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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJUN] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182803697
OJUN01000153
[OJUN] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182803696
OJUN01000153
[OJUN] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182803695
OJUN01000153
[OJUN] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182803686
OJUN01000072
[OJUN] human gut metagenome; human gut
710
635
-
Thr
CGT
[ENA]
¢þ
>WENV182803694
OJUN01000153
[OJUN] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182803659
OJUN01000005
[OJUN] human gut metagenome; human gut
1226
1150
-
Arg
TCT
[ENA]
¢þ
>WENV182803698
OJUN01000154
[OJUN] human gut metagenome; human gut
1792
1867
+
Asn
GTT
[ENA]
¢þ
>WENV182803682
OJUN01000069
[OJUN] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182803688
OJUN01000103
[OJUN] human gut metagenome; human gut
3284
3208
-
Asp
GTC
[ENA]
¢þ
>WENV182803678
OJUN01000044
[OJUN] human gut metagenome; human gut
3401
3325
-
Pro
TGG
[ENA]
¢þ
>WENV182803693
OJUN01000114
[OJUN] human gut metagenome; human gut
3505
3429
-
Arg
TCT
[ENA]
¢þ
>WENV182803677
OJUN01000044
[OJUN] human gut metagenome; human gut
3530
3444
-
Leu
CAG
[ENA]
¢þ
>WENV182803692
OJUN01000114
[OJUN] human gut metagenome; human gut
3595
3519
-
Arg
TCG
[ENA]
¢þ
>WENV182803676
OJUN01000044
[OJUN] human gut metagenome; human gut
3626
3551
-
His
GTG
[ENA]
¢þ
>WENV182803691
OJUN01000114
[OJUN] human gut metagenome; human gut
3678
3603
-
Ile2
CAT
[ENA]
¢þ
>WENV182803675
OJUN01000044
[OJUN] human gut metagenome; human gut
3761
3685
-
Arg
CCG
[ENA]
¢þ
>WENV182803685
OJUN01000071
[OJUN] human gut metagenome; human gut
5279
5193
-
Leu
TAA
[ENA]
¢þ
>WENV182803684
OJUN01000071
[OJUN] human gut metagenome; human gut
5365
5292
-
Cys
GCA
[ENA]
¢þ
>WENV182803683
OJUN01000071
[OJUN] human gut metagenome; human gut
5494
5419
-
Gly
GCC
[ENA]
¢þ
>WENV182803690
OJUN01000111
[OJUN] human gut metagenome; human gut
8552
8626
+
Arg
CCT
[ENA]
¢þ
>WENV182803689
OJUN01000109
[OJUN] human gut metagenome; human gut
9497
9572
+
Lys
TTT
[ENA]
¢þ
>WENV182803687
OJUN01000080
[OJUN] human gut metagenome; human gut
10689
10776
+
Ser
TGA
[ENA]
¢þ
>WENV182803679
OJUN01000046
[OJUN] human gut metagenome; human gut
16678
16762
+
Leu
CAA
[ENA]
¢þ
>WENV182803655
OJUN01000002
[OJUN] human gut metagenome; human gut
16813
16899
+
Leu
GAG
[ENA]
¢þ
>WENV182803661
OJUN01000007
[OJUN] human gut metagenome; human gut
17652
17728
+
Pro
CGG
[ENA]
¢þ
>WENV182803656
OJUN01000002
[OJUN] human gut metagenome; human gut
20680
20756
+
fMet
CAT
[ENA]
¢þ
>WENV182803680
OJUN01000058
[OJUN] human gut metagenome; human gut
22305
22381
+
Val
GAC
[ENA]
¢þ
>WENV182803681
OJUN01000058
[OJUN] human gut metagenome; human gut
22386
22462
+
Val
GAC
[ENA]
¢þ
>WENV182803663
OJUN01000012
[OJUN] human gut metagenome; human gut
23324
23248
-
Pro
GGG
[ENA]
¢þ
>WENV182803660
OJUN01000006
[OJUN] human gut metagenome; human gut
27552
27636
+
Tyr
GTA
[ENA]
¢þ
>WENV182803668
OJUN01000013
[OJUN] human gut metagenome; human gut
32517
32443
-
Gln
CTG
[ENA]
¢þ
>WENV182803667
OJUN01000013
[OJUN] human gut metagenome; human gut
32642
32566
-
Met
CAT
[ENA]
¢þ
>WENV182803666
OJUN01000013
[OJUN] human gut metagenome; human gut
32732
32658
-
Gln
TTG
[ENA]
¢þ
>WENV182803665
OJUN01000013
[OJUN] human gut metagenome; human gut
32840
32756
-
Leu
TAG
[ENA]
¢þ
>WENV182803664
OJUN01000013
[OJUN] human gut metagenome; human gut
32926
32850
-
Met
CAT
[ENA]
¢þ
>WENV182803671
OJUN01000019
[OJUN] human gut metagenome; human gut
34103
34028
-
Gly
GCC
[ENA]
¢þ
>WENV182803674
OJUN01000044
[OJUN] human gut metagenome; human gut
38306
38231
-
Trp
CCA
[ENA]
¢þ
>WENV182803673
OJUN01000044
[OJUN] human gut metagenome; human gut
38391
38315
-
Asp
GTC
[ENA]
¢þ
>WENV182803672
OJUN01000036
[OJUN] human gut metagenome; human gut
39033
39127
+
SeC
TCA
[ENA]
¢þ
>WENV182803670
OJUN01000018
[OJUN] human gut metagenome; human gut
53552
53477
-
Asn
GTT
[ENA]
¢þ
>WENV182803669
OJUN01000018
[OJUN] human gut metagenome; human gut
54544
54633
+
Ser
CGA
[ENA]
¢þ
>WENV182803654
OJUN01000001
[OJUN] human gut metagenome; human gut
58074
57998
-
Arg
ACG
[ENA]
¢þ
>WENV182803653
OJUN01000001
[OJUN] human gut metagenome; human gut
58170
58078
-
Ser
GCT
[ENA]
¢þ
>WENV182803662
OJUN01000011
[OJUN] human gut metagenome; human gut
77084
77157
+
Gly
CCC
[ENA]
¢þ
>WENV182803658
OJUN01000004
[OJUN] human gut metagenome; human gut
89746
89670
-
Arg
TCT
[ENA]
¢þ
>WENV182803657
OJUN01000002
[OJUN] human gut metagenome; human gut
116406
116331
-
Ile2
CAT
[ENA]
¢þ
>WENV182803652
OJUN01000001
[OJUN] human gut metagenome; human gut
179139
179215
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK