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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OJVC] human gut metagenome; human gut
HIT:
132 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182805141
OJVC01000532
[OJVC] human gut metagenome; human gut
36
111
+
Thr
GGT
[ENA]
¢þ
>WENV182805135
OJVC01000369
[OJVC] human gut metagenome; human gut
78
2
-
Met
CAT
[ENA]
¢þ
>WENV182805169
OJVC01000930
[OJVC] human gut metagenome; human gut
78
3
-
Ala
GGC
[ENA]
¢þ
>WENV182805139
OJVC01000482
[OJVC] human gut metagenome; human gut
82
7
-
Phe
GAA
[ENA]
¢þ
>WENV182805158
OJVC01000629
[OJVC] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182805176
OJVC01001491
[OJVC] human gut metagenome; human gut
102
176
+
Val
CAC
[ENA]
¢þ
>WENV182805174
OJVC01001051
[OJVC] human gut metagenome; human gut
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV182805199
OJVC01003898
[OJVC] human gut metagenome; human gut
106
182
+
Ile
GAT
[ENA]
¢þ
>WENV182805121
OJVC01000211
[OJVC] human gut metagenome; human gut
122
197
+
Pro
TGG
[ENA]
¢þ
>WENV182805167
OJVC01000914
[OJVC] human gut metagenome; human gut
132
57
-
Val
TAC
[ENA]
¢þ
>WENV182805198
OJVC01003830
[OJVC] human gut metagenome; human gut
137
62
-
Asp
GTC
[ENA]
¢þ
>WENV182805163
OJVC01000772
[OJVC] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182805190
OJVC01002732
[OJVC] human gut metagenome; human gut
177
102
-
fMet
CAT
[ENA]
¢þ
>WENV182805165
OJVC01000787
[OJVC] human gut metagenome; human gut
191
105
-
Leu
GAG
[ENA]
¢þ
>WENV182805170
OJVC01000969
[OJVC] human gut metagenome; human gut
201
127
-
Ile2
CAT
[ENA]
¢þ
>WENV182805197
OJVC01003830
[OJVC] human gut metagenome; human gut
218
143
-
Val
TAC
[ENA]
¢þ
>WENV182805140
OJVC01000495
[OJVC] human gut metagenome; human gut
222
298
+
fMet
CAT
[ENA]
¢þ
>WENV182805200
OJVC01003898
[OJVC] human gut metagenome; human gut
225
300
+
Ala
TGC
[ENA]
¢þ
>WENV182805166
OJVC01000914
[OJVC] human gut metagenome; human gut
249
174
-
Val
TAC
[ENA]
¢þ
>WENV182805191
OJVC01002779
[OJVC] human gut metagenome; human gut
249
176
-
Arg
CCT
[ENA]
¢þ
>WENV182805179
OJVC01001887
[OJVC] human gut metagenome; human gut
286
211
-
Ile2
CAT
[ENA]
¢þ
>WENV182805193
OJVC01003823
[OJVC] human gut metagenome; human gut
287
212
-
Ala
TGC
[ENA]
¢þ
>WENV182805196
OJVC01003830
[OJVC] human gut metagenome; human gut
298
224
-
Glu
TTC
[ENA]
¢þ
>WENV182805189
OJVC01002732
[OJVC] human gut metagenome; human gut
299
210
-
Ser
TGA
[ENA]
¢þ
>WENV182805178
OJVC01001766
[OJVC] human gut metagenome; human gut
304
229
-
Glu
TTC
[ENA]
¢þ
>WENV182805175
OJVC01001352
[OJVC] human gut metagenome; human gut
338
426
+
Leu
GAG
[ENA]
¢þ
>WENV182805195
OJVC01003830
[OJVC] human gut metagenome; human gut
382
307
-
Asn
GTT
[ENA]
¢þ
>WENV182805188
OJVC01002732
[OJVC] human gut metagenome; human gut
384
311
-
Glu
TTC
[ENA]
¢þ
>WENV182805192
OJVC01003823
[OJVC] human gut metagenome; human gut
406
330
-
Ile
GAT
[ENA]
¢þ
>WENV182805194
OJVC01003830
[OJVC] human gut metagenome; human gut
464
390
-
Gly
GCC
[ENA]
¢þ
>WENV182805187
OJVC01002732
[OJVC] human gut metagenome; human gut
471
398
-
Ile
GAT
[ENA]
¢þ
>WENV182805137
OJVC01000379
[OJVC] human gut metagenome; human gut
525
451
-
Pro
GGG
[ENA]
¢þ
>WENV182805186
OJVC01002732
[OJVC] human gut metagenome; human gut
555
485
-
Gly
TCC
[ENA]
¢þ
>WENV182805098
OJVC01000053
[OJVC] human gut metagenome; human gut
567
492
-
Thr
CGT
[ENA]
¢þ
>WENV182805100
OJVC01000056
[OJVC] human gut metagenome; human gut
597
508
-
Ser
CGA
[ENA]
¢þ
>WENV182805185
OJVC01002732
[OJVC] human gut metagenome; human gut
643
566
-
Phe
GAA
[ENA]
¢þ
>WENV182805180
OJVC01001918
[OJVC] human gut metagenome; human gut
653
726
+
Thr
CGT
[ENA]
¢þ
>WENV182805184
OJVC01002732
[OJVC] human gut metagenome; human gut
722
647
-
Asp
GTC
[ENA]
¢þ
>WENV182805181
OJVC01001926
[OJVC] human gut metagenome; human gut
847
774
-
Ala
GGC
[ENA]
¢þ
>WENV182805182
OJVC01001939
[OJVC] human gut metagenome; human gut
893
968
+
Lys
TTT
[ENA]
¢þ
>WENV182805156
OJVC01000614
[OJVC] human gut metagenome; human gut
935
859
-
Asp
GTC
[ENA]
¢þ
>WENV182805177
OJVC01001725
[OJVC] human gut metagenome; human gut
997
924
-
Gly
CCC
[ENA]
¢þ
>WENV182805183
OJVC01001960
[OJVC] human gut metagenome; human gut
1033
947
-
Leu
GAG
[ENA]
¢þ
>WENV182805153
OJVC01000577
[OJVC] human gut metagenome; human gut
1284
1197
-
Ser
TGA
[ENA]
¢þ
>WENV182805161
OJVC01000754
[OJVC] human gut metagenome; human gut
1419
1325
-
SeC
TCA
[ENA]
¢þ
>WENV182805099
OJVC01000056
[OJVC] human gut metagenome; human gut
1589
1664
+
Asn
GTT
[ENA]
¢þ
>WENV182805154
OJVC01000585
[OJVC] human gut metagenome; human gut
1643
1730
+
Ser
GGA
[ENA]
¢þ
>WENV182805152
OJVC01000572
[OJVC] human gut metagenome; human gut
1697
1625
-
Gln
CTG
[ENA]
¢þ
>WENV182805151
OJVC01000572
[OJVC] human gut metagenome; human gut
1813
1740
-
Glu
CTC
[ENA]
¢þ
>WENV182805122
OJVC01000215
[OJVC] human gut metagenome; human gut
1822
1897
+
Asn
GTT
[ENA]
¢þ
>WENV182805123
OJVC01000215
[OJVC] human gut metagenome; human gut
1900
1975
+
Thr
TGT
[ENA]
¢þ
>WENV182805114
OJVC01000134
[OJVC] human gut metagenome; human gut
1902
1975
+
Val
CAC
[ENA]
¢þ
>WENV182805115
OJVC01000134
[OJVC] human gut metagenome; human gut
2001
2076
+
Gly
GCC
[ENA]
¢þ
>WENV182805173
OJVC01001029
[OJVC] human gut metagenome; human gut
2185
2261
+
Pro
CGG
[ENA]
¢þ
>WENV182805171
OJVC01001002
[OJVC] human gut metagenome; human gut
2265
2339
+
Asn
GTT
[ENA]
¢þ
>WENV182805172
OJVC01001002
[OJVC] human gut metagenome; human gut
2345
2420
+
Thr
TGT
[ENA]
¢þ
>WENV182805162
OJVC01000758
[OJVC] human gut metagenome; human gut
2439
2363
-
Arg
TCT
[ENA]
¢þ
>WENV182805138
OJVC01000381
[OJVC] human gut metagenome; human gut
2469
2385
-
Tyr
GTA
[ENA]
¢þ
>WENV182805168
OJVC01000930
[OJVC] human gut metagenome; human gut
2777
2852
+
Val
TAC
[ENA]
¢þ
>WENV182805090
OJVC01000030
[OJVC] human gut metagenome; human gut
2929
3003
+
Arg
ACG
[ENA]
¢þ
>WENV182805091
OJVC01000030
[OJVC] human gut metagenome; human gut
3052
3126
+
Arg
ACG
[ENA]
¢þ
>WENV182805142
OJVC01000540
[OJVC] human gut metagenome; human gut
3064
3138
+
Val
TAC
[ENA]
¢þ
>WENV182805143
OJVC01000540
[OJVC] human gut metagenome; human gut
3143
3217
+
Lys
TTT
[ENA]
¢þ
>WENV182805144
OJVC01000540
[OJVC] human gut metagenome; human gut
3232
3315
+
Leu
TAG
[ENA]
¢þ
>WENV182805145
OJVC01000540
[OJVC] human gut metagenome; human gut
3321
3396
+
Thr
TGT
[ENA]
¢þ
>WENV182805146
OJVC01000540
[OJVC] human gut metagenome; human gut
3401
3472
+
Gly
GCC
[ENA]
¢þ
>WENV182805147
OJVC01000540
[OJVC] human gut metagenome; human gut
3488
3573
+
Leu
TAA
[ENA]
¢þ
>WENV182805148
OJVC01000540
[OJVC] human gut metagenome; human gut
3588
3661
+
Arg
ACG
[ENA]
¢þ
>WENV182805124
OJVC01000215
[OJVC] human gut metagenome; human gut
3603
3678
+
Ile2
CAT
[ENA]
¢þ
>WENV182805149
OJVC01000540
[OJVC] human gut metagenome; human gut
3673
3746
+
Pro
TGG
[ENA]
¢þ
>WENV182805164
OJVC01000785
[OJVC] human gut metagenome; human gut
3698
3622
-
Arg
ACG
[ENA]
¢þ
>WENV182805150
OJVC01000540
[OJVC] human gut metagenome; human gut
3759
3833
+
Ala
TGC
[ENA]
¢þ
>WENV182805160
OJVC01000652
[OJVC] human gut metagenome; human gut
3866
3779
-
Ser
GGA
[ENA]
¢þ
>WENV182805092
OJVC01000033
[OJVC] human gut metagenome; human gut
4085
4003
-
Leu
TAA
[ENA]
¢þ
>WENV182805159
OJVC01000644
[OJVC] human gut metagenome; human gut
4134
4228
+
SeC
TCA
[ENA]
¢þ
>WENV182805155
OJVC01000614
[OJVC] human gut metagenome; human gut
4276
4348
+
Glu
TTC
[ENA]
¢þ
>WENV182805103
OJVC01000084
[OJVC] human gut metagenome; human gut
4401
4326
-
Arg
CCG
[ENA]
¢þ
>WENV182805104
OJVC01000089
[OJVC] human gut metagenome; human gut
4573
4486
-
Ser
CGA
[ENA]
¢þ
>WENV182805157
OJVC01000618
[OJVC] human gut metagenome; human gut
5232
5319
+
Ser
GGA
[ENA]
¢þ
>WENV182805102
OJVC01000072
[OJVC] human gut metagenome; human gut
5580
5670
+
Leu
GAG
[ENA]
¢þ
>WENV182805136
OJVC01000372
[OJVC] human gut metagenome; human gut
5823
5739
-
Leu
CAA
[ENA]
¢þ
>WENV182805128
OJVC01000284
[OJVC] human gut metagenome; human gut
5866
5940
+
Ile2
CAT
[ENA]
¢þ
>WENV182805105
OJVC01000096
[OJVC] human gut metagenome; human gut
6446
6519
+
Gly
TCC
[ENA]
¢þ
>WENV182805132
OJVC01000316
[OJVC] human gut metagenome; human gut
6881
6954
+
Gly
CCC
[ENA]
¢þ
>WENV182805120
OJVC01000198
[OJVC] human gut metagenome; human gut
9747
9822
+
Trp
CCA
[ENA]
¢þ
>WENV182805134
OJVC01000320
[OJVC] human gut metagenome; human gut
9861
9787
-
Thr
TGT
[ENA]
¢þ
>WENV182805133
OJVC01000320
[OJVC] human gut metagenome; human gut
9941
9867
-
Asn
GTT
[ENA]
¢þ
>WENV182805119
OJVC01000162
[OJVC] human gut metagenome; human gut
10037
10112
+
His
GTG
[ENA]
¢þ
>WENV182805130
OJVC01000312
[OJVC] human gut metagenome; human gut
10736
10809
+
Gly
GCC
[ENA]
¢þ
>WENV182805129
OJVC01000298
[OJVC] human gut metagenome; human gut
10822
10898
+
Leu
CAA
[ENA]
¢þ
>WENV182805131
OJVC01000312
[OJVC] human gut metagenome; human gut
10838
10909
+
Cys
GCA
[ENA]
¢þ
>WENV182805110
OJVC01000123
[OJVC] human gut metagenome; human gut
10858
10772
-
Leu
TAA
[ENA]
¢þ
>WENV182805109
OJVC01000123
[OJVC] human gut metagenome; human gut
10943
10870
-
Cys
GCA
[ENA]
¢þ
>WENV182805108
OJVC01000123
[OJVC] human gut metagenome; human gut
11070
10995
-
Gly
GCC
[ENA]
¢þ
>WENV182805084
OJVC01000009
[OJVC] human gut metagenome; human gut
12618
12535
-
Leu
CAG
[ENA]
¢þ
>WENV182805094
OJVC01000044
[OJVC] human gut metagenome; human gut
12644
12726
+
Tyr
GTA
[ENA]
¢þ
>WENV182805127
OJVC01000230
[OJVC] human gut metagenome; human gut
12705
12781
+
Pro
GGG
[ENA]
¢þ
>WENV182805095
OJVC01000044
[OJVC] human gut metagenome; human gut
12803
12877
+
Met
CAT
[ENA]
¢þ
>WENV182805125
OJVC01000221
[OJVC] human gut metagenome; human gut
14046
14122
+
Arg
TCG
[ENA]
¢þ
>WENV182805126
OJVC01000221
[OJVC] human gut metagenome; human gut
14136
14212
+
Arg
TCT
[ENA]
¢þ
>WENV182805082
OJVC01000007
[OJVC] human gut metagenome; human gut
16858
16786
-
Arg
CCT
[ENA]
¢þ
>WENV182805111
OJVC01000125
[OJVC] human gut metagenome; human gut
17738
17814
+
Arg
TCT
[ENA]
¢þ
>WENV182805088
OJVC01000017
[OJVC] human gut metagenome; human gut
17752
17826
+
Arg
TCT
[ENA]
¢þ
>WENV182805096
OJVC01000044
[OJVC] human gut metagenome; human gut
17788
17877
+
Ser
GCT
[ENA]
¢þ
>WENV182805087
OJVC01000014
[OJVC] human gut metagenome; human gut
17794
17867
+
Lys
TTT
[ENA]
¢þ
>WENV182805118
OJVC01000155
[OJVC] human gut metagenome; human gut
17817
17904
+
Ser
TGA
[ENA]
¢þ
>WENV182805117
OJVC01000146
[OJVC] human gut metagenome; human gut
18746
18671
-
Trp
CCA
[ENA]
¢þ
>WENV182805116
OJVC01000146
[OJVC] human gut metagenome; human gut
18876
18800
-
Asp
GTC
[ENA]
¢þ
>WENV182805079
OJVC01000005
[OJVC] human gut metagenome; human gut
19085
19156
+
Gln
TTG
[ENA]
¢þ
>WENV182805113
OJVC01000128
[OJVC] human gut metagenome; human gut
20087
20011
-
Arg
ACG
[ENA]
¢þ
>WENV182805112
OJVC01000128
[OJVC] human gut metagenome; human gut
20228
20152
-
Arg
ACG
[ENA]
¢þ
>WENV182805083
OJVC01000009
[OJVC] human gut metagenome; human gut
21712
21785
+
Gly
CCC
[ENA]
¢þ
>WENV182805106
OJVC01000109
[OJVC] human gut metagenome; human gut
22352
22428
+
Val
GAC
[ENA]
¢þ
>WENV182805107
OJVC01000109
[OJVC] human gut metagenome; human gut
22433
22509
+
Val
GAC
[ENA]
¢þ
>WENV182805081
OJVC01000005
[OJVC] human gut metagenome; human gut
24067
23994
-
Ala
GGC
[ENA]
¢þ
>WENV182805074
OJVC01000004
[OJVC] human gut metagenome; human gut
27891
27966
+
Thr
CGT
[ENA]
¢þ
>WENV182805075
OJVC01000004
[OJVC] human gut metagenome; human gut
28024
28105
+
Leu
TAG
[ENA]
¢þ
>WENV182805101
OJVC01000071
[OJVC] human gut metagenome; human gut
29051
29125
+
Lys
CTT
[ENA]
¢þ
>WENV182805097
OJVC01000053
[OJVC] human gut metagenome; human gut
30026
29950
-
Asp
GTC
[ENA]
¢þ
>WENV182805093
OJVC01000036
[OJVC] human gut metagenome; human gut
30323
30397
+
Asp
GTC
[ENA]
¢þ
>WENV182805085
OJVC01000010
[OJVC] human gut metagenome; human gut
33788
33873
+
Ser
TGA
[ENA]
¢þ
>WENV182805069
OJVC01000001
[OJVC] human gut metagenome; human gut
35539
35613
+
Thr
TGT
[ENA]
¢þ
>WENV182805089
OJVC01000021
[OJVC] human gut metagenome; human gut
40192
40268
+
Pro
TGG
[ENA]
¢þ
>WENV182805072
OJVC01000002
[OJVC] human gut metagenome; human gut
53000
53074
+
Val
TAC
[ENA]
¢þ
>WENV182805086
OJVC01000010
[OJVC] human gut metagenome; human gut
57115
57041
-
Pro
CGG
[ENA]
¢þ
>WENV182805080
OJVC01000005
[OJVC] human gut metagenome; human gut
65821
65896
+
Asn
GTT
[ENA]
¢þ
>WENV182805078
OJVC01000004
[OJVC] human gut metagenome; human gut
76231
76158
-
Ala
GGC
[ENA]
¢þ
>WENV182805077
OJVC01000004
[OJVC] human gut metagenome; human gut
76328
76255
-
Val
CAC
[ENA]
¢þ
>WENV182805076
OJVC01000004
[OJVC] human gut metagenome; human gut
76430
76358
-
Val
GAC
[ENA]
¢þ
>WENV182805071
OJVC01000001
[OJVC] human gut metagenome; human gut
82069
81996
-
Ala
TGC
[ENA]
¢þ
>WENV182805070
OJVC01000001
[OJVC] human gut metagenome; human gut
82213
82139
-
Ile
GAT
[ENA]
¢þ
>WENV182805073
OJVC01000003
[OJVC] human gut metagenome; human gut
84006
83929
-
Arg
CCT
[ENA]
¢þ
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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