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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OJMS] gut metagenome; gut
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182664973
OJMS01000890
[OJMS] gut metagenome; gut
32
108
+
Leu
TAA
[ENA]
¢þ
>WENV182664974
OJMS01000909
[OJMS] gut metagenome; gut
104
30
-
Ile2
CAT
[ENA]
¢þ
>WENV182664976
OJMS01001867
[OJMS] gut metagenome; gut
343
267
-
Trp
CCA
[ENA]
¢þ
>WENV182664977
OJMS01002431
[OJMS] gut metagenome; gut
445
373
-
Glu
TTC
[ENA]
¢þ
>WENV182664975
OJMS01001066
[OJMS] gut metagenome; gut
845
918
+
Trp
CCA
[ENA]
¢þ
>WENV182664972
OJMS01000687
[OJMS] gut metagenome; gut
1174
1099
-
Trp
CCA
[ENA]
¢þ
>WENV182664971
OJMS01000473
[OJMS] gut metagenome; gut
1408
1332
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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