENA]
¢þ
>WENV182591356
OJIM01002016
[OJIM] seawater metagenome; Sea water
115
41
-
Val
CAC
[ENA]
¢þ
>WENV182591354
OJIM01000715
[OJIM] seawater metagenome; Sea water
142
53
-
Ser
GGA
[ENA]
¢þ
>WENV182591358
OJIM01002097
[OJIM] seawater metagenome; Sea water
156
230
+
Ala
TGC
[ENA]
¢þ
>WENV182591362
OJIM01002661
[OJIM] seawater metagenome; Sea water
177
252
+
Trp
CCA
[ENA]
¢þ
>WENV182591342
OJIM01000089
[OJIM] seawater metagenome; Sea water
182
107
-
Asn
GTT
[ENA]
¢þ
>WENV182591361
OJIM01002649
[OJIM] seawater metagenome; Sea water
191
265
+
Asn
GTT
[ENA]
¢þ
>WENV182591369
OJIM01003034
[OJIM] seawater metagenome; Sea water
199
274
+
Trp
CCA
[ENA]
¢þ
>WENV182591346
OJIM01000490
[OJIM] seawater metagenome; Sea water
215
139
-
Arg
TCT
[ENA]
¢þ
>WENV182591365
OJIM01002721
[OJIM] seawater metagenome; Sea water
233
158
-
Gly
GCC
[ENA]
¢þ
>WENV182591370
OJIM01003034
[OJIM] seawater metagenome; Sea water
295
382
+
Ser
TGA
[ENA]
¢þ
>WENV182591364
OJIM01002721
[OJIM] seawater metagenome; Sea water
311
236
-
Glu
TTC
[ENA]
¢þ
>WENV182591368
OJIM01002867
[OJIM] seawater metagenome; Sea water
323
398
+
Ala
TGC
[ENA]
¢þ
>WENV182591366
OJIM01002859
[OJIM] seawater metagenome; Sea water
381
456
+
Val
TAC
[ENA]
¢þ
>WENV182591359
OJIM01002514
[OJIM] seawater metagenome; Sea water
460
535
+
Trp
CCA
[ENA]
¢þ
>WENV182591363
OJIM01002721
[OJIM] seawater metagenome; Sea water
465
390
-
Ala
GGC
[ENA]
¢þ
>WENV182591347
OJIM01000523
[OJIM] seawater metagenome; Sea water
579
663
+
Tyr
GTA
[ENA]
¢þ
>WENV182591355
OJIM01001524
[OJIM] seawater metagenome; Sea water
594
679
+
Leu
GAG
[ENA]
¢þ
>WENV182591348
OJIM01000523
[OJIM] seawater metagenome; Sea water
687
760
+
Gly
TCC
[ENA]
¢þ
>WENV182591349
OJIM01000523
[OJIM] seawater metagenome; Sea water
787
862
+
Thr
GGT
[ENA]
¢þ
>WENV182591344
OJIM01000167
[OJIM] seawater metagenome; Sea water
1066
992
-
Gln
TTG
[ENA]
¢þ
>WENV182591353
OJIM01000654
[OJIM] seawater metagenome; Sea water
1067
991
-
Ile
GAT
[ENA]
¢þ
>WENV182591351
OJIM01000567
[OJIM] seawater metagenome; Sea water
1093
1177
+
Leu
TAA
[ENA]
¢þ
>WENV182591352
OJIM01000654
[OJIM] seawater metagenome; Sea water
1171
1096
-
Ala
TGC
[ENA]
¢þ
>WENV182591350
OJIM01000560
[OJIM] seawater metagenome; Sea water
1177
1102
-
Thr
GGT
[ENA]
¢þ
>WENV182591345
OJIM01000416
[OJIM] seawater metagenome; Sea water
1394
1469
+
Ile
GAT
[ENA]
¢þ
>WENV182591343
OJIM01000092
[OJIM] seawater metagenome; Sea water
2892
2978
+
Leu
CAG
[ENA]
¢þ
>WENV182591341
OJIM01000004
[OJIM] seawater metagenome; Sea water
9493
9568
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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