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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJUJ] human gut metagenome; human gut
HIT:
149 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182803237
OJUJ01001704
[OJUJ] human gut metagenome; human gut
9
83
+
Val
TAC
[ENA]
¢þ
>WENV182803174
OJUJ01000197
[OJUJ] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182803205
OJUJ01000531
[OJUJ] human gut metagenome; human gut
65
139
+
Cys
GCA
[ENA]
¢þ
>WENV182803238
OJUJ01001704
[OJUJ] human gut metagenome; human gut
93
168
+
Asp
GTC
[ENA]
¢þ
>WENV182803200
OJUJ01000441
[OJUJ] human gut metagenome; human gut
132
57
-
Lys
TTT
[ENA]
¢þ
>WENV182803211
OJUJ01000769
[OJUJ] human gut metagenome; human gut
137
54
-
Leu
CAA
[ENA]
¢þ
>WENV182803274
OJUJ01005499
[OJUJ] human gut metagenome; human gut
150
69
-
Leu
TAG
[ENA]
¢þ
>WENV182803257
OJUJ01003472
[OJUJ] human gut metagenome; human gut
151
65
-
Ser
TGA
[ENA]
¢þ
>WENV182803270
OJUJ01004459
[OJUJ] human gut metagenome; human gut
152
227
+
Trp
CCA
[ENA]
¢þ
>WENV182803206
OJUJ01000531
[OJUJ] human gut metagenome; human gut
154
242
+
Leu
TAA
[ENA]
¢þ
>WENV182803263
OJUJ01004139
[OJUJ] human gut metagenome; human gut
155
82
-
Gly
GCC
[ENA]
¢þ
>WENV182803252
OJUJ01002349
[OJUJ] human gut metagenome; human gut
176
105
-
Trp
CCA
[ENA]
¢þ
>WENV182803271
OJUJ01004461
[OJUJ] human gut metagenome; human gut
182
106
-
Pro
CGG
[ENA]
¢þ
>WENV182803199
OJUJ01000441
[OJUJ] human gut metagenome; human gut
211
137
-
Gln
TTG
[ENA]
¢þ
>WENV182803239
OJUJ01001704
[OJUJ] human gut metagenome; human gut
214
286
+
Phe
GAA
[ENA]
¢þ
>WENV182803240
OJUJ01001704
[OJUJ] human gut metagenome; human gut
291
373
+
Tyr
GTA
[ENA]
¢þ
>WENV182803217
OJUJ01000832
[OJUJ] human gut metagenome; human gut
311
235
-
Met
CAT
[ENA]
¢þ
>WENV182803198
OJUJ01000441
[OJUJ] human gut metagenome; human gut
311
236
-
His
GTG
[ENA]
¢þ
>WENV182803273
OJUJ01005499
[OJUJ] human gut metagenome; human gut
317
244
-
Thr
CGT
[ENA]
¢þ
>WENV182803261
OJUJ01003997
[OJUJ] human gut metagenome; human gut
348
272
-
Asp
GTC
[ENA]
¢þ
>WENV182803275
OJUJ01005563
[OJUJ] human gut metagenome; human gut
357
432
+
Phe
GAA
[ENA]
¢þ
>WENV182803269
OJUJ01004376
[OJUJ] human gut metagenome; human gut
361
448
+
Ser
GGA
[ENA]
¢þ
>WENV182803241
OJUJ01001704
[OJUJ] human gut metagenome; human gut
377
450
+
Trp
CCA
[ENA]
¢þ
>WENV182803216
OJUJ01000832
[OJUJ] human gut metagenome; human gut
392
317
-
Thr
GGT
[ENA]
¢þ
>WENV182803262
OJUJ01004139
[OJUJ] human gut metagenome; human gut
444
518
+
Val
CAC
[ENA]
¢þ
>WENV182803259
OJUJ01003843
[OJUJ] human gut metagenome; human gut
454
382
-
Gln
TTG
[ENA]
¢þ
>WENV182803272
OJUJ01004953
[OJUJ] human gut metagenome; human gut
474
547
+
Arg
CCT
[ENA]
¢þ
>WENV182803267
OJUJ01004305
[OJUJ] human gut metagenome; human gut
474
550
+
Arg
ACG
[ENA]
¢þ
>WENV182803242
OJUJ01001704
[OJUJ] human gut metagenome; human gut
487
560
+
His
GTG
[ENA]
¢þ
>WENV182803215
OJUJ01000832
[OJUJ] human gut metagenome; human gut
499
424
-
fMet
CAT
[ENA]
¢þ
>WENV182803264
OJUJ01004180
[OJUJ] human gut metagenome; human gut
540
632
+
Ser
GCT
[ENA]
¢þ
>WENV182803266
OJUJ01004261
[OJUJ] human gut metagenome; human gut
542
468
-
Arg
TCT
[ENA]
¢þ
>WENV182803268
OJUJ01004305
[OJUJ] human gut metagenome; human gut
563
637
+
Glu
TTC
[ENA]
¢þ
>WENV182803258
OJUJ01003555
[OJUJ] human gut metagenome; human gut
566
646
+
Leu
TAA
[ENA]
¢þ
>WENV182803243
OJUJ01001704
[OJUJ] human gut metagenome; human gut
573
646
+
Gln
TTG
[ENA]
¢þ
>WENV182803260
OJUJ01003884
[OJUJ] human gut metagenome; human gut
581
666
+
Leu
GAG
[ENA]
¢þ
>WENV182803214
OJUJ01000832
[OJUJ] human gut metagenome; human gut
589
505
-
Tyr
GTA
[ENA]
¢þ
>WENV182803232
OJUJ01001192
[OJUJ] human gut metagenome; human gut
596
672
+
Ile
GAT
[ENA]
¢þ
>WENV182803254
OJUJ01002752
[OJUJ] human gut metagenome; human gut
614
686
+
Glu
TTC
[ENA]
¢þ
>WENV182803235
OJUJ01001370
[OJUJ] human gut metagenome; human gut
623
697
+
Ile2
CAT
[ENA]
¢þ
>WENV182803265
OJUJ01004180
[OJUJ] human gut metagenome; human gut
636
712
+
Arg
ACG
[ENA]
¢þ
>WENV182803249
OJUJ01001992
[OJUJ] human gut metagenome; human gut
670
594
-
Arg
TCT
[ENA]
¢þ
>WENV182803244
OJUJ01001704
[OJUJ] human gut metagenome; human gut
671
741
+
Cys
GCA
[ENA]
¢þ
>WENV182803213
OJUJ01000832
[OJUJ] human gut metagenome; human gut
675
600
-
Thr
TGT
[ENA]
¢þ
>WENV182803255
OJUJ01002803
[OJUJ] human gut metagenome; human gut
695
621
-
Leu
CAA
[ENA]
¢þ
>WENV182803210
OJUJ01000679
[OJUJ] human gut metagenome; human gut
705
795
+
Ser
GCT
[ENA]
¢þ
>WENV182803245
OJUJ01001704
[OJUJ] human gut metagenome; human gut
754
839
+
Leu
CAA
[ENA]
¢þ
>WENV182803233
OJUJ01001192
[OJUJ] human gut metagenome; human gut
802
877
+
Ala
TGC
[ENA]
¢þ
>WENV182803256
OJUJ01003110
[OJUJ] human gut metagenome; human gut
818
744
-
Met
CAT
[ENA]
¢þ
>WENV182803248
OJUJ01001992
[OJUJ] human gut metagenome; human gut
849
776
-
Gly
TCC
[ENA]
¢þ
>WENV182803247
OJUJ01001992
[OJUJ] human gut metagenome; human gut
936
860
-
Pro
TGG
[ENA]
¢þ
>WENV182803234
OJUJ01001346
[OJUJ] human gut metagenome; human gut
1007
1095
+
Ser
TGA
[ENA]
¢þ
>WENV182803236
OJUJ01001411
[OJUJ] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182803253
OJUJ01002461
[OJUJ] human gut metagenome; human gut
1182
1255
+
Gly
CCC
[ENA]
¢þ
>WENV182803209
OJUJ01000597
[OJUJ] human gut metagenome; human gut
1248
1172
-
Val
GAC
[ENA]
¢þ
>WENV182803165
OJUJ01000080
[OJUJ] human gut metagenome; human gut
1263
1191
-
Thr
CGT
[ENA]
¢þ
>WENV182803250
OJUJ01002113
[OJUJ] human gut metagenome; human gut
1301
1376
+
Glu
TTC
[ENA]
¢þ
>WENV182803208
OJUJ01000597
[OJUJ] human gut metagenome; human gut
1329
1253
-
Val
GAC
[ENA]
¢þ
>WENV182803251
OJUJ01002208
[OJUJ] human gut metagenome; human gut
1421
1346
-
Lys
CTT
[ENA]
¢þ
>WENV182803246
OJUJ01001915
[OJUJ] human gut metagenome; human gut
1697
1612
-
Leu
GAG
[ENA]
¢þ
>WENV182803177
OJUJ01000214
[OJUJ] human gut metagenome; human gut
2059
1974
-
Leu
GAG
[ENA]
¢þ
>WENV182803176
OJUJ01000214
[OJUJ] human gut metagenome; human gut
2147
2072
-
Phe
GAA
[ENA]
¢þ
>WENV182803212
OJUJ01000792
[OJUJ] human gut metagenome; human gut
2150
2074
-
Arg
CCT
[ENA]
¢þ
>WENV182803175
OJUJ01000214
[OJUJ] human gut metagenome; human gut
2228
2153
-
Asp
GTC
[ENA]
¢þ
>WENV182803227
OJUJ01000954
[OJUJ] human gut metagenome; human gut
3508
3583
+
Thr
TGT
[ENA]
¢þ
>WENV182803218
OJUJ01000873
[OJUJ] human gut metagenome; human gut
3565
3638
+
Arg
CCG
[ENA]
¢þ
>WENV182803228
OJUJ01000954
[OJUJ] human gut metagenome; human gut
3592
3676
+
Tyr
GTA
[ENA]
¢þ
>WENV182803226
OJUJ01000919
[OJUJ] human gut metagenome; human gut
3717
3644
-
Pro
TGG
[ENA]
¢þ
>WENV182803185
OJUJ01000267
[OJUJ] human gut metagenome; human gut
3792
3867
+
Asn
GTT
[ENA]
¢þ
>WENV182803229
OJUJ01000954
[OJUJ] human gut metagenome; human gut
3793
3867
+
Gly
TCC
[ENA]
¢þ
>WENV182803225
OJUJ01000919
[OJUJ] human gut metagenome; human gut
3802
3729
-
Arg
ACG
[ENA]
¢þ
>WENV182803230
OJUJ01000954
[OJUJ] human gut metagenome; human gut
3874
3949
+
Thr
GGT
[ENA]
¢þ
>WENV182803224
OJUJ01000919
[OJUJ] human gut metagenome; human gut
3902
3817
-
Leu
TAA
[ENA]
¢þ
>WENV182803186
OJUJ01000267
[OJUJ] human gut metagenome; human gut
3909
3999
+
Ser
GGA
[ENA]
¢þ
>WENV182803223
OJUJ01000919
[OJUJ] human gut metagenome; human gut
3989
3918
-
Gly
GCC
[ENA]
¢þ
>WENV182803187
OJUJ01000267
[OJUJ] human gut metagenome; human gut
4015
4088
+
Glu
TTC
[ENA]
¢þ
>WENV182803222
OJUJ01000919
[OJUJ] human gut metagenome; human gut
4069
3994
-
Thr
TGT
[ENA]
¢þ
>WENV182803231
OJUJ01000966
[OJUJ] human gut metagenome; human gut
4118
4191
+
Gly
CCC
[ENA]
¢þ
>WENV182803197
OJUJ01000421
[OJUJ] human gut metagenome; human gut
4120
4045
-
Arg
CCT
[ENA]
¢þ
>WENV182803221
OJUJ01000919
[OJUJ] human gut metagenome; human gut
4158
4075
-
Leu
TAG
[ENA]
¢þ
>WENV182803220
OJUJ01000919
[OJUJ] human gut metagenome; human gut
4247
4173
-
Lys
TTT
[ENA]
¢þ
>WENV182803219
OJUJ01000919
[OJUJ] human gut metagenome; human gut
4326
4252
-
Val
TAC
[ENA]
¢þ
>WENV182803173
OJUJ01000169
[OJUJ] human gut metagenome; human gut
4424
4348
-
Pro
CGG
[ENA]
¢þ
>WENV182803183
OJUJ01000247
[OJUJ] human gut metagenome; human gut
4556
4480
-
Arg
TCT
[ENA]
¢þ
>WENV182803182
OJUJ01000247
[OJUJ] human gut metagenome; human gut
4646
4570
-
Arg
TCG
[ENA]
¢þ
>WENV182803181
OJUJ01000247
[OJUJ] human gut metagenome; human gut
4729
4654
-
Ile2
CAT
[ENA]
¢þ
>WENV182803204
OJUJ01000521
[OJUJ] human gut metagenome; human gut
4996
5070
+
Ile2
CAT
[ENA]
¢þ
>WENV182803192
OJUJ01000284
[OJUJ] human gut metagenome; human gut
5216
5291
+
Asn
GTT
[ENA]
¢þ
>WENV182803201
OJUJ01000449
[OJUJ] human gut metagenome; human gut
5419
5505
+
Leu
GAG
[ENA]
¢þ
>WENV182803193
OJUJ01000295
[OJUJ] human gut metagenome; human gut
5450
5526
+
Arg
CCT
[ENA]
¢þ
>WENV182803191
OJUJ01000278
[OJUJ] human gut metagenome; human gut
5753
5669
-
Leu
TAG
[ENA]
¢þ
>WENV182803184
OJUJ01000253
[OJUJ] human gut metagenome; human gut
6034
6109
+
Thr
CGT
[ENA]
¢þ
>WENV182803202
OJUJ01000455
[OJUJ] human gut metagenome; human gut
6096
6168
+
Thr
GGT
[ENA]
¢þ
>WENV182803207
OJUJ01000562
[OJUJ] human gut metagenome; human gut
6569
6644
+
Thr
CGT
[ENA]
¢þ
>WENV182803188
OJUJ01000270
[OJUJ] human gut metagenome; human gut
7190
7265
+
Phe
GAA
[ENA]
¢þ
>WENV182803194
OJUJ01000341
[OJUJ] human gut metagenome; human gut
7213
7138
-
Gly
GCC
[ENA]
¢þ
>WENV182803203
OJUJ01000511
[OJUJ] human gut metagenome; human gut
7563
7489
-
Arg
CCG
[ENA]
¢þ
>WENV182803195
OJUJ01000362
[OJUJ] human gut metagenome; human gut
8202
8278
+
Asp
GTC
[ENA]
¢þ
>WENV182803131
OJUJ01000007
[OJUJ] human gut metagenome; human gut
8950
9034
+
Tyr
GTA
[ENA]
¢þ
>WENV182803150
OJUJ01000041
[OJUJ] human gut metagenome; human gut
9422
9498
+
Asp
GTC
[ENA]
¢þ
>WENV182803196
OJUJ01000398
[OJUJ] human gut metagenome; human gut
10280
10366
+
Leu
GAG
[ENA]
¢þ
>WENV182803178
OJUJ01000215
[OJUJ] human gut metagenome; human gut
10553
10639
+
Leu
GAG
[ENA]
¢þ
>WENV182803167
OJUJ01000109
[OJUJ] human gut metagenome; human gut
12818
12891
+
Gly
CCC
[ENA]
¢þ
>WENV182803171
OJUJ01000126
[OJUJ] human gut metagenome; human gut
13460
13385
-
Ala
GGC
[ENA]
¢þ
>WENV182803170
OJUJ01000126
[OJUJ] human gut metagenome; human gut
13575
13500
-
Ala
GGC
[ENA]
¢þ
>WENV182803180
OJUJ01000235
[OJUJ] human gut metagenome; human gut
14061
14136
+
Arg
TCT
[ENA]
¢þ
>WENV182803190
OJUJ01000278
[OJUJ] human gut metagenome; human gut
14072
13996
-
Arg
ACG
[ENA]
¢þ
>WENV182803189
OJUJ01000278
[OJUJ] human gut metagenome; human gut
14260
14185
-
Trp
CCA
[ENA]
¢þ
>WENV182803179
OJUJ01000215
[OJUJ] human gut metagenome; human gut
14420
14496
+
fMet
CAT
[ENA]
¢þ
>WENV182803168
OJUJ01000126
[OJUJ] human gut metagenome; human gut
16274
16349
+
Val
TAC
[ENA]
¢þ
>WENV182803169
OJUJ01000126
[OJUJ] human gut metagenome; human gut
16354
16429
+
Lys
TTT
[ENA]
¢þ
>WENV182803160
OJUJ01000060
[OJUJ] human gut metagenome; human gut
20565
20659
+
SeC
TCA
[ENA]
¢þ
>WENV182803151
OJUJ01000048
[OJUJ] human gut metagenome; human gut
21021
21108
+
Ser
GGA
[ENA]
¢þ
>WENV182803149
OJUJ01000034
[OJUJ] human gut metagenome; human gut
21652
21728
+
fMet
CAT
[ENA]
¢þ
>WENV182803140
OJUJ01000014
[OJUJ] human gut metagenome; human gut
21845
21932
+
Ser
TGA
[ENA]
¢þ
>WENV182803157
OJUJ01000053
[OJUJ] human gut metagenome; human gut
23294
23218
-
Val
GAC
[ENA]
¢þ
>WENV182803145
OJUJ01000024
[OJUJ] human gut metagenome; human gut
24592
24668
+
Pro
GGG
[ENA]
¢þ
>WENV182803172
OJUJ01000142
[OJUJ] human gut metagenome; human gut
24842
24918
+
Arg
TCT
[ENA]
¢þ
>WENV182803158
OJUJ01000057
[OJUJ] human gut metagenome; human gut
25972
25885
-
Ser
GGA
[ENA]
¢þ
>WENV182803164
OJUJ01000068
[OJUJ] human gut metagenome; human gut
28217
28311
+
SeC
TCA
[ENA]
¢þ
>WENV182803166
OJUJ01000105
[OJUJ] human gut metagenome; human gut
31554
31479
-
Ile2
CAT
[ENA]
¢þ
>WENV182803137
OJUJ01000010
[OJUJ] human gut metagenome; human gut
33239
33150
-
Ser
CGA
[ENA]
¢þ
>WENV182803142
OJUJ01000018
[OJUJ] human gut metagenome; human gut
34215
34291
+
Arg
TCT
[ENA]
¢þ
>WENV182803133
OJUJ01000010
[OJUJ] human gut metagenome; human gut
34231
34306
+
Asn
GTT
[ENA]
¢þ
>WENV182803156
OJUJ01000052
[OJUJ] human gut metagenome; human gut
35545
35469
-
Pro
TGG
[ENA]
¢þ
>WENV182803155
OJUJ01000052
[OJUJ] human gut metagenome; human gut
35674
35588
-
Leu
CAG
[ENA]
¢þ
>WENV182803154
OJUJ01000052
[OJUJ] human gut metagenome; human gut
35770
35695
-
His
GTG
[ENA]
¢þ
>WENV182803153
OJUJ01000052
[OJUJ] human gut metagenome; human gut
35905
35829
-
Arg
CCG
[ENA]
¢þ
>WENV182803144
OJUJ01000021
[OJUJ] human gut metagenome; human gut
38362
38288
-
Arg
CCT
[ENA]
¢þ
>WENV182803163
OJUJ01000062
[OJUJ] human gut metagenome; human gut
43518
43432
-
Leu
TAA
[ENA]
¢þ
>WENV182803162
OJUJ01000062
[OJUJ] human gut metagenome; human gut
43604
43531
-
Cys
GCA
[ENA]
¢þ
>WENV182803161
OJUJ01000062
[OJUJ] human gut metagenome; human gut
43733
43658
-
Gly
GCC
[ENA]
¢þ
>WENV182803147
OJUJ01000032
[OJUJ] human gut metagenome; human gut
43882
43795
-
Ser
TGA
[ENA]
¢þ
>WENV182803159
OJUJ01000059
[OJUJ] human gut metagenome; human gut
47614
47540
-
Gln
CTG
[ENA]
¢þ
>WENV182803143
OJUJ01000018
[OJUJ] human gut metagenome; human gut
50497
50570
+
Thr
TGT
[ENA]
¢þ
>WENV182803152
OJUJ01000051
[OJUJ] human gut metagenome; human gut
50629
50713
+
Leu
CAA
[ENA]
¢þ
>WENV182803132
OJUJ01000009
[OJUJ] human gut metagenome; human gut
54239
54315
+
Pro
CGG
[ENA]
¢þ
>WENV182803148
OJUJ01000033
[OJUJ] human gut metagenome; human gut
60415
60340
-
Ile2
CAT
[ENA]
¢þ
>WENV182803146
OJUJ01000029
[OJUJ] human gut metagenome; human gut
61084
61000
-
Tyr
GTA
[ENA]
¢þ
>WENV182803141
OJUJ01000017
[OJUJ] human gut metagenome; human gut
69606
69531
-
Phe
GAA
[ENA]
¢þ
>WENV182803136
OJUJ01000010
[OJUJ] human gut metagenome; human gut
74196
74121
-
Asn
GTT
[ENA]
¢þ
>WENV182803135
OJUJ01000010
[OJUJ] human gut metagenome; human gut
76605
76530
-
Asn
GTT
[ENA]
¢þ
>WENV182803130
OJUJ01000005
[OJUJ] human gut metagenome; human gut
77342
77418
+
Arg
TCT
[ENA]
¢þ
>WENV182803134
OJUJ01000010
[OJUJ] human gut metagenome; human gut
78354
78429
+
Asn
GTT
[ENA]
¢þ
>WENV182803139
OJUJ01000013
[OJUJ] human gut metagenome; human gut
79781
79695
-
Leu
CAG
[ENA]
¢þ
>WENV182803138
OJUJ01000011
[OJUJ] human gut metagenome; human gut
89429
89356
-
Gly
CCC
[ENA]
¢þ
>WENV182803129
OJUJ01000003
[OJUJ] human gut metagenome; human gut
119729
119643
-
Leu
TAA
[ENA]
¢þ
>WENV182803128
OJUJ01000003
[OJUJ] human gut metagenome; human gut
119815
119742
-
Cys
GCA
[ENA]
¢þ
>WENV182803127
OJUJ01000003
[OJUJ] human gut metagenome; human gut
119944
119869
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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