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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
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|
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HOW TO USE
tRNA gene List
[OJUY] human gut metagenome; human gut
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182804946
OJUY01001541
[OJUY] human gut metagenome; human gut
44
132
+
Ser
GGA
[ENA]
¢þ
>WENV182804919
OJUY01000158
[OJUY] human gut metagenome; human gut
67
153
+
Leu
CAG
[ENA]
¢þ
>WENV182804929
OJUY01000270
[OJUY] human gut metagenome; human gut
88
13
-
His
GTG
[ENA]
¢þ
>WENV182804953
OJUY01002155
[OJUY] human gut metagenome; human gut
91
164
+
Ala
GGC
[ENA]
¢þ
>WENV182804948
OJUY01001986
[OJUY] human gut metagenome; human gut
121
45
-
fMet
CAT
[ENA]
¢þ
>WENV182804942
OJUY01001221
[OJUY] human gut metagenome; human gut
158
85
-
Val
CAC
[ENA]
¢þ
>WENV182804950
OJUY01002101
[OJUY] human gut metagenome; human gut
173
247
+
Gly
TCC
[ENA]
¢þ
>WENV182804943
OJUY01001390
[OJUY] human gut metagenome; human gut
174
87
-
Ser
GCT
[ENA]
¢þ
>WENV182804920
OJUY01000158
[OJUY] human gut metagenome; human gut
199
275
+
Pro
TGG
[ENA]
¢þ
>WENV182804928
OJUY01000270
[OJUY] human gut metagenome; human gut
220
144
-
Arg
CCG
[ENA]
¢þ
>WENV182804951
OJUY01002101
[OJUY] human gut metagenome; human gut
253
328
+
Thr
GGT
[ENA]
¢þ
>WENV182804941
OJUY01001221
[OJUY] human gut metagenome; human gut
278
206
-
Val
GAC
[ENA]
¢þ
>WENV182804944
OJUY01001409
[OJUY] human gut metagenome; human gut
290
363
+
Thr
CGT
[ENA]
¢þ
>WENV182804949
OJUY01002075
[OJUY] human gut metagenome; human gut
378
452
+
Asp
GTC
[ENA]
¢þ
>WENV182804940
OJUY01001221
[OJUY] human gut metagenome; human gut
397
324
-
Gly
GCC
[ENA]
¢þ
>WENV182804945
OJUY01001409
[OJUY] human gut metagenome; human gut
457
538
+
Leu
TAG
[ENA]
¢þ
>WENV182804952
OJUY01002139
[OJUY] human gut metagenome; human gut
556
482
-
Met
CAT
[ENA]
¢þ
>WENV182804935
OJUY01000823
[OJUY] human gut metagenome; human gut
662
587
-
Asn
GTT
[ENA]
¢þ
>WENV182804947
OJUY01001612
[OJUY] human gut metagenome; human gut
727
654
-
Lys
TTT
[ENA]
¢þ
>WENV182804934
OJUY01000745
[OJUY] human gut metagenome; human gut
984
1059
+
Ala
GGC
[ENA]
¢þ
>WENV182804933
OJUY01000669
[OJUY] human gut metagenome; human gut
987
1062
+
Thr
CGT
[ENA]
¢þ
>WENV182804939
OJUY01001112
[OJUY] human gut metagenome; human gut
1012
938
-
Thr
TGT
[ENA]
¢þ
>WENV182804936
OJUY01000851
[OJUY] human gut metagenome; human gut
1201
1274
+
Glu
TTC
[ENA]
¢þ
>WENV182804931
OJUY01000348
[OJUY] human gut metagenome; human gut
1242
1167
-
Ile2
CAT
[ENA]
¢þ
>WENV182804938
OJUY01000904
[OJUY] human gut metagenome; human gut
1279
1355
+
Pro
GGG
[ENA]
¢þ
>WENV182804932
OJUY01000574
[OJUY] human gut metagenome; human gut
1290
1364
+
Glu
TTC
[ENA]
¢þ
>WENV182804937
OJUY01000872
[OJUY] human gut metagenome; human gut
1710
1785
+
Val
TAC
[ENA]
¢þ
>WENV182804912
OJUY01000066
[OJUY] human gut metagenome; human gut
2134
2058
-
Arg
TCT
[ENA]
¢þ
>WENV182804917
OJUY01000153
[OJUY] human gut metagenome; human gut
2470
2546
+
Met
CAT
[ENA]
¢þ
>WENV182804918
OJUY01000153
[OJUY] human gut metagenome; human gut
2591
2665
+
Gln
CTG
[ENA]
¢þ
>WENV182804930
OJUY01000300
[OJUY] human gut metagenome; human gut
3034
3121
+
Ser
TGA
[ENA]
¢þ
>WENV182804926
OJUY01000212
[OJUY] human gut metagenome; human gut
3307
3394
+
Ser
GGA
[ENA]
¢þ
>WENV182804924
OJUY01000205
[OJUY] human gut metagenome; human gut
3621
3696
+
Thr
TGT
[ENA]
¢þ
>WENV182804925
OJUY01000205
[OJUY] human gut metagenome; human gut
3707
3791
+
Tyr
GTA
[ENA]
¢þ
>WENV182804910
OJUY01000047
[OJUY] human gut metagenome; human gut
3925
3839
-
Leu
TAA
[ENA]
¢þ
>WENV182804909
OJUY01000047
[OJUY] human gut metagenome; human gut
4012
3939
-
Cys
GCA
[ENA]
¢þ
>WENV182804908
OJUY01000047
[OJUY] human gut metagenome; human gut
4126
4051
-
Gly
GCC
[ENA]
¢þ
>WENV182804927
OJUY01000212
[OJUY] human gut metagenome; human gut
6280
6367
+
Ser
GGA
[ENA]
¢þ
>WENV182804922
OJUY01000160
[OJUY] human gut metagenome; human gut
7006
6931
-
Asn
GTT
[ENA]
¢þ
>WENV182804915
OJUY01000078
[OJUY] human gut metagenome; human gut
7152
7076
-
Arg
ACG
[ENA]
¢þ
>WENV182804914
OJUY01000078
[OJUY] human gut metagenome; human gut
7249
7157
-
Ser
GCT
[ENA]
¢þ
>WENV182804923
OJUY01000201
[OJUY] human gut metagenome; human gut
7584
7508
-
fMet
CAT
[ENA]
¢þ
>WENV182804913
OJUY01000077
[OJUY] human gut metagenome; human gut
7847
7774
-
Gly
CCC
[ENA]
¢þ
>WENV182804921
OJUY01000160
[OJUY] human gut metagenome; human gut
7998
8087
+
Ser
CGA
[ENA]
¢þ
>WENV182804911
OJUY01000053
[OJUY] human gut metagenome; human gut
9428
9352
-
Pro
CGG
[ENA]
¢þ
>WENV182804916
OJUY01000125
[OJUY] human gut metagenome; human gut
9443
9527
+
Leu
CAA
[ENA]
¢þ
>WENV182804907
OJUY01000027
[OJUY] human gut metagenome; human gut
16218
16132
-
Leu
CAG
[ENA]
¢þ
>WENV182804906
OJUY01000008
[OJUY] human gut metagenome; human gut
22394
22319
-
Trp
CCA
[ENA]
¢þ
>WENV182804905
OJUY01000008
[OJUY] human gut metagenome; human gut
22525
22449
-
Asp
GTC
[ENA]
¢þ
>WENV182804904
OJUY01000004
[OJUY] human gut metagenome; human gut
31761
31667
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK