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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OJNE] gut metagenome; gut
HIT:
18 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182665054
OJNE01002979
[OJNE] gut metagenome; gut
6
77
+
Gly
GCC
[ENA]
¢þ
>WENV182665055
OJNE01002979
[OJNE] gut metagenome; gut
94
179
+
Leu
TAA
[ENA]
¢þ
>WENV182665044
OJNE01000661
[OJNE] gut metagenome; gut
102
176
+
Met
CAT
[ENA]
¢þ
>WENV182665056
OJNE01002979
[OJNE] gut metagenome; gut
190
265
+
Arg
ACG
[ENA]
¢þ
>WENV182665053
OJNE01002744
[OJNE] gut metagenome; gut
235
311
+
Trp
CCA
[ENA]
¢þ
>WENV182665057
OJNE01002979
[OJNE] gut metagenome; gut
274
347
+
Pro
TGG
[ENA]
¢þ
>WENV182665043
OJNE01000646
[OJNE] gut metagenome; gut
338
262
-
fMet
CAT
[ENA]
¢þ
>WENV182665058
OJNE01002979
[OJNE] gut metagenome; gut
362
434
+
Ala
TGC
[ENA]
¢þ
>WENV182665059
OJNE01002979
[OJNE] gut metagenome; gut
458
533
+
Met
CAT
[ENA]
¢þ
>WENV182665052
OJNE01002059
[OJNE] gut metagenome; gut
496
422
-
Thr
GGT
[ENA]
¢þ
>WENV182665051
OJNE01002059
[OJNE] gut metagenome; gut
669
745
+
Asn
GTT
[ENA]
¢þ
>WENV182665048
OJNE01000960
[OJNE] gut metagenome; gut
1060
1133
+
Glu
TTC
[ENA]
¢þ
>WENV182665049
OJNE01001095
[OJNE] gut metagenome; gut
1157
1229
+
Gln
TTG
[ENA]
¢þ
>WENV182665050
OJNE01001097
[OJNE] gut metagenome; gut
1225
1150
-
Trp
CCA
[ENA]
¢þ
>WENV182665046
OJNE01000845
[OJNE] gut metagenome; gut
1397
1482
+
Ser
TGA
[ENA]
¢þ
>WENV182665047
OJNE01000888
[OJNE] gut metagenome; gut
1404
1328
-
Met
CAT
[ENA]
¢þ
>WENV182665045
OJNE01000771
[OJNE] gut metagenome; gut
1474
1547
+
Arg
CCG
[ENA]
¢þ
>WENV182665042
OJNE01000399
[OJNE] gut metagenome; gut
1484
1557
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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