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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJTH] human gut metagenome; human gut
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182798377
OJTH01000532
[OJTH] human gut metagenome; human gut
84
168
+
Leu
GAG
[ENA]
¢þ
>WENV182798331
OJTH01000058
[OJTH] human gut metagenome; human gut
169
93
-
Arg
TCT
[ENA]
¢þ
>WENV182798382
OJTH01001153
[OJTH] human gut metagenome; human gut
183
109
-
Gln
CTG
[ENA]
¢þ
>WENV182798365
OJTH01000387
[OJTH] human gut metagenome; human gut
228
154
-
Val
GAC
[ENA]
¢þ
>WENV182798330
OJTH01000058
[OJTH] human gut metagenome; human gut
285
209
-
Pro
TGG
[ENA]
¢þ
>WENV182798381
OJTH01001153
[OJTH] human gut metagenome; human gut
315
239
-
Met
CAT
[ENA]
¢þ
>WENV182798374
OJTH01000475
[OJTH] human gut metagenome; human gut
315
240
-
Glu
TTC
[ENA]
¢þ
>WENV182798373
OJTH01000475
[OJTH] human gut metagenome; human gut
445
370
-
Ala
GGC
[ENA]
¢þ
>WENV182798383
OJTH01001344
[OJTH] human gut metagenome; human gut
478
395
-
Leu
CAA
[ENA]
¢þ
>WENV182798313
OJTH01000005
[OJTH] human gut metagenome; human gut
747
823
+
Gln
TTG
[ENA]
¢þ
>WENV182798375
OJTH01000519
[OJTH] human gut metagenome; human gut
1111
1203
+
Ser
GCT
[ENA]
¢þ
>WENV182798376
OJTH01000524
[OJTH] human gut metagenome; human gut
1309
1395
+
Leu
TAA
[ENA]
¢þ
>WENV182798378
OJTH01000537
[OJTH] human gut metagenome; human gut
1375
1467
+
Ser
GGA
[ENA]
¢þ
>WENV182798364
OJTH01000354
[OJTH] human gut metagenome; human gut
1517
1444
-
Cys
GCA
[ENA]
¢þ
>WENV182798363
OJTH01000354
[OJTH] human gut metagenome; human gut
1659
1584
-
Gly
GCC
[ENA]
¢þ
>WENV182798354
OJTH01000195
[OJTH] human gut metagenome; human gut
1691
1617
-
Gly
GCC
[ENA]
¢þ
>WENV182798357
OJTH01000256
[OJTH] human gut metagenome; human gut
1713
1787
+
Val
CAC
[ENA]
¢þ
>WENV182798380
OJTH01000772
[OJTH] human gut metagenome; human gut
1845
1761
-
Leu
CAG
[ENA]
¢þ
>WENV182798362
OJTH01000354
[OJTH] human gut metagenome; human gut
1877
1802
-
Gly
GCC
[ENA]
¢þ
>WENV182798360
OJTH01000317
[OJTH] human gut metagenome; human gut
2140
2216
+
His
GTG
[ENA]
¢þ
>WENV182798358
OJTH01000297
[OJTH] human gut metagenome; human gut
2661
2736
+
Gly
GCC
[ENA]
¢þ
>WENV182798379
OJTH01000555
[OJTH] human gut metagenome; human gut
3254
3330
+
Asn
GTT
[ENA]
¢þ
>WENV182798366
OJTH01000411
[OJTH] human gut metagenome; human gut
3343
3418
+
Ala
CGC
[ENA]
¢þ
>WENV182798371
OJTH01000422
[OJTH] human gut metagenome; human gut
3357
3282
-
Phe
GAA
[ENA]
¢þ
>WENV182798369
OJTH01000417
[OJTH] human gut metagenome; human gut
3441
3365
-
Ile
GAT
[ENA]
¢þ
>WENV182798370
OJTH01000422
[OJTH] human gut metagenome; human gut
3504
3429
-
Phe
GAA
[ENA]
¢þ
>WENV182798368
OJTH01000417
[OJTH] human gut metagenome; human gut
3539
3464
-
Ala
TGC
[ENA]
¢þ
>WENV182798353
OJTH01000195
[OJTH] human gut metagenome; human gut
3947
3874
-
Gly
CCC
[ENA]
¢þ
>WENV182798361
OJTH01000348
[OJTH] human gut metagenome; human gut
4148
4223
+
Lys
TTT
[ENA]
¢þ
>WENV182798342
OJTH01000162
[OJTH] human gut metagenome; human gut
4216
4292
+
Arg
CCG
[ENA]
¢þ
>WENV182798372
OJTH01000427
[OJTH] human gut metagenome; human gut
4832
4908
+
Arg
ACG
[ENA]
¢þ
>WENV182798332
OJTH01000090
[OJTH] human gut metagenome; human gut
4843
4918
+
Lys
CTT
[ENA]
¢þ
>WENV182798367
OJTH01000415
[OJTH] human gut metagenome; human gut
4976
4902
-
Glu
CTC
[ENA]
¢þ
>WENV182798338
OJTH01000105
[OJTH] human gut metagenome; human gut
5074
5164
+
Ser
CGA
[ENA]
¢þ
>WENV182798340
OJTH01000107
[OJTH] human gut metagenome; human gut
5280
5369
+
Ser
TGA
[ENA]
¢þ
>WENV182798355
OJTH01000203
[OJTH] human gut metagenome; human gut
5422
5498
+
Arg
CCT
[ENA]
¢þ
>WENV182798333
OJTH01000090
[OJTH] human gut metagenome; human gut
5845
5929
+
Leu
TAG
[ENA]
¢þ
>WENV182798359
OJTH01000297
[OJTH] human gut metagenome; human gut
5934
6009
+
Gly
GCC
[ENA]
¢þ
>WENV182798356
OJTH01000219
[OJTH] human gut metagenome; human gut
6770
6685
-
Leu
CAA
[ENA]
¢þ
>WENV182798343
OJTH01000172
[OJTH] human gut metagenome; human gut
7222
7295
+
fMet
CAT
[ENA]
¢þ
>WENV182798327
OJTH01000022
[OJTH] human gut metagenome; human gut
7295
7203
-
Ser
TGA
[ENA]
¢þ
>WENV182798344
OJTH01000172
[OJTH] human gut metagenome; human gut
7310
7385
+
Asp
GTC
[ENA]
¢þ
>WENV182798345
OJTH01000172
[OJTH] human gut metagenome; human gut
7395
7469
+
Phe
GAA
[ENA]
¢þ
>WENV182798346
OJTH01000172
[OJTH] human gut metagenome; human gut
7482
7557
+
His
GTG
[ENA]
¢þ
>WENV182798347
OJTH01000172
[OJTH] human gut metagenome; human gut
7575
7648
+
Gly
TCC
[ENA]
¢þ
>WENV182798348
OJTH01000172
[OJTH] human gut metagenome; human gut
7658
7732
+
Asn
GTT
[ENA]
¢þ
>WENV182798349
OJTH01000172
[OJTH] human gut metagenome; human gut
7733
7806
+
Glu
TTC
[ENA]
¢þ
>WENV182798350
OJTH01000172
[OJTH] human gut metagenome; human gut
7858
7948
+
Ser
GGA
[ENA]
¢þ
>WENV182798312
OJTH01000004
[OJTH] human gut metagenome; human gut
8344
8419
+
Thr
CGT
[ENA]
¢þ
>WENV182798352
OJTH01000181
[OJTH] human gut metagenome; human gut
8525
8449
-
Pro
GGG
[ENA]
¢þ
>WENV182798351
OJTH01000176
[OJTH] human gut metagenome; human gut
8655
8731
+
fMet
CAT
[ENA]
¢þ
>WENV182798336
OJTH01000094
[OJTH] human gut metagenome; human gut
9126
9050
-
Asn
GTT
[ENA]
¢þ
>WENV182798337
OJTH01000102
[OJTH] human gut metagenome; human gut
9370
9275
-
SeC
TCA
[ENA]
¢þ
>WENV182798314
OJTH01000005
[OJTH] human gut metagenome; human gut
10175
10260
+
Tyr
GTA
[ENA]
¢þ
>WENV182798315
OJTH01000005
[OJTH] human gut metagenome; human gut
10285
10358
+
Gly
TCC
[ENA]
¢þ
>WENV182798316
OJTH01000005
[OJTH] human gut metagenome; human gut
10408
10483
+
Thr
GGT
[ENA]
¢þ
>WENV182798317
OJTH01000005
[OJTH] human gut metagenome; human gut
11818
11893
+
Trp
CCA
[ENA]
¢þ
>WENV182798339
OJTH01000106
[OJTH] human gut metagenome; human gut
11991
11915
-
Pro
CGG
[ENA]
¢þ
>WENV182798341
OJTH01000114
[OJTH] human gut metagenome; human gut
12344
12269
-
Thr
TGT
[ENA]
¢þ
>WENV182798334
OJTH01000090
[OJTH] human gut metagenome; human gut
12631
12705
+
Val
TAC
[ENA]
¢þ
>WENV182798335
OJTH01000090
[OJTH] human gut metagenome; human gut
12732
12808
+
Asp
GTC
[ENA]
¢þ
>WENV182798329
OJTH01000027
[OJTH] human gut metagenome; human gut
19662
19587
-
Ile2
CAT
[ENA]
¢þ
>WENV182798328
OJTH01000026
[OJTH] human gut metagenome; human gut
22837
22911
+
Arg
TCT
[ENA]
¢þ
>WENV182798326
OJTH01000015
[OJTH] human gut metagenome; human gut
32219
32148
-
Arg
CCG
[ENA]
¢þ
>WENV182798318
OJTH01000012
[OJTH] human gut metagenome; human gut
38930
39005
+
Val
TAC
[ENA]
¢þ
>WENV182798319
OJTH01000012
[OJTH] human gut metagenome; human gut
39012
39087
+
Thr
TGT
[ENA]
¢þ
>WENV182798320
OJTH01000012
[OJTH] human gut metagenome; human gut
39093
39167
+
Lys
TTT
[ENA]
¢þ
>WENV182798321
OJTH01000012
[OJTH] human gut metagenome; human gut
39185
39259
+
Gly
GCC
[ENA]
¢þ
>WENV182798322
OJTH01000012
[OJTH] human gut metagenome; human gut
39271
39359
+
Leu
TAA
[ENA]
¢þ
>WENV182798323
OJTH01000012
[OJTH] human gut metagenome; human gut
39372
39448
+
Arg
ACG
[ENA]
¢þ
>WENV182798324
OJTH01000012
[OJTH] human gut metagenome; human gut
39475
39549
+
Pro
TGG
[ENA]
¢þ
>WENV182798325
OJTH01000012
[OJTH] human gut metagenome; human gut
39563
39638
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK