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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJVF] human gut metagenome; human gut
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182805631
OJVF01000536
[OJVF] human gut metagenome; human gut
22
97
+
Pro
TGG
[ENA]
¢þ
>WENV182805599
OJVF01000020
[OJVF] human gut metagenome; human gut
85
171
+
Leu
CAG
[ENA]
¢þ
>WENV182805632
OJVF01000536
[OJVF] human gut metagenome; human gut
101
176
+
Met
CAT
[ENA]
¢þ
>WENV182805604
OJVF01000026
[OJVF] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182805621
OJVF01000064
[OJVF] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182805614
OJVF01000029
[OJVF] human gut metagenome; human gut
166
92
-
Gln
TTG
[ENA]
¢þ
>WENV182805633
OJVF01000536
[OJVF] human gut metagenome; human gut
195
270
+
Ile2
CAT
[ENA]
¢þ
>WENV182805613
OJVF01000029
[OJVF] human gut metagenome; human gut
274
190
-
Leu
TAG
[ENA]
¢þ
>WENV182805634
OJVF01000536
[OJVF] human gut metagenome; human gut
303
392
+
Ser
TGA
[ENA]
¢þ
>WENV182805620
OJVF01000064
[OJVF] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182805612
OJVF01000029
[OJVF] human gut metagenome; human gut
360
284
-
Met
CAT
[ENA]
¢þ
>WENV182805619
OJVF01000064
[OJVF] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182805635
OJVF01000536
[OJVF] human gut metagenome; human gut
425
500
+
fMet
CAT
[ENA]
¢þ
>WENV182805593
OJVF01000007
[OJVF] human gut metagenome; human gut
462
387
-
Phe
GAA
[ENA]
¢þ
>WENV182805623
OJVF01000076
[OJVF] human gut metagenome; human gut
1218
1292
+
Val
TAC
[ENA]
¢þ
>WENV182805624
OJVF01000076
[OJVF] human gut metagenome; human gut
1297
1371
+
Lys
TTT
[ENA]
¢þ
>WENV182805625
OJVF01000076
[OJVF] human gut metagenome; human gut
1386
1469
+
Leu
TAG
[ENA]
¢þ
>WENV182805626
OJVF01000076
[OJVF] human gut metagenome; human gut
1475
1550
+
Thr
TGT
[ENA]
¢þ
>WENV182805627
OJVF01000076
[OJVF] human gut metagenome; human gut
1555
1626
+
Gly
GCC
[ENA]
¢þ
>WENV182805628
OJVF01000076
[OJVF] human gut metagenome; human gut
1642
1730
+
Leu
TAA
[ENA]
¢þ
>WENV182805629
OJVF01000076
[OJVF] human gut metagenome; human gut
1735
1811
+
fMet
CAT
[ENA]
¢þ
>WENV182805630
OJVF01000076
[OJVF] human gut metagenome; human gut
1815
1891
+
Met
CAT
[ENA]
¢þ
>WENV182805622
OJVF01000070
[OJVF] human gut metagenome; human gut
2213
2141
-
Ala
TGC
[ENA]
¢þ
>WENV182805609
OJVF01000027
[OJVF] human gut metagenome; human gut
6836
6911
+
Thr
CGT
[ENA]
¢þ
>WENV182805615
OJVF01000041
[OJVF] human gut metagenome; human gut
18591
18665
+
Gly
TCC
[ENA]
¢þ
>WENV182805616
OJVF01000043
[OJVF] human gut metagenome; human gut
19827
19919
+
Ser
GCT
[ENA]
¢þ
>WENV182805617
OJVF01000043
[OJVF] human gut metagenome; human gut
19924
20000
+
Arg
ACG
[ENA]
¢þ
>WENV182805618
OJVF01000043
[OJVF] human gut metagenome; human gut
20151
20227
+
Arg
ACG
[ENA]
¢þ
>WENV182805602
OJVF01000024
[OJVF] human gut metagenome; human gut
29493
29418
-
Ile2
CAT
[ENA]
¢þ
>WENV182805605
OJVF01000026
[OJVF] human gut metagenome; human gut
35383
35459
+
Arg
CCG
[ENA]
¢þ
>WENV182805606
OJVF01000026
[OJVF] human gut metagenome; human gut
35515
35590
+
His
GTG
[ENA]
¢þ
>WENV182805607
OJVF01000026
[OJVF] human gut metagenome; human gut
35614
35700
+
Leu
CAG
[ENA]
¢þ
>WENV182805608
OJVF01000026
[OJVF] human gut metagenome; human gut
35743
35819
+
Pro
TGG
[ENA]
¢þ
>WENV182805610
OJVF01000027
[OJVF] human gut metagenome; human gut
60880
60804
-
Asp
GTC
[ENA]
¢þ
>WENV182805589
OJVF01000005
[OJVF] human gut metagenome; human gut
62527
62440
-
Ser
TGA
[ENA]
¢þ
>WENV182805591
OJVF01000006
[OJVF] human gut metagenome; human gut
64057
63981
-
Pro
CGG
[ENA]
¢þ
>WENV182805598
OJVF01000016
[OJVF] human gut metagenome; human gut
66694
66618
-
Arg
TCT
[ENA]
¢þ
>WENV182805611
OJVF01000028
[OJVF] human gut metagenome; human gut
70211
70137
-
Gln
CTG
[ENA]
¢þ
>WENV182805592
OJVF01000007
[OJVF] human gut metagenome; human gut
88151
88224
+
Gly
CCC
[ENA]
¢þ
>WENV182805587
OJVF01000002
[OJVF] human gut metagenome; human gut
88185
88109
-
Val
GAC
[ENA]
¢þ
>WENV182805586
OJVF01000002
[OJVF] human gut metagenome; human gut
88266
88190
-
Val
GAC
[ENA]
¢þ
>WENV182805603
OJVF01000025
[OJVF] human gut metagenome; human gut
88270
88354
+
Leu
CAA
[ENA]
¢þ
>WENV182805596
OJVF01000010
[OJVF] human gut metagenome; human gut
88985
89071
+
Leu
GAG
[ENA]
¢þ
>WENV182805597
OJVF01000010
[OJVF] human gut metagenome; human gut
93018
93094
+
fMet
CAT
[ENA]
¢þ
>WENV182805600
OJVF01000022
[OJVF] human gut metagenome; human gut
99485
99569
+
Tyr
GTA
[ENA]
¢þ
>WENV182805601
OJVF01000022
[OJVF] human gut metagenome; human gut
99608
99692
+
Tyr
GTA
[ENA]
¢þ
>WENV182805594
OJVF01000008
[OJVF] human gut metagenome; human gut
186125
186212
+
Ser
GGA
[ENA]
¢þ
>WENV182805595
OJVF01000008
[OJVF] human gut metagenome; human gut
189206
189293
+
Ser
GGA
[ENA]
¢þ
>WENV182805590
OJVF01000006
[OJVF] human gut metagenome; human gut
190613
190707
+
SeC
TCA
[ENA]
¢þ
>WENV182805585
OJVF01000001
[OJVF] human gut metagenome; human gut
207524
207438
-
Leu
TAA
[ENA]
¢þ
>WENV182805584
OJVF01000001
[OJVF] human gut metagenome; human gut
207611
207538
-
Cys
GCA
[ENA]
¢þ
>WENV182805583
OJVF01000001
[OJVF] human gut metagenome; human gut
207727
207652
-
Gly
GCC
[ENA]
¢þ
>WENV182805582
OJVF01000001
[OJVF] human gut metagenome; human gut
228917
228828
-
Ser
CGA
[ENA]
¢þ
>WENV182805574
OJVF01000001
[OJVF] human gut metagenome; human gut
229909
229984
+
Asn
GTT
[ENA]
¢þ
>WENV182805575
OJVF01000001
[OJVF] human gut metagenome; human gut
233399
233474
+
Asn
GTT
[ENA]
¢þ
>WENV182805581
OJVF01000001
[OJVF] human gut metagenome; human gut
242302
242227
-
Asn
GTT
[ENA]
¢þ
>WENV182805576
OJVF01000001
[OJVF] human gut metagenome; human gut
244059
244134
+
Asn
GTT
[ENA]
¢þ
>WENV182805588
OJVF01000004
[OJVF] human gut metagenome; human gut
280792
280878
+
Leu
CAG
[ENA]
¢þ
>WENV182805577
OJVF01000001
[OJVF] human gut metagenome; human gut
480860
480936
+
Pro
GGG
[ENA]
¢þ
>WENV182805578
OJVF01000001
[OJVF] human gut metagenome; human gut
602871
602945
+
Arg
CCT
[ENA]
¢þ
>WENV182805580
OJVF01000001
[OJVF] human gut metagenome; human gut
624911
624836
-
Ala
GGC
[ENA]
¢þ
>WENV182805579
OJVF01000001
[OJVF] human gut metagenome; human gut
625028
624953
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK