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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJUB] human gut metagenome; human gut
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182800382
OJUB01000004
[OJUB] human gut metagenome; human gut
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182800396
OJUB01000008
[OJUB] human gut metagenome; human gut
95
170
+
Ala
GGC
[ENA]
¢þ
>WENV182800407
OJUB01000013
[OJUB] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182800383
OJUB01000004
[OJUB] human gut metagenome; human gut
222
297
+
Lys
TTT
[ENA]
¢þ
>WENV182800384
OJUB01000004
[OJUB] human gut metagenome; human gut
333
408
+
Lys
TTT
[ENA]
¢þ
>WENV182800395
OJUB01000007
[OJUB] human gut metagenome; human gut
1142
1067
-
Asn
GTT
[ENA]
¢þ
>WENV182800428
OJUB01000052
[OJUB] human gut metagenome; human gut
2764
2839
+
Ala
GGC
[ENA]
¢þ
>WENV182800389
OJUB01000007
[OJUB] human gut metagenome; human gut
2919
2994
+
Asn
GTT
[ENA]
¢þ
>WENV182800425
OJUB01000048
[OJUB] human gut metagenome; human gut
3573
3648
+
Thr
TGT
[ENA]
¢þ
>WENV182800426
OJUB01000048
[OJUB] human gut metagenome; human gut
3659
3743
+
Tyr
GTA
[ENA]
¢þ
>WENV182800427
OJUB01000048
[OJUB] human gut metagenome; human gut
3863
3937
+
Gly
TCC
[ENA]
¢þ
>WENV182800398
OJUB01000008
[OJUB] human gut metagenome; human gut
17659
17588
-
Arg
CCT
[ENA]
¢þ
>WENV182800408
OJUB01000014
[OJUB] human gut metagenome; human gut
19452
19539
+
Ser
TGA
[ENA]
¢þ
>WENV182800394
OJUB01000007
[OJUB] human gut metagenome; human gut
22909
22834
-
Asn
GTT
[ENA]
¢þ
>WENV182800390
OJUB01000007
[OJUB] human gut metagenome; human gut
23901
23990
+
Ser
CGA
[ENA]
¢þ
>WENV182800424
OJUB01000032
[OJUB] human gut metagenome; human gut
28807
28882
+
Asn
GTT
[ENA]
¢þ
>WENV182800381
OJUB01000003
[OJUB] human gut metagenome; human gut
29574
29480
-
SeC
TCA
[ENA]
¢þ
>WENV182800403
OJUB01000009
[OJUB] human gut metagenome; human gut
35312
35228
-
Tyr
GTA
[ENA]
¢þ
>WENV182800402
OJUB01000009
[OJUB] human gut metagenome; human gut
35432
35348
-
Tyr
GTA
[ENA]
¢þ
>WENV182800416
OJUB01000023
[OJUB] human gut metagenome; human gut
45852
45938
+
Leu
GAG
[ENA]
¢þ
>WENV182800417
OJUB01000023
[OJUB] human gut metagenome; human gut
47743
47819
+
fMet
CAT
[ENA]
¢þ
>WENV182800410
OJUB01000015
[OJUB] human gut metagenome; human gut
47823
47748
-
Ile2
CAT
[ENA]
¢þ
>WENV182800391
OJUB01000007
[OJUB] human gut metagenome; human gut
48919
48994
+
Gly
GCC
[ENA]
¢þ
>WENV182800392
OJUB01000007
[OJUB] human gut metagenome; human gut
49033
49106
+
Cys
GCA
[ENA]
¢þ
>WENV182800393
OJUB01000007
[OJUB] human gut metagenome; human gut
49120
49206
+
Leu
TAA
[ENA]
¢þ
>WENV182800422
OJUB01000024
[OJUB] human gut metagenome; human gut
51498
51422
-
Pro
TGG
[ENA]
¢þ
>WENV182800421
OJUB01000024
[OJUB] human gut metagenome; human gut
51630
51544
-
Leu
CAG
[ENA]
¢þ
>WENV182800420
OJUB01000024
[OJUB] human gut metagenome; human gut
51728
51653
-
His
GTG
[ENA]
¢þ
>WENV182800419
OJUB01000024
[OJUB] human gut metagenome; human gut
51860
51784
-
Arg
CCG
[ENA]
¢þ
>WENV182800423
OJUB01000027
[OJUB] human gut metagenome; human gut
62537
62621
+
Leu
CAA
[ENA]
¢þ
>WENV182800404
OJUB01000010
[OJUB] human gut metagenome; human gut
71215
71301
+
Leu
CAG
[ENA]
¢þ
>WENV182800405
OJUB01000010
[OJUB] human gut metagenome; human gut
71330
71416
+
Leu
CAG
[ENA]
¢þ
>WENV182800406
OJUB01000010
[OJUB] human gut metagenome; human gut
71448
71534
+
Leu
CAG
[ENA]
¢þ
>WENV182800415
OJUB01000021
[OJUB] human gut metagenome; human gut
77826
77899
+
Gly
CCC
[ENA]
¢þ
>WENV182800369
OJUB01000001
[OJUB] human gut metagenome; human gut
81553
81629
+
Met
CAT
[ENA]
¢þ
>WENV182800370
OJUB01000001
[OJUB] human gut metagenome; human gut
81638
81722
+
Leu
TAG
[ENA]
¢þ
>WENV182800371
OJUB01000001
[OJUB] human gut metagenome; human gut
81758
81832
+
Gln
TTG
[ENA]
¢þ
>WENV182800372
OJUB01000001
[OJUB] human gut metagenome; human gut
81867
81941
+
Gln
TTG
[ENA]
¢þ
>WENV182800373
OJUB01000001
[OJUB] human gut metagenome; human gut
81964
82040
+
Met
CAT
[ENA]
¢þ
>WENV182800374
OJUB01000001
[OJUB] human gut metagenome; human gut
82086
82160
+
Gln
CTG
[ENA]
¢þ
>WENV182800375
OJUB01000001
[OJUB] human gut metagenome; human gut
82258
82332
+
Gln
CTG
[ENA]
¢þ
>WENV182800418
OJUB01000024
[OJUB] human gut metagenome; human gut
96764
96689
-
Trp
CCA
[ENA]
¢þ
>WENV182800414
OJUB01000019
[OJUB] human gut metagenome; human gut
124326
124250
-
Arg
ACG
[ENA]
¢þ
>WENV182800413
OJUB01000019
[OJUB] human gut metagenome; human gut
124595
124519
-
Arg
ACG
[ENA]
¢þ
>WENV182800412
OJUB01000019
[OJUB] human gut metagenome; human gut
124864
124788
-
Arg
ACG
[ENA]
¢þ
>WENV182800411
OJUB01000019
[OJUB] human gut metagenome; human gut
125001
124925
-
Arg
ACG
[ENA]
¢þ
>WENV182800409
OJUB01000015
[OJUB] human gut metagenome; human gut
135099
135024
-
Phe
GAA
[ENA]
¢þ
>WENV182800388
OJUB01000006
[OJUB] human gut metagenome; human gut
136727
136652
-
Phe
GAA
[ENA]
¢þ
>WENV182800397
OJUB01000008
[OJUB] human gut metagenome; human gut
155144
155068
-
Pro
GGG
[ENA]
¢þ
>WENV182800380
OJUB01000003
[OJUB] human gut metagenome; human gut
179847
179923
+
Pro
CGG
[ENA]
¢þ
>WENV182800385
OJUB01000006
[OJUB] human gut metagenome; human gut
180168
180243
+
Gly
GCC
[ENA]
¢þ
>WENV182800386
OJUB01000006
[OJUB] human gut metagenome; human gut
180268
180343
+
Gly
GCC
[ENA]
¢þ
>WENV182800387
OJUB01000006
[OJUB] human gut metagenome; human gut
180368
180443
+
Gly
GCC
[ENA]
¢þ
>WENV182800401
OJUB01000009
[OJUB] human gut metagenome; human gut
204489
204413
-
Val
GAC
[ENA]
¢þ
>WENV182800400
OJUB01000009
[OJUB] human gut metagenome; human gut
204570
204494
-
Val
GAC
[ENA]
¢þ
>WENV182800399
OJUB01000009
[OJUB] human gut metagenome; human gut
204651
204575
-
Val
GAC
[ENA]
¢þ
>WENV182800379
OJUB01000001
[OJUB] human gut metagenome; human gut
300801
300725
-
Arg
TCT
[ENA]
¢þ
>WENV182800376
OJUB01000001
[OJUB] human gut metagenome; human gut
568677
568752
+
Thr
CGT
[ENA]
¢þ
>WENV182800378
OJUB01000001
[OJUB] human gut metagenome; human gut
643285
643209
-
Asp
GTC
[ENA]
¢þ
>WENV182800377
OJUB01000001
[OJUB] human gut metagenome; human gut
652713
652637
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK