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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJSY] human gut metagenome; human gut
HIT:
102 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182797439
OJSY01000025
[OJSY] human gut metagenome; human gut
100
175
+
Trp
CCA
[ENA]
¢þ
>WENV182797514
OJSY01001216
[OJSY] human gut metagenome; human gut
116
192
+
Ile
GAT
[ENA]
¢þ
>WENV182797506
OJSY01000404
[OJSY] human gut metagenome; human gut
128
200
+
Ala
TGC
[ENA]
¢þ
>WENV182797475
OJSY01000245
[OJSY] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182797513
OJSY01000473
[OJSY] human gut metagenome; human gut
174
101
-
Gln
TTG
[ENA]
¢þ
>WENV182797515
OJSY01001216
[OJSY] human gut metagenome; human gut
229
304
+
Ala
TGC
[ENA]
¢þ
>WENV182797512
OJSY01000473
[OJSY] human gut metagenome; human gut
260
187
-
His
GTG
[ENA]
¢þ
>WENV182797466
OJSY01000137
[OJSY] human gut metagenome; human gut
317
241
-
Pro
CGG
[ENA]
¢þ
>WENV182797511
OJSY01000473
[OJSY] human gut metagenome; human gut
370
297
-
Trp
CCA
[ENA]
¢þ
>WENV182797476
OJSY01000248
[OJSY] human gut metagenome; human gut
378
303
-
Phe
GAA
[ENA]
¢þ
>WENV182797510
OJSY01000473
[OJSY] human gut metagenome; human gut
456
374
-
Tyr
GTA
[ENA]
¢þ
>WENV182797509
OJSY01000473
[OJSY] human gut metagenome; human gut
533
461
-
Phe
GAA
[ENA]
¢þ
>WENV182797505
OJSY01000329
[OJSY] human gut metagenome; human gut
561
486
-
Thr
GGT
[ENA]
¢þ
>WENV182797504
OJSY01000329
[OJSY] human gut metagenome; human gut
641
567
-
Gly
TCC
[ENA]
¢þ
>WENV182797508
OJSY01000473
[OJSY] human gut metagenome; human gut
654
579
-
Asp
GTC
[ENA]
¢þ
>WENV182797507
OJSY01000473
[OJSY] human gut metagenome; human gut
738
664
-
Val
TAC
[ENA]
¢þ
>WENV182797503
OJSY01000329
[OJSY] human gut metagenome; human gut
841
757
-
Tyr
GTA
[ENA]
¢þ
>WENV182797502
OJSY01000329
[OJSY] human gut metagenome; human gut
927
852
-
Thr
TGT
[ENA]
¢þ
>WENV182797465
OJSY01000135
[OJSY] human gut metagenome; human gut
936
860
-
Arg
TCT
[ENA]
¢þ
>WENV182797479
OJSY01000267
[OJSY] human gut metagenome; human gut
2219
2144
-
Asn
GTT
[ENA]
¢þ
>WENV182797461
OJSY01000096
[OJSY] human gut metagenome; human gut
2333
2258
-
Phe
GAA
[ENA]
¢þ
>WENV182797456
OJSY01000077
[OJSY] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182797446
OJSY01000039
[OJSY] human gut metagenome; human gut
2843
2759
-
Leu
CAA
[ENA]
¢þ
>WENV182797480
OJSY01000285
[OJSY] human gut metagenome; human gut
3521
3607
+
Leu
TAA
[ENA]
¢þ
>WENV182797455
OJSY01000073
[OJSY] human gut metagenome; human gut
3524
3448
-
Pro
TGG
[ENA]
¢þ
>WENV182797481
OJSY01000285
[OJSY] human gut metagenome; human gut
3622
3697
+
fMet
CAT
[ENA]
¢þ
>WENV182797454
OJSY01000073
[OJSY] human gut metagenome; human gut
3653
3567
-
Leu
CAG
[ENA]
¢þ
>WENV182797482
OJSY01000285
[OJSY] human gut metagenome; human gut
3705
3779
+
Glu
TTC
[ENA]
¢þ
>WENV182797453
OJSY01000073
[OJSY] human gut metagenome; human gut
3749
3674
-
His
GTG
[ENA]
¢þ
>WENV182797483
OJSY01000285
[OJSY] human gut metagenome; human gut
3789
3862
+
Gly
TCC
[ENA]
¢þ
>WENV182797484
OJSY01000285
[OJSY] human gut metagenome; human gut
3868
3943
+
Val
TAC
[ENA]
¢þ
>WENV182797452
OJSY01000073
[OJSY] human gut metagenome; human gut
3881
3805
-
Arg
CCG
[ENA]
¢þ
>WENV182797485
OJSY01000285
[OJSY] human gut metagenome; human gut
3949
4025
+
Asp
GTC
[ENA]
¢þ
>WENV182797477
OJSY01000267
[OJSY] human gut metagenome; human gut
3968
4043
+
Asn
GTT
[ENA]
¢þ
>WENV182797486
OJSY01000285
[OJSY] human gut metagenome; human gut
4035
4109
+
Thr
TGT
[ENA]
¢þ
>WENV182797448
OJSY01000051
[OJSY] human gut metagenome; human gut
4082
3996
-
Leu
GAG
[ENA]
¢þ
>WENV182797487
OJSY01000285
[OJSY] human gut metagenome; human gut
4124
4208
+
Tyr
GTA
[ENA]
¢þ
>WENV182797488
OJSY01000285
[OJSY] human gut metagenome; human gut
4218
4301
+
Leu
TAG
[ENA]
¢þ
>WENV182797489
OJSY01000285
[OJSY] human gut metagenome; human gut
4331
4407
+
Arg
TCT
[ENA]
¢þ
>WENV182797490
OJSY01000285
[OJSY] human gut metagenome; human gut
4417
4492
+
Gln
TTG
[ENA]
¢þ
>WENV182797491
OJSY01000285
[OJSY] human gut metagenome; human gut
4504
4579
+
Lys
TTT
[ENA]
¢þ
>WENV182797492
OJSY01000285
[OJSY] human gut metagenome; human gut
4582
4670
+
Ser
TGA
[ENA]
¢þ
>WENV182797493
OJSY01000285
[OJSY] human gut metagenome; human gut
4674
4749
+
Phe
GAA
[ENA]
¢þ
>WENV182797470
OJSY01000230
[OJSY] human gut metagenome; human gut
4724
4799
+
Gly
GCC
[ENA]
¢þ
>WENV182797494
OJSY01000285
[OJSY] human gut metagenome; human gut
4756
4830
+
Met
CAT
[ENA]
¢þ
>WENV182797495
OJSY01000285
[OJSY] human gut metagenome; human gut
4844
4920
+
Ile2
CAT
[ENA]
¢þ
>WENV182797471
OJSY01000230
[OJSY] human gut metagenome; human gut
4853
4926
+
Cys
GCA
[ENA]
¢þ
>WENV182797496
OJSY01000285
[OJSY] human gut metagenome; human gut
4938
5014
+
His
GTG
[ENA]
¢þ
>WENV182797472
OJSY01000230
[OJSY] human gut metagenome; human gut
4940
5026
+
Leu
TAA
[ENA]
¢þ
>WENV182797497
OJSY01000285
[OJSY] human gut metagenome; human gut
5023
5098
+
Lys
TTT
[ENA]
¢þ
>WENV182797498
OJSY01000285
[OJSY] human gut metagenome; human gut
5101
5189
+
Ser
TGA
[ENA]
¢þ
>WENV182797499
OJSY01000285
[OJSY] human gut metagenome; human gut
5193
5268
+
Phe
GAA
[ENA]
¢þ
>WENV182797500
OJSY01000285
[OJSY] human gut metagenome; human gut
5275
5349
+
Met
CAT
[ENA]
¢þ
>WENV182797501
OJSY01000285
[OJSY] human gut metagenome; human gut
5363
5439
+
Ile2
CAT
[ENA]
¢þ
>WENV182797474
OJSY01000243
[OJSY] human gut metagenome; human gut
5421
5507
+
Leu
GAG
[ENA]
¢þ
>WENV182797450
OJSY01000072
[OJSY] human gut metagenome; human gut
5674
5599
-
Phe
GAA
[ENA]
¢þ
>WENV182797478
OJSY01000267
[OJSY] human gut metagenome; human gut
6377
6452
+
Asn
GTT
[ENA]
¢þ
>WENV182797460
OJSY01000088
[OJSY] human gut metagenome; human gut
8136
8060
-
Val
GAC
[ENA]
¢þ
>WENV182797473
OJSY01000233
[OJSY] human gut metagenome; human gut
8194
8270
+
Asp
GTC
[ENA]
¢þ
>WENV182797459
OJSY01000088
[OJSY] human gut metagenome; human gut
8217
8141
-
Val
GAC
[ENA]
¢þ
>WENV182797468
OJSY01000156
[OJSY] human gut metagenome; human gut
8687
8761
+
Arg
CCT
[ENA]
¢þ
>WENV182797435
OJSY01000015
[OJSY] human gut metagenome; human gut
9180
9105
-
Ile2
CAT
[ENA]
¢þ
>WENV182797422
OJSY01000002
[OJSY] human gut metagenome; human gut
9427
9503
+
Asp
GTC
[ENA]
¢þ
>WENV182797429
OJSY01000006
[OJSY] human gut metagenome; human gut
10714
10787
+
Gly
CCC
[ENA]
¢þ
>WENV182797469
OJSY01000188
[OJSY] human gut metagenome; human gut
13084
13160
+
Arg
TCT
[ENA]
¢þ
>WENV182797467
OJSY01000153
[OJSY] human gut metagenome; human gut
13703
13616
-
Ser
GGA
[ENA]
¢þ
>WENV182797445
OJSY01000036
[OJSY] human gut metagenome; human gut
17745
17821
+
Pro
CGG
[ENA]
¢þ
>WENV182797463
OJSY01000117
[OJSY] human gut metagenome; human gut
20907
21001
+
SeC
TCA
[ENA]
¢þ
>WENV182797464
OJSY01000130
[OJSY] human gut metagenome; human gut
21863
21938
+
Thr
CGT
[ENA]
¢þ
>WENV182797436
OJSY01000017
[OJSY] human gut metagenome; human gut
24955
24880
-
Thr
TGT
[ENA]
¢þ
>WENV182797437
OJSY01000020
[OJSY] human gut metagenome; human gut
26953
26866
-
Ser
TGA
[ENA]
¢þ
>WENV182797462
OJSY01000106
[OJSY] human gut metagenome; human gut
28057
27983
-
Gln
CTG
[ENA]
¢þ
>WENV182797458
OJSY01000085
[OJSY] human gut metagenome; human gut
30677
30602
-
Asn
GTT
[ENA]
¢þ
>WENV182797457
OJSY01000085
[OJSY] human gut metagenome; human gut
31669
31758
+
Ser
CGA
[ENA]
¢þ
>WENV182797449
OJSY01000053
[OJSY] human gut metagenome; human gut
35415
35491
+
Pro
GGG
[ENA]
¢þ
>WENV182797438
OJSY01000024
[OJSY] human gut metagenome; human gut
37419
37332
-
Ser
TGA
[ENA]
¢þ
>WENV182797440
OJSY01000025
[OJSY] human gut metagenome; human gut
38204
38280
+
Arg
CCG
[ENA]
¢þ
>WENV182797444
OJSY01000027
[OJSY] human gut metagenome; human gut
38324
38230
-
SeC
TCA
[ENA]
¢þ
>WENV182797441
OJSY01000025
[OJSY] human gut metagenome; human gut
38336
38411
+
His
GTG
[ENA]
¢þ
>WENV182797451
OJSY01000073
[OJSY] human gut metagenome; human gut
38425
38350
-
Trp
CCA
[ENA]
¢þ
>WENV182797442
OJSY01000025
[OJSY] human gut metagenome; human gut
38435
38521
+
Leu
CAG
[ENA]
¢þ
>WENV182797443
OJSY01000025
[OJSY] human gut metagenome; human gut
38564
38640
+
Pro
TGG
[ENA]
¢þ
>WENV182797433
OJSY01000013
[OJSY] human gut metagenome; human gut
40390
40317
-
Gly
CCC
[ENA]
¢þ
>WENV182797447
OJSY01000050
[OJSY] human gut metagenome; human gut
50424
50349
-
Ile2
CAT
[ENA]
¢þ
>WENV182797424
OJSY01000002
[OJSY] human gut metagenome; human gut
65418
65343
-
Thr
CGT
[ENA]
¢þ
>WENV182797434
OJSY01000015
[OJSY] human gut metagenome; human gut
75323
75248
-
Phe
GAA
[ENA]
¢þ
>WENV182797425
OJSY01000003
[OJSY] human gut metagenome; human gut
139873
139949
+
Pro
GGG
[ENA]
¢þ
>WENV182797432
OJSY01000006
[OJSY] human gut metagenome; human gut
154344
154268
-
fMet
CAT
[ENA]
¢þ
>WENV182797431
OJSY01000006
[OJSY] human gut metagenome; human gut
154453
154377
-
fMet
CAT
[ENA]
¢þ
>WENV182797430
OJSY01000006
[OJSY] human gut metagenome; human gut
154562
154486
-
fMet
CAT
[ENA]
¢þ
>WENV182797428
OJSY01000004
[OJSY] human gut metagenome; human gut
187318
187242
-
Val
GAC
[ENA]
¢þ
>WENV182797421
OJSY01000001
[OJSY] human gut metagenome; human gut
187326
187240
-
Leu
TAA
[ENA]
¢þ
>WENV182797420
OJSY01000001
[OJSY] human gut metagenome; human gut
187413
187340
-
Cys
GCA
[ENA]
¢þ
>WENV182797419
OJSY01000001
[OJSY] human gut metagenome; human gut
187529
187454
-
Gly
GCC
[ENA]
¢þ
>WENV182797418
OJSY01000001
[OJSY] human gut metagenome; human gut
208730
208641
-
Ser
CGA
[ENA]
¢þ
>WENV182797414
OJSY01000001
[OJSY] human gut metagenome; human gut
209722
209797
+
Asn
GTT
[ENA]
¢þ
>WENV182797415
OJSY01000001
[OJSY] human gut metagenome; human gut
228248
228323
+
Asn
GTT
[ENA]
¢þ
>WENV182797417
OJSY01000001
[OJSY] human gut metagenome; human gut
248457
248382
-
Asn
GTT
[ENA]
¢þ
>WENV182797416
OJSY01000001
[OJSY] human gut metagenome; human gut
250216
250291
+
Asn
GTT
[ENA]
¢þ
>WENV182797426
OJSY01000003
[OJSY] human gut metagenome; human gut
267021
267095
+
Arg
CCT
[ENA]
¢þ
>WENV182797423
OJSY01000002
[OJSY] human gut metagenome; human gut
281571
281647
+
Arg
TCT
[ENA]
¢þ
>WENV182797427
OJSY01000003
[OJSY] human gut metagenome; human gut
287497
287422
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK