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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJSS] human gut metagenome; human gut
HIT:
91 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182796969
OJSS01001062
[OJSS] human gut metagenome; human gut
5
96
+
Ser
TGA
[ENA]
¢þ
>WENV182796982
OJSS01001498
[OJSS] human gut metagenome; human gut
68
143
+
Trp
CCA
[ENA]
¢þ
>WENV182796980
OJSS01001140
[OJSS] human gut metagenome; human gut
80
6
-
Glu
TTC
[ENA]
¢þ
>WENV182796945
OJSS01000339
[OJSS] human gut metagenome; human gut
86
161
+
Lys
CTT
[ENA]
¢þ
>WENV182796970
OJSS01001062
[OJSS] human gut metagenome; human gut
103
178
+
Asp
GTC
[ENA]
¢þ
>WENV182796897
OJSS01000024
[OJSS] human gut metagenome; human gut
110
25
-
Ser
GGA
[ENA]
¢þ
>WENV182796967
OJSS01000943
[OJSS] human gut metagenome; human gut
156
81
-
His
GTG
[ENA]
¢þ
>WENV182796964
OJSS01000777
[OJSS] human gut metagenome; human gut
158
82
-
fMet
CAT
[ENA]
¢þ
>WENV182796971
OJSS01001062
[OJSS] human gut metagenome; human gut
216
308
+
Ser
TGA
[ENA]
¢þ
>WENV182796966
OJSS01000943
[OJSS] human gut metagenome; human gut
263
187
-
Arg
CCG
[ENA]
¢þ
>WENV182796972
OJSS01001062
[OJSS] human gut metagenome; human gut
320
393
+
fMet
CAT
[ENA]
¢þ
>WENV182796898
OJSS01000042
[OJSS] human gut metagenome; human gut
347
264
-
Leu
CAG
[ENA]
¢þ
>WENV182796954
OJSS01000501
[OJSS] human gut metagenome; human gut
360
445
+
Leu
GAG
[ENA]
¢þ
>WENV182796973
OJSS01001062
[OJSS] human gut metagenome; human gut
497
571
+
Phe
GAA
[ENA]
¢þ
>WENV182796983
OJSS01001986
[OJSS] human gut metagenome; human gut
504
583
+
Gln
TTG
[ENA]
¢þ
>WENV182796965
OJSS01000925
[OJSS] human gut metagenome; human gut
536
610
+
Pro
GGG
[ENA]
¢þ
>WENV182796974
OJSS01001062
[OJSS] human gut metagenome; human gut
584
659
+
His
GTG
[ENA]
¢þ
>WENV182796975
OJSS01001062
[OJSS] human gut metagenome; human gut
677
750
+
Gly
TCC
[ENA]
¢þ
>WENV182796981
OJSS01001217
[OJSS] human gut metagenome; human gut
695
621
-
Lys
CTT
[ENA]
¢þ
>WENV182796976
OJSS01001062
[OJSS] human gut metagenome; human gut
760
834
+
Asn
GTT
[ENA]
¢þ
>WENV182796958
OJSS01000585
[OJSS] human gut metagenome; human gut
771
696
-
Ala
TGC
[ENA]
¢þ
>WENV182796959
OJSS01000611
[OJSS] human gut metagenome; human gut
814
741
-
Asn
GTT
[ENA]
¢þ
>WENV182796977
OJSS01001062
[OJSS] human gut metagenome; human gut
835
908
+
Glu
TTC
[ENA]
¢þ
>WENV182796978
OJSS01001062
[OJSS] human gut metagenome; human gut
959
1049
+
Ser
GGA
[ENA]
¢þ
>WENV182796979
OJSS01001128
[OJSS] human gut metagenome; human gut
1160
1235
+
Thr
TGT
[ENA]
¢þ
>WENV182796940
OJSS01000302
[OJSS] human gut metagenome; human gut
1254
1169
-
Ser
TGA
[ENA]
¢þ
>WENV182796922
OJSS01000221
[OJSS] human gut metagenome; human gut
1302
1378
+
Pro
CGG
[ENA]
¢þ
>WENV182796947
OJSS01000411
[OJSS] human gut metagenome; human gut
1371
1296
-
Arg
TCT
[ENA]
¢þ
>WENV182796936
OJSS01000257
[OJSS] human gut metagenome; human gut
1420
1494
+
Ile2
CAT
[ENA]
¢þ
>WENV182796968
OJSS01000982
[OJSS] human gut metagenome; human gut
1458
1533
+
Phe
GAA
[ENA]
¢þ
>WENV182796907
OJSS01000073
[OJSS] human gut metagenome; human gut
1786
1697
-
Ser
TGA
[ENA]
¢þ
>WENV182796963
OJSS01000720
[OJSS] human gut metagenome; human gut
1787
1714
-
Val
CAC
[ENA]
¢þ
>WENV182796913
OJSS01000142
[OJSS] human gut metagenome; human gut
1875
1949
+
Ile
GAT
[ENA]
¢þ
>WENV182796950
OJSS01000448
[OJSS] human gut metagenome; human gut
1917
1990
+
Arg
CCT
[ENA]
¢þ
>WENV182796941
OJSS01000306
[OJSS] human gut metagenome; human gut
1925
2001
+
Val
GAC
[ENA]
¢þ
>WENV182796919
OJSS01000220
[OJSS] human gut metagenome; human gut
2080
2169
+
Ser
GGA
[ENA]
¢þ
>WENV182796960
OJSS01000659
[OJSS] human gut metagenome; human gut
2109
2182
+
Ala
GGC
[ENA]
¢þ
>WENV182796962
OJSS01000720
[OJSS] human gut metagenome; human gut
2166
2239
+
Gly
GCC
[ENA]
¢þ
>WENV182796943
OJSS01000327
[OJSS] human gut metagenome; human gut
2221
2293
+
Gln
CTG
[ENA]
¢þ
>WENV182796955
OJSS01000514
[OJSS] human gut metagenome; human gut
2245
2319
+
Leu
TAA
[ENA]
¢þ
>WENV182796961
OJSS01000662
[OJSS] human gut metagenome; human gut
2345
2419
+
Val
TAC
[ENA]
¢þ
>WENV182796921
OJSS01000220
[OJSS] human gut metagenome; human gut
2406
2330
-
Arg
TCT
[ENA]
¢þ
>WENV182796944
OJSS01000327
[OJSS] human gut metagenome; human gut
2429
2504
+
Glu
CTC
[ENA]
¢þ
>WENV182796942
OJSS01000315
[OJSS] human gut metagenome; human gut
2450
2526
+
Ile2
CAT
[ENA]
¢þ
>WENV182796949
OJSS01000425
[OJSS] human gut metagenome; human gut
2500
2575
+
Thr
CGT
[ENA]
¢þ
>WENV182796920
OJSS01000220
[OJSS] human gut metagenome; human gut
2535
2459
-
Pro
TGG
[ENA]
¢þ
>WENV182796956
OJSS01000542
[OJSS] human gut metagenome; human gut
2659
2749
+
Ser
GCT
[ENA]
¢þ
>WENV182796953
OJSS01000494
[OJSS] human gut metagenome; human gut
2925
2850
-
Phe
GAA
[ENA]
¢þ
>WENV182796957
OJSS01000542
[OJSS] human gut metagenome; human gut
2979
3052
+
Arg
ACG
[ENA]
¢þ
>WENV182796952
OJSS01000494
[OJSS] human gut metagenome; human gut
3060
2986
-
Asp
GTC
[ENA]
¢þ
>WENV182796937
OJSS01000274
[OJSS] human gut metagenome; human gut
3249
3176
-
Gly
CCC
[ENA]
¢þ
>WENV182796939
OJSS01000294
[OJSS] human gut metagenome; human gut
3261
3344
+
Leu
TAG
[ENA]
¢þ
>WENV182796912
OJSS01000136
[OJSS] human gut metagenome; human gut
3432
3356
-
fMet
CAT
[ENA]
¢þ
>WENV182796946
OJSS01000411
[OJSS] human gut metagenome; human gut
3438
3513
+
His
GTG
[ENA]
¢þ
>WENV182796948
OJSS01000416
[OJSS] human gut metagenome; human gut
3446
3521
+
Pro
TGG
[ENA]
¢þ
>WENV182796938
OJSS01000288
[OJSS] human gut metagenome; human gut
3547
3463
-
Leu
CAA
[ENA]
¢þ
>WENV182796951
OJSS01000472
[OJSS] human gut metagenome; human gut
3550
3476
-
Lys
TTT
[ENA]
¢þ
>WENV182796923
OJSS01000243
[OJSS] human gut metagenome; human gut
3795
3871
+
Met
CAT
[ENA]
¢þ
>WENV182796926
OJSS01000245
[OJSS] human gut metagenome; human gut
3864
3939
+
Val
TAC
[ENA]
¢þ
>WENV182796924
OJSS01000243
[OJSS] human gut metagenome; human gut
3877
3961
+
Leu
TAG
[ENA]
¢þ
>WENV182796927
OJSS01000245
[OJSS] human gut metagenome; human gut
3946
4021
+
Thr
TGT
[ENA]
¢þ
>WENV182796925
OJSS01000243
[OJSS] human gut metagenome; human gut
3989
4063
+
Gln
TTG
[ENA]
¢þ
>WENV182796928
OJSS01000245
[OJSS] human gut metagenome; human gut
4026
4109
+
Tyr
GTA
[ENA]
¢þ
>WENV182796929
OJSS01000245
[OJSS] human gut metagenome; human gut
4114
4188
+
Gln
TTG
[ENA]
¢þ
>WENV182796930
OJSS01000245
[OJSS] human gut metagenome; human gut
4192
4264
+
Lys
TTT
[ENA]
¢þ
>WENV182796896
OJSS01000007
[OJSS] human gut metagenome; human gut
4219
4143
-
Asp
GTC
[ENA]
¢þ
>WENV182796931
OJSS01000245
[OJSS] human gut metagenome; human gut
4283
4357
+
Gly
GCC
[ENA]
¢þ
>WENV182796932
OJSS01000245
[OJSS] human gut metagenome; human gut
4369
4457
+
Leu
TAA
[ENA]
¢þ
>WENV182796933
OJSS01000245
[OJSS] human gut metagenome; human gut
4470
4544
+
Arg
ACG
[ENA]
¢þ
>WENV182796934
OJSS01000245
[OJSS] human gut metagenome; human gut
4553
4626
+
Pro
TGG
[ENA]
¢þ
>WENV182796935
OJSS01000245
[OJSS] human gut metagenome; human gut
4643
4718
+
Ala
TGC
[ENA]
¢þ
>WENV182796911
OJSS01000114
[OJSS] human gut metagenome; human gut
4804
4729
-
Gly
GCC
[ENA]
¢þ
>WENV182796914
OJSS01000172
[OJSS] human gut metagenome; human gut
5272
5345
+
Ala
CGC
[ENA]
¢þ
>WENV182796908
OJSS01000075
[OJSS] human gut metagenome; human gut
5759
5683
-
fMet
CAT
[ENA]
¢þ
>WENV182796915
OJSS01000215
[OJSS] human gut metagenome; human gut
5826
5901
+
Thr
TGT
[ENA]
¢þ
>WENV182796916
OJSS01000215
[OJSS] human gut metagenome; human gut
5932
6016
+
Tyr
GTA
[ENA]
¢þ
>WENV182796917
OJSS01000215
[OJSS] human gut metagenome; human gut
6058
6132
+
Gly
TCC
[ENA]
¢þ
>WENV182796918
OJSS01000215
[OJSS] human gut metagenome; human gut
6136
6211
+
Thr
GGT
[ENA]
¢þ
>WENV182796902
OJSS01000065
[OJSS] human gut metagenome; human gut
6175
6257
+
Tyr
GTA
[ENA]
¢þ
>WENV182796906
OJSS01000070
[OJSS] human gut metagenome; human gut
6449
6536
+
Ser
CGA
[ENA]
¢þ
>WENV182796903
OJSS01000065
[OJSS] human gut metagenome; human gut
6458
6531
+
Thr
GGT
[ENA]
¢þ
>WENV182796904
OJSS01000065
[OJSS] human gut metagenome; human gut
6596
6670
+
Met
CAT
[ENA]
¢þ
>WENV182796909
OJSS01000096
[OJSS] human gut metagenome; human gut
7344
7420
+
Ile
GAT
[ENA]
¢þ
>WENV182796901
OJSS01000062
[OJSS] human gut metagenome; human gut
7426
7351
-
Asn
GTT
[ENA]
¢þ
>WENV182796910
OJSS01000096
[OJSS] human gut metagenome; human gut
7474
7549
+
Ala
TGC
[ENA]
¢þ
>WENV182796900
OJSS01000047
[OJSS] human gut metagenome; human gut
7511
7436
-
Ala
GGC
[ENA]
¢þ
>WENV182796899
OJSS01000047
[OJSS] human gut metagenome; human gut
9207
9282
+
Val
TAC
[ENA]
¢þ
>WENV182796905
OJSS01000065
[OJSS] human gut metagenome; human gut
10662
10735
+
Trp
CCA
[ENA]
¢þ
>WENV182796895
OJSS01000007
[OJSS] human gut metagenome; human gut
15101
15026
-
Lys
TTT
[ENA]
¢þ
>WENV182796893
OJSS01000002
[OJSS] human gut metagenome; human gut
21862
21955
+
Ser
GCT
[ENA]
¢þ
>WENV182796894
OJSS01000002
[OJSS] human gut metagenome; human gut
21980
22056
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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