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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJJR] metagenome; faeces
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182605506
OJJR01000007
[OJJR] metagenome; faeces
47
122
+
Ala
GGC
[ENA]
¢þ
>WENV182605560
OJJR01000031
[OJJR] metagenome; faeces
50
126
+
Asp
GTC
[ENA]
¢þ
>WENV182605602
OJJR01006378
[OJJR] metagenome; faeces
101
176
+
Lys
CTT
[ENA]
¢þ
>WENV182605603
OJJR01007265
[OJJR] metagenome; faeces
132
206
+
Asn
GTT
[ENA]
¢þ
>WENV182605559
OJJR01000029
[OJJR] metagenome; faeces
134
209
+
Thr
GGT
[ENA]
¢þ
>WENV182605595
OJJR01005442
[OJJR] metagenome; faeces
147
219
+
Thr
TGT
[ENA]
¢þ
>WENV182605507
OJJR01000007
[OJJR] metagenome; faeces
162
237
+
Ala
GGC
[ENA]
¢þ
>WENV182605594
OJJR01005172
[OJJR] metagenome; faeces
219
290
+
Gln
TTG
[ENA]
¢þ
>WENV182605604
OJJR01007265
[OJJR] metagenome; faeces
236
310
+
Asn
GTT
[ENA]
¢þ
>WENV182605599
OJJR01005550
[OJJR] metagenome; faeces
238
164
-
Arg
TCT
[ENA]
¢þ
>WENV182605596
OJJR01005442
[OJJR] metagenome; faeces
239
310
+
Gly
GCC
[ENA]
¢þ
>WENV182605581
OJJR01000732
[OJJR] metagenome; faeces
252
177
-
Val
TAC
[ENA]
¢þ
>WENV182605578
OJJR01000494
[OJJR] metagenome; faeces
258
331
+
Lys
TTT
[ENA]
¢þ
>WENV182605601
OJJR01005760
[OJJR] metagenome; faeces
260
176
-
Leu
TAA
[ENA]
¢þ
>WENV182605591
OJJR01004088
[OJJR] metagenome; faeces
285
360
+
Glu
TTC
[ENA]
¢þ
>WENV182605597
OJJR01005442
[OJJR] metagenome; faeces
318
403
+
Leu
TAA
[ENA]
¢þ
>WENV182605600
OJJR01005760
[OJJR] metagenome; faeces
349
276
-
Gly
GCC
[ENA]
¢þ
>WENV182605593
OJJR01004125
[OJJR] metagenome; faeces
357
282
-
Ala
TGC
[ENA]
¢þ
>WENV182605598
OJJR01005442
[OJJR] metagenome; faeces
413
486
+
Arg
ACG
[ENA]
¢þ
>WENV182605589
OJJR01003696
[OJJR] metagenome; faeces
434
508
+
Thr
TGT
[ENA]
¢þ
>WENV182605574
OJJR01000066
[OJJR] metagenome; faeces
452
377
-
Thr
GGT
[ENA]
¢þ
>WENV182605592
OJJR01004125
[OJJR] metagenome; faeces
476
400
-
Ile
GAT
[ENA]
¢þ
>WENV182605590
OJJR01004069
[OJJR] metagenome; faeces
510
436
-
Ala
TGC
[ENA]
¢þ
>WENV182605587
OJJR01002890
[OJJR] metagenome; faeces
528
451
-
Leu
TAA
[ENA]
¢þ
>WENV182605573
OJJR01000066
[OJJR] metagenome; faeces
533
459
-
Gly
TCC
[ENA]
¢þ
>WENV182605586
OJJR01002274
[OJJR] metagenome; faeces
552
480
-
Thr
GGT
[ENA]
¢þ
>WENV182605582
OJJR01000851
[OJJR] metagenome; faeces
597
673
+
Ile
GAT
[ENA]
¢þ
>WENV182605584
OJJR01000903
[OJJR] metagenome; faeces
664
590
-
Thr
GGT
[ENA]
¢þ
>WENV182605588
OJJR01002982
[OJJR] metagenome; faeces
705
632
-
fMet
CAT
[ENA]
¢þ
>WENV182605585
OJJR01002274
[OJJR] metagenome; faeces
726
643
-
Tyr
GTA
[ENA]
¢þ
>WENV182605583
OJJR01000851
[OJJR] metagenome; faeces
727
802
+
Ala
TGC
[ENA]
¢þ
>WENV182605572
OJJR01000066
[OJJR] metagenome; faeces
734
650
-
Tyr
GTA
[ENA]
¢þ
>WENV182605571
OJJR01000066
[OJJR] metagenome; faeces
818
743
-
Thr
TGT
[ENA]
¢þ
>WENV182605580
OJJR01000558
[OJJR] metagenome; faeces
828
754
-
Ala
TGC
[ENA]
¢þ
>WENV182605577
OJJR01000179
[OJJR] metagenome; faeces
905
830
-
Ile2
CAT
[ENA]
¢þ
>WENV182605579
OJJR01000558
[OJJR] metagenome; faeces
984
910
-
Ile
GAT
[ENA]
¢þ
>WENV182605517
OJJR01000012
[OJJR] metagenome; faeces
1838
1763
-
Phe
GAA
[ENA]
¢þ
>WENV182605568
OJJR01000057
[OJJR] metagenome; faeces
2078
2152
+
Ala
TGC
[ENA]
¢þ
>WENV182605575
OJJR01000084
[OJJR] metagenome; faeces
2784
2857
+
Phe
GAA
[ENA]
¢þ
>WENV182605576
OJJR01000084
[OJJR] metagenome; faeces
2870
2943
+
Pro
CGG
[ENA]
¢þ
>WENV182605566
OJJR01000052
[OJJR] metagenome; faeces
3258
3334
+
Ile
GAT
[ENA]
¢þ
>WENV182605567
OJJR01000052
[OJJR] metagenome; faeces
3397
3471
+
Ala
TGC
[ENA]
¢þ
>WENV182605565
OJJR01000043
[OJJR] metagenome; faeces
5587
5512
-
Asn
GTT
[ENA]
¢þ
>WENV182605569
OJJR01000057
[OJJR] metagenome; faeces
5610
5684
+
Val
TAC
[ENA]
¢þ
>WENV182605570
OJJR01000057
[OJJR] metagenome; faeces
5709
5781
+
Asp
GTC
[ENA]
¢þ
>WENV182605531
OJJR01000016
[OJJR] metagenome; faeces
6408
6321
-
Ser
GGA
[ENA]
¢þ
>WENV182605564
OJJR01000043
[OJJR] metagenome; faeces
7995
7920
-
Asn
GTT
[ENA]
¢þ
>WENV182605561
OJJR01000031
[OJJR] metagenome; faeces
8053
8129
+
Asp
GTC
[ENA]
¢þ
>WENV182605563
OJJR01000043
[OJJR] metagenome; faeces
9744
9819
+
Asn
GTT
[ENA]
¢þ
>WENV182605524
OJJR01000014
[OJJR] metagenome; faeces
14988
14913
-
Phe
GAA
[ENA]
¢þ
>WENV182605505
OJJR01000004
[OJJR] metagenome; faeces
17403
17327
-
Pro
GGG
[ENA]
¢þ
>WENV182605557
OJJR01000025
[OJJR] metagenome; faeces
19279
19193
-
Leu
CAG
[ENA]
¢þ
>WENV182605556
OJJR01000025
[OJJR] metagenome; faeces
19400
19314
-
Leu
CAG
[ENA]
¢þ
>WENV182605555
OJJR01000025
[OJJR] metagenome; faeces
19515
19429
-
Leu
CAG
[ENA]
¢þ
>WENV182605513
OJJR01000012
[OJJR] metagenome; faeces
31559
31634
+
Gly
GCC
[ENA]
¢þ
>WENV182605514
OJJR01000012
[OJJR] metagenome; faeces
31671
31746
+
Gly
GCC
[ENA]
¢þ
>WENV182605515
OJJR01000012
[OJJR] metagenome; faeces
31782
31857
+
Gly
GCC
[ENA]
¢þ
>WENV182605532
OJJR01000018
[OJJR] metagenome; faeces
32796
32872
+
Met
CAT
[ENA]
¢þ
>WENV182605533
OJJR01000018
[OJJR] metagenome; faeces
32882
32966
+
Leu
TAG
[ENA]
¢þ
>WENV182605534
OJJR01000018
[OJJR] metagenome; faeces
32990
33064
+
Gln
TTG
[ENA]
¢þ
>WENV182605535
OJJR01000018
[OJJR] metagenome; faeces
33099
33173
+
Gln
TTG
[ENA]
¢þ
>WENV182605536
OJJR01000018
[OJJR] metagenome; faeces
33189
33265
+
Met
CAT
[ENA]
¢þ
>WENV182605537
OJJR01000018
[OJJR] metagenome; faeces
33313
33387
+
Gln
CTG
[ENA]
¢þ
>WENV182605538
OJJR01000018
[OJJR] metagenome; faeces
33425
33499
+
Gln
CTG
[ENA]
¢þ
>WENV182605558
OJJR01000028
[OJJR] metagenome; faeces
38206
38282
+
Arg
TCT
[ENA]
¢þ
>WENV182605508
OJJR01000007
[OJJR] metagenome; faeces
40405
40331
-
Arg
CCT
[ENA]
¢þ
>WENV182605548
OJJR01000021
[OJJR] metagenome; faeces
41482
41406
-
Pro
CGG
[ENA]
¢þ
>WENV182605562
OJJR01000031
[OJJR] metagenome; faeces
42753
42828
+
Thr
CGT
[ENA]
¢þ
>WENV182605509
OJJR01000008
[OJJR] metagenome; faeces
44051
44137
+
Leu
GAG
[ENA]
¢þ
>WENV182605510
OJJR01000008
[OJJR] metagenome; faeces
47920
47996
+
fMet
CAT
[ENA]
¢þ
>WENV182605554
OJJR01000022
[OJJR] metagenome; faeces
52477
52401
-
Pro
TGG
[ENA]
¢þ
>WENV182605553
OJJR01000022
[OJJR] metagenome; faeces
52606
52520
-
Leu
CAG
[ENA]
¢þ
>WENV182605552
OJJR01000022
[OJJR] metagenome; faeces
52702
52627
-
His
GTG
[ENA]
¢þ
>WENV182605551
OJJR01000022
[OJJR] metagenome; faeces
52837
52761
-
Arg
CCG
[ENA]
¢þ
>WENV182605539
OJJR01000019
[OJJR] metagenome; faeces
59538
59630
+
Ser
GCT
[ENA]
¢þ
>WENV182605540
OJJR01000019
[OJJR] metagenome; faeces
59634
59710
+
Arg
ACG
[ENA]
¢þ
>WENV182605541
OJJR01000019
[OJJR] metagenome; faeces
59909
59985
+
Arg
ACG
[ENA]
¢þ
>WENV182605542
OJJR01000019
[OJJR] metagenome; faeces
60048
60124
+
Arg
ACG
[ENA]
¢þ
>WENV182605543
OJJR01000019
[OJJR] metagenome; faeces
60323
60399
+
Arg
ACG
[ENA]
¢þ
>WENV182605545
OJJR01000020
[OJJR] metagenome; faeces
60372
60448
+
fMet
CAT
[ENA]
¢þ
>WENV182605546
OJJR01000020
[OJJR] metagenome; faeces
60482
60558
+
fMet
CAT
[ENA]
¢þ
>WENV182605547
OJJR01000020
[OJJR] metagenome; faeces
60592
60668
+
fMet
CAT
[ENA]
¢þ
>WENV182605496
OJJR01000002
[OJJR] metagenome; faeces
62089
62176
+
Ser
TGA
[ENA]
¢þ
>WENV182605512
OJJR01000009
[OJJR] metagenome; faeces
68612
68706
+
SeC
TCA
[ENA]
¢þ
>WENV182605550
OJJR01000022
[OJJR] metagenome; faeces
88257
88182
-
Trp
CCA
[ENA]
¢þ
>WENV182605549
OJJR01000022
[OJJR] metagenome; faeces
88342
88266
-
Asp
GTC
[ENA]
¢þ
>WENV182605544
OJJR01000019
[OJJR] metagenome; faeces
92353
92428
+
Ile2
CAT
[ENA]
¢þ
>WENV182605522
OJJR01000013
[OJJR] metagenome; faeces
94625
94541
-
Tyr
GTA
[ENA]
¢þ
>WENV182605521
OJJR01000013
[OJJR] metagenome; faeces
94919
94835
-
Tyr
GTA
[ENA]
¢þ
>WENV182605489
OJJR01000001
[OJJR] metagenome; faeces
96460
96536
+
Val
GAC
[ENA]
¢þ
>WENV182605490
OJJR01000001
[OJJR] metagenome; faeces
96541
96617
+
Val
GAC
[ENA]
¢þ
>WENV182605523
OJJR01000014
[OJJR] metagenome; faeces
127943
128016
+
Gly
CCC
[ENA]
¢þ
>WENV182605530
OJJR01000015
[OJJR] metagenome; faeces
134525
134450
-
Lys
TTT
[ENA]
¢þ
>WENV182605529
OJJR01000015
[OJJR] metagenome; faeces
134605
134530
-
Val
TAC
[ENA]
¢þ
>WENV182605528
OJJR01000015
[OJJR] metagenome; faeces
134727
134652
-
Val
TAC
[ENA]
¢þ
>WENV182605527
OJJR01000015
[OJJR] metagenome; faeces
134847
134772
-
Val
TAC
[ENA]
¢þ
>WENV182605518
OJJR01000013
[OJJR] metagenome; faeces
135821
135896
+
Ile2
CAT
[ENA]
¢þ
>WENV182605519
OJJR01000013
[OJJR] metagenome; faeces
135904
135980
+
Arg
TCG
[ENA]
¢þ
>WENV182605520
OJJR01000013
[OJJR] metagenome; faeces
135994
136070
+
Arg
TCT
[ENA]
¢þ
>WENV182605516
OJJR01000012
[OJJR] metagenome; faeces
137112
137196
+
Leu
CAA
[ENA]
¢þ
>WENV182605525
OJJR01000015
[OJJR] metagenome; faeces
137547
137622
+
Ala
GGC
[ENA]
¢þ
>WENV182605526
OJJR01000015
[OJJR] metagenome; faeces
137662
137737
+
Ala
GGC
[ENA]
¢þ
>WENV182605511
OJJR01000008
[OJJR] metagenome; faeces
152915
152840
-
Ile2
CAT
[ENA]
¢þ
>WENV182605497
OJJR01000002
[OJJR] metagenome; faeces
167828
167915
+
Ser
GGA
[ENA]
¢þ
>WENV182605504
OJJR01000002
[OJJR] metagenome; faeces
335789
335714
-
Lys
TTT
[ENA]
¢þ
>WENV182605503
OJJR01000002
[OJJR] metagenome; faeces
335997
335922
-
Lys
TTT
[ENA]
¢þ
>WENV182605502
OJJR01000002
[OJJR] metagenome; faeces
336219
336144
-
Lys
TTT
[ENA]
¢þ
>WENV182605501
OJJR01000002
[OJJR] metagenome; faeces
336298
336223
-
Val
TAC
[ENA]
¢þ
>WENV182605500
OJJR01000002
[OJJR] metagenome; faeces
336523
336448
-
Lys
TTT
[ENA]
¢þ
>WENV182605499
OJJR01000002
[OJJR] metagenome; faeces
336601
336526
-
Val
TAC
[ENA]
¢þ
>WENV182605498
OJJR01000002
[OJJR] metagenome; faeces
336812
336737
-
Lys
TTT
[ENA]
¢þ
>WENV182605495
OJJR01000001
[OJJR] metagenome; faeces
341151
341065
-
Leu
TAA
[ENA]
¢þ
>WENV182605494
OJJR01000001
[OJJR] metagenome; faeces
341237
341164
-
Cys
GCA
[ENA]
¢þ
>WENV182605493
OJJR01000001
[OJJR] metagenome; faeces
341367
341292
-
Gly
GCC
[ENA]
¢þ
>WENV182605492
OJJR01000001
[OJJR] metagenome; faeces
393286
393197
-
Ser
CGA
[ENA]
¢þ
>WENV182605491
OJJR01000001
[OJJR] metagenome; faeces
394278
394353
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK