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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[OJUC] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182800455
OJUC01001964
[OJUC] human gut metagenome; human gut
2
77
+
Ala
GGC
[ENA]
¢þ
>WENV182800443
OJUC01000620
[OJUC] human gut metagenome; human gut
92
167
+
Gly
GCC
[ENA]
¢þ
>WENV182800458
OJUC01002155
[OJUC] human gut metagenome; human gut
93
4
-
Ser
CGA
[ENA]
¢þ
>WENV182800446
OJUC01000811
[OJUC] human gut metagenome; human gut
93
167
+
Gln
CTG
[ENA]
¢þ
>WENV182800459
OJUC01003087
[OJUC] human gut metagenome; human gut
100
13
-
Ser
GGA
[ENA]
¢þ
>WENV182800457
OJUC01002052
[OJUC] human gut metagenome; human gut
117
43
-
Asn
GTT
[ENA]
¢þ
>WENV182800442
OJUC01000497
[OJUC] human gut metagenome; human gut
149
74
-
His
GTG
[ENA]
¢þ
>WENV182800460
OJUC01003106
[OJUC] human gut metagenome; human gut
152
226
+
Gly
TCC
[ENA]
¢þ
>WENV182800452
OJUC01001695
[OJUC] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182800456
OJUC01002048
[OJUC] human gut metagenome; human gut
178
103
-
Lys
TTT
[ENA]
¢þ
>WENV182800444
OJUC01000620
[OJUC] human gut metagenome; human gut
221
294
+
Cys
GCA
[ENA]
¢þ
>WENV182800461
OJUC01003106
[OJUC] human gut metagenome; human gut
233
308
+
Thr
GGT
[ENA]
¢þ
>WENV182800441
OJUC01000497
[OJUC] human gut metagenome; human gut
284
208
-
Arg
CCG
[ENA]
¢þ
>WENV182800445
OJUC01000620
[OJUC] human gut metagenome; human gut
307
393
+
Leu
TAA
[ENA]
¢þ
>WENV182800449
OJUC01001238
[OJUC] human gut metagenome; human gut
517
433
-
Tyr
GTA
[ENA]
¢þ
>WENV182800453
OJUC01001727
[OJUC] human gut metagenome; human gut
607
523
-
Leu
CAA
[ENA]
¢þ
>WENV182800451
OJUC01001562
[OJUC] human gut metagenome; human gut
701
625
-
Val
GAC
[ENA]
¢þ
>WENV182800454
OJUC01001739
[OJUC] human gut metagenome; human gut
714
790
+
Arg
TCT
[ENA]
¢þ
>WENV182800450
OJUC01001411
[OJUC] human gut metagenome; human gut
807
882
+
Thr
CGT
[ENA]
¢þ
>WENV182800448
OJUC01000951
[OJUC] human gut metagenome; human gut
1303
1378
+
Thr
TGT
[ENA]
¢þ
>WENV182800447
OJUC01000935
[OJUC] human gut metagenome; human gut
1354
1427
+
Gly
CCC
[ENA]
¢þ
>WENV182800432
OJUC01000059
[OJUC] human gut metagenome; human gut
1478
1554
+
Pro
CGG
[ENA]
¢þ
>WENV182800439
OJUC01000355
[OJUC] human gut metagenome; human gut
2082
2157
+
Phe
GAA
[ENA]
¢þ
>WENV182800434
OJUC01000074
[OJUC] human gut metagenome; human gut
2185
2111
-
Ala
TGC
[ENA]
¢þ
>WENV182800440
OJUC01000364
[OJUC] human gut metagenome; human gut
2246
2171
-
Asn
GTT
[ENA]
¢þ
>WENV182800433
OJUC01000074
[OJUC] human gut metagenome; human gut
2290
2214
-
Ile
GAT
[ENA]
¢þ
>WENV182800438
OJUC01000249
[OJUC] human gut metagenome; human gut
2512
2437
-
Ile2
CAT
[ENA]
¢þ
>WENV182800437
OJUC01000142
[OJUC] human gut metagenome; human gut
2518
2604
+
Leu
CAG
[ENA]
¢þ
>WENV182800436
OJUC01000091
[OJUC] human gut metagenome; human gut
2983
2907
-
Arg
ACG
[ENA]
¢þ
>WENV182800435
OJUC01000091
[OJUC] human gut metagenome; human gut
3079
2987
-
Ser
GCT
[ENA]
¢þ
>WENV182800429
OJUC01000002
[OJUC] human gut metagenome; human gut
4449
4524
+
Glu
TTC
[ENA]
¢þ
>WENV182800430
OJUC01000002
[OJUC] human gut metagenome; human gut
7888
7964
+
Asp
GTC
[ENA]
¢þ
>WENV182800431
OJUC01000002
[OJUC] human gut metagenome; human gut
7973
8048
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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