This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJKV] metagenome; surface
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182629917
OJKV01002722
[OJKV] metagenome; surface
20
96
+
Pro
CGG
[ENA]
¢þ
>WENV182629809
OJKV01000014
[OJKV] metagenome; surface
40
113
+
Thr
TGT
[ENA]
¢þ
>WENV182629943
OJKV01082684
[OJKV] metagenome; surface
73
149
+
fMet
CAT
[ENA]
¢þ
>WENV182629928
OJKV01011246
[OJKV] metagenome; surface
84
12
-
Met
CAT
[ENA]
¢þ
>WENV182629929
OJKV01012182
[OJKV] metagenome; surface
89
18
-
Glu
CTC
[ENA]
¢þ
>WENV182629934
OJKV01038634
[OJKV] metagenome; surface
124
195
+
Asp
GTC
[ENA]
¢þ
>WENV182629907
OJKV01001481
[OJKV] metagenome; surface
161
235
+
Asn
GTT
[ENA]
¢þ
>WENV182629895
OJKV01000667
[OJKV] metagenome; surface
196
123
-
Lys
CTT
[ENA]
¢þ
>WENV182629893
OJKV01000656
[OJKV] metagenome; surface
218
130
-
Ser
GGA
[ENA]
¢þ
>WENV182629874
OJKV01000312
[OJKV] metagenome; surface
232
316
+
Leu
CAG
[ENA]
¢þ
>WENV182629911
OJKV01001628
[OJKV] metagenome; surface
241
171
-
Gly
CCC
[ENA]
¢þ
>WENV182629941
OJKV01075000
[OJKV] metagenome; surface
242
148
-
SeC
TCA
[ENA]
¢þ
>WENV182629940
OJKV01062390
[OJKV] metagenome; surface
242
325
+
Ser
AGA
[ENA]
¢þ
>WENV182629912
OJKV01001923
[OJKV] metagenome; surface
249
176
-
Arg
CCT
[ENA]
¢þ
>WENV182629909
OJKV01001505
[OJKV] metagenome; surface
257
184
-
Asn
GTT
[ENA]
¢þ
>WENV182629927
OJKV01007996
[OJKV] metagenome; surface
257
330
+
Val
CAC
[ENA]
¢þ
>WENV182629939
OJKV01060347
[OJKV] metagenome; surface
266
191
-
Thr
CGT
[ENA]
¢þ
>WENV182629877
OJKV01000351
[OJKV] metagenome; surface
268
195
-
Asn
GTT
[ENA]
¢þ
>WENV182629915
OJKV01002691
[OJKV] metagenome; surface
294
211
-
Leu
TAG
[ENA]
¢þ
>WENV182629931
OJKV01027379
[OJKV] metagenome; surface
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV182629886
OJKV01000500
[OJKV] metagenome; surface
320
393
+
Gly
CCC
[ENA]
¢þ
>WENV182629890
OJKV01000631
[OJKV] metagenome; surface
323
397
+
Arg
CCG
[ENA]
¢þ
>WENV182629942
OJKV01081748
[OJKV] metagenome; surface
342
418
+
Gln
TTG
[ENA]
¢þ
>WENV182629891
OJKV01000653
[OJKV] metagenome; surface
351
278
-
Val
TAC
[ENA]
¢þ
>WENV182629938
OJKV01056410
[OJKV] metagenome; surface
351
422
+
Pro
AGG
[ENA]
¢þ
>WENV182629937
OJKV01049723
[OJKV] metagenome; surface
361
286
-
Ala
GGC
[ENA]
¢þ
>WENV182629906
OJKV01001403
[OJKV] metagenome; surface
448
376
-
Met
CAT
[ENA]
¢þ
>WENV182629916
OJKV01002702
[OJKV] metagenome; surface
459
376
-
Leu
CAG
[ENA]
¢þ
>WENV182629932
OJKV01029984
[OJKV] metagenome; surface
477
562
+
Tyr
GTA
[ENA]
¢þ
>WENV182629936
OJKV01044139
[OJKV] metagenome; surface
494
409
-
Ser
GGA
[ENA]
¢þ
>WENV182629864
OJKV01000202
[OJKV] metagenome; surface
496
583
+
Leu
CAG
[ENA]
¢þ
>WENV182629935
OJKV01041883
[OJKV] metagenome; surface
500
429
-
Gln
TTG
[ENA]
¢þ
>WENV182629872
OJKV01000297
[OJKV] metagenome; surface
510
584
+
Asp
GTC
[ENA]
¢þ
>WENV182629857
OJKV01000153
[OJKV] metagenome; surface
573
500
-
Lys
TTT
[ENA]
¢þ
>WENV182629933
OJKV01029984
[OJKV] metagenome; surface
586
656
+
Gly
TCC
[ENA]
¢þ
>WENV182629873
OJKV01000297
[OJKV] metagenome; surface
603
676
+
Phe
GAA
[ENA]
¢þ
>WENV182629925
OJKV01004486
[OJKV] metagenome; surface
613
541
-
Val
CAC
[ENA]
¢þ
>WENV182629850
OJKV01000097
[OJKV] metagenome; surface
626
538
-
Ser
TGA
[ENA]
¢þ
>WENV182629930
OJKV01017124
[OJKV] metagenome; surface
649
574
-
Thr
AGT
[ENA]
¢þ
>WENV182629884
OJKV01000453
[OJKV] metagenome; surface
693
765
+
Gln
CTG
[ENA]
¢þ
>WENV182629889
OJKV01000561
[OJKV] metagenome; surface
723
798
+
Pro
TGG
[ENA]
¢þ
>WENV182629854
OJKV01000099
[OJKV] metagenome; surface
736
810
+
Ile2
CAT
[ENA]
¢þ
>WENV182629885
OJKV01000453
[OJKV] metagenome; surface
871
946
+
Glu
CTC
[ENA]
¢þ
>WENV182629908
OJKV01001503
[OJKV] metagenome; surface
875
959
+
Leu
CAA
[ENA]
¢þ
>WENV182629926
OJKV01006123
[OJKV] metagenome; surface
904
832
-
Arg
CCG
[ENA]
¢þ
>WENV182629923
OJKV01004486
[OJKV] metagenome; surface
1004
1079
+
Gly
GCC
[ENA]
¢þ
>WENV182629922
OJKV01003207
[OJKV] metagenome; surface
1024
1111
+
Ser
CGA
[ENA]
¢þ
>WENV182629918
OJKV01002796
[OJKV] metagenome; surface
1037
1111
+
Pro
GGG
[ENA]
¢þ
>WENV182629910
OJKV01001519
[OJKV] metagenome; surface
1040
1125
+
Ser
TGA
[ENA]
¢þ
>WENV182629901
OJKV01000877
[OJKV] metagenome; surface
1087
1174
+
Leu
GAG
[ENA]
¢þ
>WENV182629924
OJKV01004486
[OJKV] metagenome; surface
1096
1167
+
Cys
GCA
[ENA]
¢þ
>WENV182629902
OJKV01001091
[OJKV] metagenome; surface
1099
1028
-
Glu
TTC
[ENA]
¢þ
>WENV182629871
OJKV01000271
[OJKV] metagenome; surface
1136
1209
+
Asn
GTT
[ENA]
¢þ
>WENV182629859
OJKV01000164
[OJKV] metagenome; surface
1167
1092
-
Leu
TAA
[ENA]
¢þ
>WENV182629896
OJKV01000672
[OJKV] metagenome; surface
1192
1119
-
Gly
TCC
[ENA]
¢þ
>WENV182629914
OJKV01002123
[OJKV] metagenome; surface
1205
1278
+
Trp
CCA
[ENA]
¢þ
>WENV182629921
OJKV01003132
[OJKV] metagenome; surface
1246
1322
+
Asp
GTC
[ENA]
¢þ
>WENV182629920
OJKV01003097
[OJKV] metagenome; surface
1266
1338
+
Gln
CTG
[ENA]
¢þ
>WENV182629887
OJKV01000520
[OJKV] metagenome; surface
1303
1378
+
Glu
TTC
[ENA]
¢þ
>WENV182629878
OJKV01000365
[OJKV] metagenome; surface
1311
1235
-
Pro
CGG
[ENA]
¢þ
>WENV182629898
OJKV01000740
[OJKV] metagenome; surface
1329
1402
+
Ala
CGC
[ENA]
¢þ
>WENV182629883
OJKV01000440
[OJKV] metagenome; surface
1336
1262
-
Lys
TTT
[ENA]
¢þ
>WENV182629919
OJKV01003009
[OJKV] metagenome; surface
1346
1271
-
Thr
GGT
[ENA]
¢þ
>WENV182629913
OJKV01001974
[OJKV] metagenome; surface
1424
1498
+
Leu
TAA
[ENA]
¢þ
>WENV182629867
OJKV01000211
[OJKV] metagenome; surface
1445
1355
-
Ser
GGA
[ENA]
¢þ
>WENV182629899
OJKV01000789
[OJKV] metagenome; surface
1571
1482
-
Leu
GAG
[ENA]
¢þ
>WENV182629904
OJKV01001218
[OJKV] metagenome; surface
1592
1517
-
Glu
CTC
[ENA]
¢þ
>WENV182629858
OJKV01000156
[OJKV] metagenome; surface
1656
1572
-
Leu
CAG
[ENA]
¢þ
>WENV182629905
OJKV01001383
[OJKV] metagenome; surface
1699
1625
-
Ile
AAT
[ENA]
¢þ
>WENV182629903
OJKV01001182
[OJKV] metagenome; surface
1805
1731
-
Ile2
CAT
[ENA]
¢þ
>WENV182629870
OJKV01000218
[OJKV] metagenome; surface
1830
1756
-
Met
CAT
[ENA]
¢þ
>WENV182629875
OJKV01000312
[OJKV] metagenome; surface
1958
2031
+
Gly
GCC
[ENA]
¢þ
>WENV182629869
OJKV01000218
[OJKV] metagenome; surface
1968
1895
-
Thr
GGT
[ENA]
¢þ
>WENV182629868
OJKV01000218
[OJKV] metagenome; surface
2251
2169
-
Tyr
GTA
[ENA]
¢þ
>WENV182629900
OJKV01000833
[OJKV] metagenome; surface
2364
2291
-
Ala
CGC
[ENA]
¢þ
>WENV182629816
OJKV01000021
[OJKV] metagenome; surface
2659
2584
-
Arg
TCT
[ENA]
¢þ
>WENV182629894
OJKV01000667
[OJKV] metagenome; surface
2728
2653
-
His
GTG
[ENA]
¢þ
>WENV182629897
OJKV01000735
[OJKV] metagenome; surface
2882
2807
-
Arg
TCT
[ENA]
¢þ
>WENV182629880
OJKV01000440
[OJKV] metagenome; surface
3149
3223
+
Glu
TTC
[ENA]
¢þ
>WENV182629856
OJKV01000110
[OJKV] metagenome; surface
3251
3339
+
Ser
GCT
[ENA]
¢þ
>WENV182629892
OJKV01000654
[OJKV] metagenome; surface
3373
3298
-
Thr
TGT
[ENA]
¢þ
>WENV182629881
OJKV01000440
[OJKV] metagenome; surface
3636
3710
+
Asp
GTC
[ENA]
¢þ
>WENV182629888
OJKV01000549
[OJKV] metagenome; surface
3753
3679
-
Ile
GAT
[ENA]
¢þ
>WENV182629882
OJKV01000440
[OJKV] metagenome; surface
3771
3846
+
Phe
GAA
[ENA]
¢þ
>WENV182629863
OJKV01000192
[OJKV] metagenome; surface
3996
3923
-
Arg
CCT
[ENA]
¢þ
>WENV182629827
OJKV01000036
[OJKV] metagenome; surface
4272
4197
-
Thr
CGT
[ENA]
¢þ
>WENV182629860
OJKV01000173
[OJKV] metagenome; surface
4316
4230
-
Leu
GAG
[ENA]
¢þ
>WENV182629861
OJKV01000177
[OJKV] metagenome; surface
4378
4451
+
Arg
CCT
[ENA]
¢þ
>WENV182629879
OJKV01000408
[OJKV] metagenome; surface
4635
4709
+
fMet
CAT
[ENA]
¢þ
>WENV182629837
OJKV01000046
[OJKV] metagenome; surface
4889
4816
-
Ala
GGC
[ENA]
¢þ
>WENV182629876
OJKV01000314
[OJKV] metagenome; surface
5010
4938
-
Cys
GCA
[ENA]
¢þ
>WENV182629862
OJKV01000181
[OJKV] metagenome; surface
5480
5567
+
Ser
TGA
[ENA]
¢þ
>WENV182629847
OJKV01000087
[OJKV] metagenome; surface
5514
5441
-
Ala
GGC
[ENA]
¢þ
>WENV182629865
OJKV01000203
[OJKV] metagenome; surface
5545
5473
-
Gln
TTG
[ENA]
¢þ
>WENV182629866
OJKV01000211
[OJKV] metagenome; surface
5614
5525
-
Ser
CGA
[ENA]
¢þ
>WENV182629853
OJKV01000098
[OJKV] metagenome; surface
5946
5873
-
Lys
TTT
[ENA]
¢þ
>WENV182629829
OJKV01000039
[OJKV] metagenome; surface
6050
6132
+
Tyr
GTA
[ENA]
¢þ
>WENV182629812
OJKV01000020
[OJKV] metagenome; surface
6081
6154
+
Arg
TCT
[ENA]
¢þ
>WENV182629851
OJKV01000098
[OJKV] metagenome; surface
6099
6174
+
Glu
TTC
[ENA]
¢þ
>WENV182629825
OJKV01000033
[OJKV] metagenome; surface
6131
6058
-
Gly
CCC
[ENA]
¢þ
>WENV182629838
OJKV01000057
[OJKV] metagenome; surface
6144
6069
-
Arg
CCG
[ENA]
¢þ
>WENV182629852
OJKV01000098
[OJKV] metagenome; surface
6176
6251
+
Asp
GTC
[ENA]
¢þ
>WENV182629855
OJKV01000103
[OJKV] metagenome; surface
6254
6328
+
Pro
GGG
[ENA]
¢þ
>WENV182629820
OJKV01000030
[OJKV] metagenome; surface
6451
6376
-
Thr
CGT
[ENA]
¢þ
>WENV182629839
OJKV01000061
[OJKV] metagenome; surface
6568
6652
+
Leu
TAG
[ENA]
¢þ
>WENV182629849
OJKV01000089
[OJKV] metagenome; surface
7195
7267
+
Gln
TTG
[ENA]
¢þ
>WENV182629843
OJKV01000073
[OJKV] metagenome; surface
8028
8104
+
Ile
GAT
[ENA]
¢þ
>WENV182629844
OJKV01000073
[OJKV] metagenome; surface
8131
8204
+
Ala
TGC
[ENA]
¢þ
>WENV182629824
OJKV01000031
[OJKV] metagenome; surface
8819
8744
-
Trp
CCA
[ENA]
¢þ
>WENV182629823
OJKV01000031
[OJKV] metagenome; surface
9366
9292
-
Met
CAT
[ENA]
¢þ
>WENV182629813
OJKV01000020
[OJKV] metagenome; surface
9380
9453
+
His
GTG
[ENA]
¢þ
>WENV182629822
OJKV01000031
[OJKV] metagenome; surface
9545
9472
-
Thr
GGT
[ENA]
¢þ
>WENV182629811
OJKV01000015
[OJKV] metagenome; surface
9768
9694
-
Gly
TCC
[ENA]
¢þ
>WENV182629821
OJKV01000031
[OJKV] metagenome; surface
9863
9781
-
Tyr
GTA
[ENA]
¢þ
>WENV182629836
OJKV01000045
[OJKV] metagenome; surface
10057
9981
-
Pro
TGG
[ENA]
¢þ
>WENV182629814
OJKV01000020
[OJKV] metagenome; surface
10110
10183
+
Lys
CTT
[ENA]
¢þ
>WENV182629835
OJKV01000045
[OJKV] metagenome; surface
10199
10271
+
Gly
TCC
[ENA]
¢þ
>WENV182629842
OJKV01000071
[OJKV] metagenome; surface
10272
10198
-
Val
GAC
[ENA]
¢þ
>WENV182629841
OJKV01000071
[OJKV] metagenome; surface
10394
10319
-
Gly
GCC
[ENA]
¢þ
>WENV182629840
OJKV01000071
[OJKV] metagenome; surface
10640
10714
+
Val
CAC
[ENA]
¢þ
>WENV182629810
OJKV01000015
[OJKV] metagenome; surface
10841
10915
+
Pro
TGG
[ENA]
¢þ
>WENV182629833
OJKV01000041
[OJKV] metagenome; surface
10993
10920
-
Gly
CCC
[ENA]
¢þ
>WENV182629848
OJKV01000088
[OJKV] metagenome; surface
11042
10968
-
Leu
CAA
[ENA]
¢þ
>WENV182629845
OJKV01000077
[OJKV] metagenome; surface
11289
11376
+
Ser
GCT
[ENA]
¢þ
>WENV182629846
OJKV01000077
[OJKV] metagenome; surface
11626
11699
+
Arg
ACG
[ENA]
¢þ
>WENV182629815
OJKV01000020
[OJKV] metagenome; surface
12747
12665
-
Leu
TAG
[ENA]
¢þ
>WENV182629830
OJKV01000039
[OJKV] metagenome; surface
12764
12839
+
Thr
GGT
[ENA]
¢þ
>WENV182629831
OJKV01000039
[OJKV] metagenome; surface
12877
12950
+
Met
CAT
[ENA]
¢þ
>WENV182629832
OJKV01000039
[OJKV] metagenome; surface
13088
13161
+
Trp
CCA
[ENA]
¢þ
>WENV182629826
OJKV01000034
[OJKV] metagenome; surface
13703
13629
-
Leu
TAA
[ENA]
¢þ
>WENV182629834
OJKV01000042
[OJKV] metagenome; surface
13958
14034
+
Pro
CGG
[ENA]
¢þ
>WENV182629828
OJKV01000037
[OJKV] metagenome; surface
15395
15318
-
Leu
TAA
[ENA]
¢þ
>WENV182629818
OJKV01000023
[OJKV] metagenome; surface
16131
16057
-
Val
TAC
[ENA]
¢þ
>WENV182629803
OJKV01000002
[OJKV] metagenome; surface
18560
18636
+
Ile
GAT
[ENA]
¢þ
>WENV182629804
OJKV01000002
[OJKV] metagenome; surface
18646
18719
+
Ala
TGC
[ENA]
¢þ
>WENV182629807
OJKV01000008
[OJKV] metagenome; surface
18913
18989
+
fMet
CAT
[ENA]
¢þ
>WENV182629806
OJKV01000007
[OJKV] metagenome; surface
19185
19259
+
Leu
CAA
[ENA]
¢þ
>WENV182629819
OJKV01000024
[OJKV] metagenome; surface
19189
19264
+
Thr
TGT
[ENA]
¢þ
>WENV182629817
OJKV01000023
[OJKV] metagenome; surface
19322
19396
+
Ile2
CAT
[ENA]
¢þ
>WENV182629805
OJKV01000002
[OJKV] metagenome; surface
21453
21526
+
Ala
TGC
[ENA]
¢þ
>WENV182629808
OJKV01000011
[OJKV] metagenome; surface
28158
28082
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK