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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJMB] metagenome; surface
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182646514
OJMB01001210
[OJMB] metagenome; surface
63
137
+
Ile
AAT
[ENA]
¢þ
>WENV182646504
OJMB01000089
[OJMB] metagenome; surface
84
155
+
Gly
TCC
[ENA]
¢þ
>WENV182646562
OJMB01140337
[OJMB] metagenome; surface
89
17
-
Arg
CCT
[ENA]
¢þ
>WENV182646565
OJMB01165850
[OJMB] metagenome; surface
120
202
+
Ser
GCT
[ENA]
¢þ
>WENV182646570
OJMB01233365
[OJMB] metagenome; surface
126
47
-
Gln
TTG
[ENA]
¢þ
>WENV182646544
OJMB01044451
[OJMB] metagenome; surface
136
209
+
Gln
CTG
[ENA]
¢þ
>WENV182646503
OJMB01000070
[OJMB] metagenome; surface
141
66
-
Ala
TGC
[ENA]
¢þ
>WENV182646516
OJMB01001511
[OJMB] metagenome; surface
143
217
+
Pro
TGG
[ENA]
¢þ
>WENV182646550
OJMB01064485
[OJMB] metagenome; surface
153
65
-
Ser
CGA
[ENA]
¢þ
>WENV182646548
OJMB01062507
[OJMB] metagenome; surface
199
126
-
Phe
GAA
[ENA]
¢þ
>WENV182646518
OJMB01001956
[OJMB] metagenome; surface
204
278
+
Ile
GAT
[ENA]
¢þ
>WENV182646524
OJMB01003169
[OJMB] metagenome; surface
221
137
-
Leu
CAA
[ENA]
¢þ
>WENV182646502
OJMB01000070
[OJMB] metagenome; surface
229
155
-
Pro
TGG
[ENA]
¢þ
>WENV182646557
OJMB01091494
[OJMB] metagenome; surface
230
303
+
Cys
GCA
[ENA]
¢þ
>WENV182646567
OJMB01167894
[OJMB] metagenome; surface
251
325
+
Val
TAC
[ENA]
¢þ
>WENV182646513
OJMB01001172
[OJMB] metagenome; surface
260
336
+
Pro
CGG
[ENA]
¢þ
>WENV182646554
OJMB01074719
[OJMB] metagenome; surface
265
191
-
Ile2
CAT
[ENA]
¢þ
>WENV182646545
OJMB01060499
[OJMB] metagenome; surface
274
357
+
Ser
AGA
[ENA]
¢þ
>WENV182646549
OJMB01063818
[OJMB] metagenome; surface
276
348
+
Phe
GAA
[ENA]
¢þ
>WENV182646517
OJMB01001938
[OJMB] metagenome; surface
286
214
-
Val
CAC
[ENA]
¢þ
>WENV182646547
OJMB01062507
[OJMB] metagenome; surface
292
218
-
Asp
GTC
[ENA]
¢þ
>WENV182646530
OJMB01005800
[OJMB] metagenome; surface
312
236
-
fMet
CAT
[ENA]
¢þ
>WENV182646566
OJMB01166474
[OJMB] metagenome; surface
326
253
-
Gly
CCC
[ENA]
¢þ
>WENV182646553
OJMB01073438
[OJMB] metagenome; surface
328
246
-
Leu
TAG
[ENA]
¢þ
>WENV182646555
OJMB01076152
[OJMB] metagenome; surface
329
401
+
Met
CAT
[ENA]
¢þ
>WENV182646501
OJMB01000070
[OJMB] metagenome; surface
332
256
-
Arg
ACG
[ENA]
¢þ
>WENV182646521
OJMB01002385
[OJMB] metagenome; surface
353
271
-
Tyr
GTA
[ENA]
¢þ
>WENV182646543
OJMB01041886
[OJMB] metagenome; surface
401
473
+
Lys
TTT
[ENA]
¢þ
>WENV182646542
OJMB01036706
[OJMB] metagenome; surface
421
350
-
Ala
TGC
[ENA]
¢þ
>WENV182646500
OJMB01000070
[OJMB] metagenome; surface
433
345
-
Leu
TAA
[ENA]
¢þ
>WENV182646559
OJMB01120477
[OJMB] metagenome; surface
438
519
+
Leu
AAG
[ENA]
¢þ
>WENV182646564
OJMB01164737
[OJMB] metagenome; surface
441
516
+
Thr
GGT
[ENA]
¢þ
>WENV182646505
OJMB01000089
[OJMB] metagenome; surface
442
513
+
Glu
CTC
[ENA]
¢þ
>WENV182646561
OJMB01131527
[OJMB] metagenome; surface
448
355
-
Ile
TAT
[ENA]
¢þ
>WENV182646569
OJMB01230743
[OJMB] metagenome; surface
448
377
-
Ala
AGC
[ENA]
¢þ
>WENV182646556
OJMB01090113
[OJMB] metagenome; surface
449
539
+
Ser
GCT
[ENA]
¢þ
>WENV182646558
OJMB01092624
[OJMB] metagenome; surface
464
389
-
Arg
TCT
[ENA]
¢þ
>WENV182646563
OJMB01141460
[OJMB] metagenome; surface
486
574
+
Ser
GGA
[ENA]
¢þ
>WENV182646568
OJMB01182491
[OJMB] metagenome; surface
494
420
-
Gly
TCC
[ENA]
¢þ
>WENV182646537
OJMB01015875
[OJMB] metagenome; surface
515
588
+
Gly
CCC
[ENA]
¢þ
>WENV182646499
OJMB01000070
[OJMB] metagenome; surface
519
445
-
Gly
GCC
[ENA]
¢þ
>WENV182646546
OJMB01061083
[OJMB] metagenome; surface
554
482
-
Arg
CCT
[ENA]
¢þ
>WENV182646560
OJMB01126526
[OJMB] metagenome; surface
574
503
-
Asp
GTC
[ENA]
¢þ
>WENV182646498
OJMB01000070
[OJMB] metagenome; surface
611
537
-
Lys
TTT
[ENA]
¢þ
>WENV182646520
OJMB01002156
[OJMB] metagenome; surface
643
569
-
Asn
GTT
[ENA]
¢þ
>WENV182646497
OJMB01000070
[OJMB] metagenome; surface
692
617
-
Thr
TGT
[ENA]
¢þ
>WENV182646551
OJMB01064778
[OJMB] metagenome; surface
711
637
-
Ile2
CAT
[ENA]
¢þ
>WENV182646533
OJMB01012031
[OJMB] metagenome; surface
723
652
-
Trp
CCA
[ENA]
¢þ
>WENV182646487
OJMB01000004
[OJMB] metagenome; surface
761
838
+
Leu
TAA
[ENA]
¢þ
>WENV182646496
OJMB01000070
[OJMB] metagenome; surface
774
700
-
Phe
GAA
[ENA]
¢þ
>WENV182646552
OJMB01066516
[OJMB] metagenome; surface
778
705
-
Glu
CTC
[ENA]
¢þ
>WENV182646532
OJMB01008729
[OJMB] metagenome; surface
779
707
-
Met
CAT
[ENA]
¢þ
>WENV182646541
OJMB01034085
[OJMB] metagenome; surface
784
711
-
Thr
TGT
[ENA]
¢þ
>WENV182646536
OJMB01014559
[OJMB] metagenome; surface
787
716
-
His
GTG
[ENA]
¢þ
>WENV182646540
OJMB01030191
[OJMB] metagenome; surface
817
745
-
Val
GAC
[ENA]
¢þ
>WENV182646526
OJMB01004110
[OJMB] metagenome; surface
824
898
+
Pro
GGG
[ENA]
¢þ
>WENV182646495
OJMB01000070
[OJMB] metagenome; surface
859
784
-
Asp
GTC
[ENA]
¢þ
>WENV182646535
OJMB01014528
[OJMB] metagenome; surface
865
936
+
Arg
CCG
[ENA]
¢þ
>WENV182646539
OJMB01030191
[OJMB] metagenome; surface
889
818
-
Cys
GCA
[ENA]
¢þ
>WENV182646538
OJMB01020375
[OJMB] metagenome; surface
934
860
-
Leu
CAA
[ENA]
¢þ
>WENV182646494
OJMB01000070
[OJMB] metagenome; surface
947
874
-
fMet
CAT
[ENA]
¢þ
>WENV182646489
OJMB01000007
[OJMB] metagenome; surface
995
905
-
Ser
GCT
[ENA]
¢þ
>WENV182646534
OJMB01014201
[OJMB] metagenome; surface
1037
964
-
Thr
TGT
[ENA]
¢þ
>WENV182646493
OJMB01000070
[OJMB] metagenome; surface
1051
959
-
Ser
TGA
[ENA]
¢þ
>WENV182646523
OJMB01002602
[OJMB] metagenome; surface
1051
978
-
Lys
TTT
[ENA]
¢þ
>WENV182646488
OJMB01000007
[OJMB] metagenome; surface
1072
998
-
Asn
GTT
[ENA]
¢þ
>WENV182646515
OJMB01001324
[OJMB] metagenome; surface
1220
1305
+
Ser
TGA
[ENA]
¢þ
>WENV182646529
OJMB01004952
[OJMB] metagenome; surface
1251
1178
-
Gly
GCC
[ENA]
¢þ
>WENV182646519
OJMB01002082
[OJMB] metagenome; surface
1286
1359
+
Ala
CGC
[ENA]
¢þ
>WENV182646531
OJMB01008630
[OJMB] metagenome; surface
1324
1249
-
Asn
GTT
[ENA]
¢þ
>WENV182646522
OJMB01002394
[OJMB] metagenome; surface
1341
1268
-
Arg
CCT
[ENA]
¢þ
>WENV182646512
OJMB01001156
[OJMB] metagenome; surface
1363
1289
-
Arg
TCT
[ENA]
¢þ
>WENV182646528
OJMB01004952
[OJMB] metagenome; surface
1367
1295
-
Val
GAC
[ENA]
¢þ
>WENV182646511
OJMB01000383
[OJMB] metagenome; surface
1397
1470
+
Val
TAC
[ENA]
¢þ
>WENV182646491
OJMB01000053
[OJMB] metagenome; surface
1442
1352
-
Ser
GGA
[ENA]
¢þ
>WENV182646509
OJMB01000261
[OJMB] metagenome; surface
1445
1371
-
Arg
CCT
[ENA]
¢þ
>WENV182646527
OJMB01004952
[OJMB] metagenome; surface
1465
1394
-
Cys
GCA
[ENA]
¢þ
>WENV182646525
OJMB01003314
[OJMB] metagenome; surface
1546
1471
-
Thr
CGT
[ENA]
¢þ
>WENV182646490
OJMB01000053
[OJMB] metagenome; surface
1566
1495
-
Glu
TTC
[ENA]
¢þ
>WENV182646510
OJMB01000366
[OJMB] metagenome; surface
1965
1894
-
Glu
TTC
[ENA]
¢þ
>WENV182646508
OJMB01000207
[OJMB] metagenome; surface
3988
4058
+
Gly
CCC
[ENA]
¢þ
>WENV182646507
OJMB01000089
[OJMB] metagenome; surface
4419
4346
-
Gly
GCC
[ENA]
¢þ
>WENV182646492
OJMB01000055
[OJMB] metagenome; surface
4689
4616
-
Ala
TGC
[ENA]
¢þ
>WENV182646506
OJMB01000089
[OJMB] metagenome; surface
6144
6062
-
Leu
CAG
[ENA]
¢þ
>WENV182646485
OJMB01000001
[OJMB] metagenome; surface
11631
11705
+
Arg
TCT
[ENA]
¢þ
>WENV182646486
OJMB01000001
[OJMB] metagenome; surface
11898
11969
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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