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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJKT] metagenome; surface
HIT:
100 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182629610
OJKT01004445
[OJKT] metagenome; surface
5
80
+
Gly
GCC
[ENA]
¢þ
>WENV182629626
OJKT01005629
[OJKT] metagenome; surface
56
128
+
Arg
CCT
[ENA]
¢þ
>WENV182629623
OJKT01005613
[OJKT] metagenome; surface
68
144
+
Arg
TCT
[ENA]
¢þ
>WENV182629599
OJKT01003095
[OJKT] metagenome; surface
76
149
+
Arg
CCT
[ENA]
¢þ
>WENV182629587
OJKT01001301
[OJKT] metagenome; surface
105
180
+
Thr
GGT
[ENA]
¢þ
>WENV182629633
OJKT01006345
[OJKT] metagenome; surface
107
20
-
Ser
CGA
[ENA]
¢þ
>WENV182629618
OJKT01004652
[OJKT] metagenome; surface
118
44
-
Lys
TTT
[ENA]
¢þ
>WENV182629567
OJKT01000323
[OJKT] metagenome; surface
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV182629598
OJKT01003029
[OJKT] metagenome; surface
143
55
-
Ser
GGA
[ENA]
¢þ
>WENV182629609
OJKT01004286
[OJKT] metagenome; surface
149
73
-
Ala
GGC
[ENA]
¢þ
>WENV182629624
OJKT01005613
[OJKT] metagenome; surface
150
225
+
His
GTG
[ENA]
¢þ
>WENV182629640
OJKT01007585
[OJKT] metagenome; surface
156
85
-
Glu
CTC
[ENA]
¢þ
>WENV182629621
OJKT01005274
[OJKT] metagenome; surface
160
234
+
Gly
TCC
[ENA]
¢þ
>WENV182629635
OJKT01006578
[OJKT] metagenome; surface
183
110
-
Ala
GGC
[ENA]
¢þ
>WENV182629595
OJKT01002918
[OJKT] metagenome; surface
189
115
-
Pro
GGG
[ENA]
¢þ
>WENV182629611
OJKT01004561
[OJKT] metagenome; surface
195
120
-
Ile2
CAT
[ENA]
¢þ
>WENV182629617
OJKT01004652
[OJKT] metagenome; surface
199
124
-
Thr
TGT
[ENA]
¢þ
>WENV182629591
OJKT01001556
[OJKT] metagenome; surface
202
126
-
Ile
GAT
[ENA]
¢þ
>WENV182629596
OJKT01002944
[OJKT] metagenome; surface
205
121
-
Leu
TAG
[ENA]
¢þ
>WENV182629577
OJKT01000566
[OJKT] metagenome; surface
207
290
+
Tyr
GTA
[ENA]
¢þ
>WENV182629588
OJKT01001301
[OJKT] metagenome; surface
218
291
+
Met
CAT
[ENA]
¢þ
>WENV182629600
OJKT01003295
[OJKT] metagenome; surface
225
307
+
Tyr
GTA
[ENA]
¢þ
>WENV182629625
OJKT01005613
[OJKT] metagenome; surface
233
309
+
Pro
CGG
[ENA]
¢þ
>WENV182629634
OJKT01006555
[OJKT] metagenome; surface
234
309
+
Arg
TCT
[ENA]
¢þ
>WENV182629641
OJKT01008803
[OJKT] metagenome; surface
248
176
-
fMet
CAT
[ENA]
¢þ
>WENV182629628
OJKT01005796
[OJKT] metagenome; surface
248
333
+
Ser
CGA
[ENA]
¢þ
>WENV182629620
OJKT01004697
[OJKT] metagenome; surface
260
337
+
Pro
TGG
[ENA]
¢þ
>WENV182629616
OJKT01004652
[OJKT] metagenome; surface
281
207
-
Phe
GAA
[ENA]
¢þ
>WENV182629629
OJKT01005999
[OJKT] metagenome; surface
293
368
+
Pro
GGG
[ENA]
¢þ
>WENV182629594
OJKT01002653
[OJKT] metagenome; surface
294
368
+
Val
CAC
[ENA]
¢þ
>WENV182629556
OJKT01000060
[OJKT] metagenome; surface
303
228
-
Arg
TCG
[ENA]
¢þ
>WENV182629590
OJKT01001556
[OJKT] metagenome; surface
316
244
-
Asn
GTT
[ENA]
¢þ
>WENV182629578
OJKT01000566
[OJKT] metagenome; surface
327
400
+
Gly
TCC
[ENA]
¢þ
>WENV182629643
OJKT01009986
[OJKT] metagenome; surface
336
409
+
Gly
CCC
[ENA]
¢þ
>WENV182629638
OJKT01007469
[OJKT] metagenome; surface
344
268
-
Pro
CGG
[ENA]
¢þ
>WENV182629615
OJKT01004652
[OJKT] metagenome; surface
359
286
-
fMet
CAT
[ENA]
¢þ
>WENV182629642
OJKT01009239
[OJKT] metagenome; surface
362
272
-
Ser
CGA
[ENA]
¢þ
>WENV182629571
OJKT01000392
[OJKT] metagenome; surface
369
296
-
Phe
GAA
[ENA]
¢þ
>WENV182629603
OJKT01003991
[OJKT] metagenome; surface
407
481
+
fMet
CAT
[ENA]
¢þ
>WENV182629579
OJKT01000566
[OJKT] metagenome; surface
412
486
+
Thr
GGT
[ENA]
¢þ
>WENV182629589
OJKT01001301
[OJKT] metagenome; surface
429
502
+
Trp
CCA
[ENA]
¢þ
>WENV182629631
OJKT01006034
[OJKT] metagenome; surface
431
505
+
His
GTG
[ENA]
¢þ
>WENV182629592
OJKT01001680
[OJKT] metagenome; surface
432
507
+
Lys
CTT
[ENA]
¢þ
>WENV182629632
OJKT01006267
[OJKT] metagenome; surface
458
375
-
Tyr
GTA
[ENA]
¢þ
>WENV182629570
OJKT01000392
[OJKT] metagenome; surface
460
386
-
Asp
GTC
[ENA]
¢þ
>WENV182629636
OJKT01007376
[OJKT] metagenome; surface
462
536
+
Met
CAT
[ENA]
¢þ
>WENV182629637
OJKT01007415
[OJKT] metagenome; surface
463
390
-
Asn
GTT
[ENA]
¢þ
>WENV182629630
OJKT01005999
[OJKT] metagenome; surface
467
542
+
Gly
CCC
[ENA]
¢þ
>WENV182629614
OJKT01004652
[OJKT] metagenome; surface
468
379
-
Ser
TGA
[ENA]
¢þ
>WENV182629607
OJKT01004208
[OJKT] metagenome; surface
470
397
-
Thr
TGT
[ENA]
¢þ
>WENV182629608
OJKT01004286
[OJKT] metagenome; surface
479
554
+
Thr
CGT
[ENA]
¢þ
>WENV182629606
OJKT01004121
[OJKT] metagenome; surface
483
407
-
Asp
GTC
[ENA]
¢þ
>WENV182629602
OJKT01003692
[OJKT] metagenome; surface
485
412
-
Gly
GCC
[ENA]
¢þ
>WENV182629568
OJKT01000328
[OJKT] metagenome; surface
498
424
-
Arg
CCG
[ENA]
¢þ
>WENV182629639
OJKT01007585
[OJKT] metagenome; surface
513
442
-
Gly
TCC
[ENA]
¢þ
>WENV182629622
OJKT01005558
[OJKT] metagenome; surface
522
440
-
Leu
CAG
[ENA]
¢þ
>WENV182629572
OJKT01000438
[OJKT] metagenome; surface
526
451
-
Leu
TAA
[ENA]
¢þ
>WENV182629597
OJKT01003005
[OJKT] metagenome; surface
529
443
-
Leu
GAG
[ENA]
¢þ
>WENV182629605
OJKT01004121
[OJKT] metagenome; surface
562
487
-
Val
TAC
[ENA]
¢þ
>WENV182629555
OJKT01000060
[OJKT] metagenome; surface
575
491
-
Leu
TAG
[ENA]
¢þ
>WENV182629613
OJKT01004652
[OJKT] metagenome; surface
582
507
-
Asp
GTC
[ENA]
¢þ
>WENV182629604
OJKT01004035
[OJKT] metagenome; surface
602
515
-
Ser
TGA
[ENA]
¢þ
>WENV182629627
OJKT01005733
[OJKT] metagenome; surface
613
538
-
Asn
GTT
[ENA]
¢þ
>WENV182629566
OJKT01000323
[OJKT] metagenome; surface
639
566
-
Lys
TTT
[ENA]
¢þ
>WENV182629601
OJKT01003653
[OJKT] metagenome; surface
650
723
+
Asn
GTT
[ENA]
¢þ
>WENV182629612
OJKT01004652
[OJKT] metagenome; surface
662
588
-
Glu
TTC
[ENA]
¢þ
>WENV182629593
OJKT01002480
[OJKT] metagenome; surface
662
736
+
Pro
TGG
[ENA]
¢þ
>WENV182629581
OJKT01000671
[OJKT] metagenome; surface
664
576
-
Ser
GCT
[ENA]
¢þ
>WENV182629619
OJKT01004671
[OJKT] metagenome; surface
674
600
-
Ala
GGC
[ENA]
¢þ
>WENV182629584
OJKT01001050
[OJKT] metagenome; surface
723
798
+
Glu
CTC
[ENA]
¢þ
>WENV182629583
OJKT01000714
[OJKT] metagenome; surface
756
683
-
Ala
TGC
[ENA]
¢þ
>WENV182629586
OJKT01001176
[OJKT] metagenome; surface
781
705
-
Gln
CTG
[ENA]
¢þ
>WENV182629582
OJKT01000714
[OJKT] metagenome; surface
842
766
-
Ile
GAT
[ENA]
¢þ
>WENV182629576
OJKT01000508
[OJKT] metagenome; surface
913
839
-
Leu
CAA
[ENA]
¢þ
>WENV182629585
OJKT01001176
[OJKT] metagenome; surface
968
892
-
Gln
TTG
[ENA]
¢þ
>WENV182629575
OJKT01000444
[OJKT] metagenome; surface
1369
1279
-
Leu
TAA
[ENA]
¢þ
>WENV182629574
OJKT01000444
[OJKT] metagenome; surface
1562
1489
-
Cys
GCA
[ENA]
¢þ
>WENV182629580
OJKT01000566
[OJKT] metagenome; surface
1821
1896
+
Trp
CCA
[ENA]
¢þ
>WENV182629565
OJKT01000305
[OJKT] metagenome; surface
1869
1794
-
Ala
TGC
[ENA]
¢þ
>WENV182629564
OJKT01000305
[OJKT] metagenome; surface
1957
1883
-
Pro
TGG
[ENA]
¢þ
>WENV182629573
OJKT01000444
[OJKT] metagenome; surface
2032
1957
-
Gly
GCC
[ENA]
¢þ
>WENV182629563
OJKT01000305
[OJKT] metagenome; surface
2051
1978
-
Arg
ACG
[ENA]
¢þ
>WENV182629569
OJKT01000342
[OJKT] metagenome; surface
2168
2241
+
Gly
CCC
[ENA]
¢þ
>WENV182629562
OJKT01000305
[OJKT] metagenome; surface
2169
2082
-
Leu
TAA
[ENA]
¢þ
>WENV182629558
OJKT01000201
[OJKT] metagenome; surface
2192
2268
+
Ile
GAT
[ENA]
¢þ
>WENV182629560
OJKT01000274
[OJKT] metagenome; surface
2217
2290
+
Arg
ACG
[ENA]
¢þ
>WENV182629561
OJKT01000305
[OJKT] metagenome; surface
2254
2180
-
Gly
GCC
[ENA]
¢þ
>WENV182629559
OJKT01000201
[OJKT] metagenome; surface
2274
2349
+
Ala
TGC
[ENA]
¢þ
>WENV182629551
OJKT01000002
[OJKT] metagenome; surface
2513
2440
-
Asp
GTC
[ENA]
¢þ
>WENV182629557
OJKT01000108
[OJKT] metagenome; surface
2671
2584
-
Leu
GAG
[ENA]
¢þ
>WENV182629554
OJKT01000060
[OJKT] metagenome; surface
2890
2820
-
Met
CAT
[ENA]
¢þ
>WENV182629553
OJKT01000045
[OJKT] metagenome; surface
4132
4057
-
Thr
CGT
[ENA]
¢þ
>WENV182629550
OJKT01000002
[OJKT] metagenome; surface
5030
4960
-
Val
TAC
[ENA]
¢þ
>WENV182629549
OJKT01000002
[OJKT] metagenome; surface
7509
7425
-
Ser
TGA
[ENA]
¢þ
>WENV182629548
OJKT01000002
[OJKT] metagenome; surface
7636
7554
-
Tyr
GTA
[ENA]
¢þ
>WENV182629547
OJKT01000002
[OJKT] metagenome; surface
7802
7728
-
Ala
TGC
[ENA]
¢þ
>WENV182629544
OJKT01000002
[OJKT] metagenome; surface
10162
10237
+
Lys
TTT
[ENA]
¢þ
>WENV182629546
OJKT01000002
[OJKT] metagenome; surface
10683
10610
-
Thr
TGT
[ENA]
¢þ
>WENV182629552
OJKT01000003
[OJKT] metagenome; surface
13550
13627
+
Leu
TAA
[ENA]
¢þ
>WENV182629545
OJKT01000002
[OJKT] metagenome; surface
13585
13511
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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