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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[OJVA] human gut metagenome; human gut
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182805015
OJVA01000910
[OJVA] human gut metagenome; human gut
68
143
+
Ala
GGC
[ENA]
¢þ
>WENV182805017
OJVA01001694
[OJVA] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182805021
OJVA01001824
[OJVA] human gut metagenome; human gut
107
182
+
Thr
CGT
[ENA]
¢þ
>WENV182804994
OJVA01000072
[OJVA] human gut metagenome; human gut
175
251
+
Arg
TCT
[ENA]
¢þ
>WENV182805023
OJVA01002001
[OJVA] human gut metagenome; human gut
322
249
-
Gly
CCC
[ENA]
¢þ
>WENV182805009
OJVA01000563
[OJVA] human gut metagenome; human gut
381
467
+
Leu
GAG
[ENA]
¢þ
>WENV182805022
OJVA01001852
[OJVA] human gut metagenome; human gut
497
423
-
Arg
CCT
[ENA]
¢þ
>WENV182805020
OJVA01001724
[OJVA] human gut metagenome; human gut
559
648
+
Ser
CGA
[ENA]
¢þ
>WENV182805019
OJVA01001721
[OJVA] human gut metagenome; human gut
824
748
-
Arg
TCT
[ENA]
¢þ
>WENV182805016
OJVA01001676
[OJVA] human gut metagenome; human gut
881
806
-
Trp
CCA
[ENA]
¢þ
>WENV182805018
OJVA01001721
[OJVA] human gut metagenome; human gut
914
838
-
Arg
TCG
[ENA]
¢þ
>WENV182805004
OJVA01000243
[OJVA] human gut metagenome; human gut
962
886
-
Val
GAC
[ENA]
¢þ
>WENV182805013
OJVA01000703
[OJVA] human gut metagenome; human gut
966
1041
+
Asn
GTT
[ENA]
¢þ
>WENV182805008
OJVA01000541
[OJVA] human gut metagenome; human gut
1567
1643
+
Pro
GGG
[ENA]
¢þ
>WENV182805012
OJVA01000638
[OJVA] human gut metagenome; human gut
1740
1827
+
Ser
GGA
[ENA]
¢þ
>WENV182804993
OJVA01000061
[OJVA] human gut metagenome; human gut
1758
1683
-
Glu
TTC
[ENA]
¢þ
>WENV182804996
OJVA01000123
[OJVA] human gut metagenome; human gut
1823
1898
+
Val
TAC
[ENA]
¢þ
>WENV182804997
OJVA01000123
[OJVA] human gut metagenome; human gut
1902
1977
+
Lys
TTT
[ENA]
¢þ
>WENV182805011
OJVA01000595
[OJVA] human gut metagenome; human gut
1925
1850
-
Asn
GTT
[ENA]
¢þ
>WENV182804991
OJVA01000046
[OJVA] human gut metagenome; human gut
1943
1857
-
Leu
CAG
[ENA]
¢þ
>WENV182805014
OJVA01000783
[OJVA] human gut metagenome; human gut
1994
2069
+
Ile2
CAT
[ENA]
¢þ
>WENV182804990
OJVA01000046
[OJVA] human gut metagenome; human gut
2039
1964
-
His
GTG
[ENA]
¢þ
>WENV182805003
OJVA01000189
[OJVA] human gut metagenome; human gut
2137
2062
-
Thr
GGT
[ENA]
¢þ
>WENV182805010
OJVA01000575
[OJVA] human gut metagenome; human gut
2147
2071
-
Arg
TCT
[ENA]
¢þ
>WENV182805005
OJVA01000520
[OJVA] human gut metagenome; human gut
2156
2231
+
Gly
GCC
[ENA]
¢þ
>WENV182804989
OJVA01000046
[OJVA] human gut metagenome; human gut
2174
2098
-
Arg
CCG
[ENA]
¢þ
>WENV182805002
OJVA01000189
[OJVA] human gut metagenome; human gut
2218
2144
-
Gly
TCC
[ENA]
¢þ
>WENV182804987
OJVA01000043
[OJVA] human gut metagenome; human gut
2243
2319
+
Pro
CGG
[ENA]
¢þ
>WENV182805006
OJVA01000520
[OJVA] human gut metagenome; human gut
2285
2358
+
Cys
GCA
[ENA]
¢þ
>WENV182805007
OJVA01000520
[OJVA] human gut metagenome; human gut
2371
2457
+
Leu
TAA
[ENA]
¢þ
>WENV182805001
OJVA01000189
[OJVA] human gut metagenome; human gut
2419
2335
-
Tyr
GTA
[ENA]
¢þ
>WENV182805000
OJVA01000189
[OJVA] human gut metagenome; human gut
2503
2428
-
Thr
TGT
[ENA]
¢þ
>WENV182804988
OJVA01000043
[OJVA] human gut metagenome; human gut
2601
2526
-
Phe
GAA
[ENA]
¢þ
>WENV182804992
OJVA01000058
[OJVA] human gut metagenome; human gut
2774
2698
-
Asp
GTC
[ENA]
¢þ
>WENV182804986
OJVA01000037
[OJVA] human gut metagenome; human gut
2846
2930
+
Leu
CAA
[ENA]
¢þ
>WENV182804985
OJVA01000026
[OJVA] human gut metagenome; human gut
3106
3181
+
Ile2
CAT
[ENA]
¢þ
>WENV182804998
OJVA01000173
[OJVA] human gut metagenome; human gut
3128
3204
+
Met
CAT
[ENA]
¢þ
>WENV182804999
OJVA01000173
[OJVA] human gut metagenome; human gut
3253
3327
+
Gln
CTG
[ENA]
¢þ
>WENV182804995
OJVA01000097
[OJVA] human gut metagenome; human gut
3755
3661
-
SeC
TCA
[ENA]
¢þ
>WENV182804984
OJVA01000019
[OJVA] human gut metagenome; human gut
7494
7570
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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