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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[OJVT] human gut metagenome; human gut
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182806895
OJVT01000096
[OJVT] human gut metagenome; human gut
78
154
+
Met
CAT
[ENA]
¢þ
>WENV182806907
OJVT01000423
[OJVT] human gut metagenome; human gut
91
-1
-
SeC
TCA
[ENA]
¢þ
>WENV182806960
OJVT01003388
[OJVT] human gut metagenome; human gut
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV182806949
OJVT01002211
[OJVT] human gut metagenome; human gut
111
185
+
Arg
CCT
[ENA]
¢þ
>WENV182806959
OJVT01003254
[OJVT] human gut metagenome; human gut
112
37
-
Lys
TTT
[ENA]
¢þ
>WENV182806953
OJVT01002361
[OJVT] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182806941
OJVT01001792
[OJVT] human gut metagenome; human gut
125
200
+
Leu
CAA
[ENA]
¢þ
>WENV182806896
OJVT01000096
[OJVT] human gut metagenome; human gut
159
233
+
Gln
CTG
[ENA]
¢þ
>WENV182806920
OJVT01000512
[OJVT] human gut metagenome; human gut
178
103
-
Gln
TTG
[ENA]
¢þ
>WENV182806961
OJVT01003388
[OJVT] human gut metagenome; human gut
183
269
+
Leu
TAA
[ENA]
¢þ
>WENV182806958
OJVT01003254
[OJVT] human gut metagenome; human gut
195
120
-
Val
TAC
[ENA]
¢þ
>WENV182806962
OJVT01003615
[OJVT] human gut metagenome; human gut
254
328
+
Gly
TCC
[ENA]
¢þ
>WENV182806942
OJVT01001792
[OJVT] human gut metagenome; human gut
261
337
+
Pro
TGG
[ENA]
¢þ
>WENV182806919
OJVT01000512
[OJVT] human gut metagenome; human gut
264
188
-
Arg
TCT
[ENA]
¢þ
>WENV182806957
OJVT01003254
[OJVT] human gut metagenome; human gut
300
225
-
Lys
TTT
[ENA]
¢þ
>WENV182806963
OJVT01003615
[OJVT] human gut metagenome; human gut
335
410
+
Thr
GGT
[ENA]
¢þ
>WENV182806943
OJVT01001792
[OJVT] human gut metagenome; human gut
345
421
+
His
GTG
[ENA]
¢þ
>WENV182806918
OJVT01000512
[OJVT] human gut metagenome; human gut
363
289
-
Gly
GCC
[ENA]
¢þ
>WENV182806931
OJVT01000819
[OJVT] human gut metagenome; human gut
400
475
+
Ala
GGC
[ENA]
¢þ
>WENV182806944
OJVT01001792
[OJVT] human gut metagenome; human gut
430
505
+
Lys
TTT
[ENA]
¢þ
>WENV182806955
OJVT01002656
[OJVT] human gut metagenome; human gut
479
403
-
Val
GAC
[ENA]
¢þ
>WENV182806936
OJVT01001272
[OJVT] human gut metagenome; human gut
490
577
+
Ser
TGA
[ENA]
¢þ
>WENV182806945
OJVT01001792
[OJVT] human gut metagenome; human gut
508
596
+
Ser
TGA
[ENA]
¢þ
>WENV182806917
OJVT01000512
[OJVT] human gut metagenome; human gut
565
481
-
Tyr
GTA
[ENA]
¢þ
>WENV182806937
OJVT01001272
[OJVT] human gut metagenome; human gut
584
659
+
Thr
TGT
[ENA]
¢þ
>WENV182806946
OJVT01001792
[OJVT] human gut metagenome; human gut
600
675
+
Phe
GAA
[ENA]
¢þ
>WENV182806916
OJVT01000512
[OJVT] human gut metagenome; human gut
654
580
-
Thr
TGT
[ENA]
¢þ
>WENV182806947
OJVT01001792
[OJVT] human gut metagenome; human gut
682
756
+
Met
CAT
[ENA]
¢þ
>WENV182806915
OJVT01000512
[OJVT] human gut metagenome; human gut
742
666
-
Asp
GTC
[ENA]
¢þ
>WENV182806954
OJVT01002568
[OJVT] human gut metagenome; human gut
759
684
-
Phe
GAA
[ENA]
¢þ
>WENV182806948
OJVT01001792
[OJVT] human gut metagenome; human gut
770
846
+
Ile2
CAT
[ENA]
¢þ
>WENV182806908
OJVT01000501
[OJVT] human gut metagenome; human gut
779
693
-
Leu
CAG
[ENA]
¢þ
>WENV182806914
OJVT01000512
[OJVT] human gut metagenome; human gut
823
748
-
Val
TAC
[ENA]
¢þ
>WENV182806900
OJVT01000179
[OJVT] human gut metagenome; human gut
842
753
-
Ser
GGA
[ENA]
¢þ
>WENV182806950
OJVT01002225
[OJVT] human gut metagenome; human gut
851
927
+
Ile
GAT
[ENA]
¢þ
>WENV182806913
OJVT01000512
[OJVT] human gut metagenome; human gut
902
829
-
Gly
TCC
[ENA]
¢þ
>WENV182806956
OJVT01002686
[OJVT] human gut metagenome; human gut
938
863
-
Thr
TGT
[ENA]
¢þ
>WENV182806924
OJVT01000668
[OJVT] human gut metagenome; human gut
942
858
-
Tyr
GTA
[ENA]
¢þ
>WENV182806951
OJVT01002225
[OJVT] human gut metagenome; human gut
966
1041
+
Ala
TGC
[ENA]
¢þ
>WENV182806912
OJVT01000512
[OJVT] human gut metagenome; human gut
986
912
-
Glu
TTC
[ENA]
¢þ
>WENV182806933
OJVT01001028
[OJVT] human gut metagenome; human gut
1004
931
-
Gly
CCC
[ENA]
¢þ
>WENV182806911
OJVT01000512
[OJVT] human gut metagenome; human gut
1069
994
-
fMet
CAT
[ENA]
¢þ
>WENV182806910
OJVT01000512
[OJVT] human gut metagenome; human gut
1170
1084
-
Leu
TAA
[ENA]
¢þ
>WENV182806952
OJVT01002288
[OJVT] human gut metagenome; human gut
1207
1282
+
Ala
GGC
[ENA]
¢þ
>WENV182806909
OJVT01000512
[OJVT] human gut metagenome; human gut
1251
1177
-
Asn
GTT
[ENA]
¢þ
>WENV182806938
OJVT01001315
[OJVT] human gut metagenome; human gut
1314
1239
-
Ile2
CAT
[ENA]
¢þ
>WENV182806926
OJVT01000699
[OJVT] human gut metagenome; human gut
1537
1461
-
fMet
CAT
[ENA]
¢þ
>WENV182806932
OJVT01000950
[OJVT] human gut metagenome; human gut
1723
1799
+
Pro
TGG
[ENA]
¢þ
>WENV182806940
OJVT01001458
[OJVT] human gut metagenome; human gut
1767
1691
-
Val
GAC
[ENA]
¢þ
>WENV182806925
OJVT01000676
[OJVT] human gut metagenome; human gut
1801
1877
+
Arg
TCT
[ENA]
¢þ
>WENV182806934
OJVT01001039
[OJVT] human gut metagenome; human gut
1840
1934
+
SeC
TCA
[ENA]
¢þ
>WENV182806902
OJVT01000237
[OJVT] human gut metagenome; human gut
2121
2194
+
Gly
CCC
[ENA]
¢þ
>WENV182806939
OJVT01001357
[OJVT] human gut metagenome; human gut
2153
2228
+
Thr
TGT
[ENA]
¢þ
>WENV182806905
OJVT01000353
[OJVT] human gut metagenome; human gut
2154
2240
+
Leu
GAG
[ENA]
¢þ
>WENV182806927
OJVT01000729
[OJVT] human gut metagenome; human gut
2154
2240
+
Leu
GAG
[ENA]
¢þ
>WENV182806906
OJVT01000353
[OJVT] human gut metagenome; human gut
2301
2377
+
fMet
CAT
[ENA]
¢þ
>WENV182806929
OJVT01000753
[OJVT] human gut metagenome; human gut
2390
2477
+
Ser
TGA
[ENA]
¢þ
>WENV182806935
OJVT01001093
[OJVT] human gut metagenome; human gut
2482
2407
-
Asn
GTT
[ENA]
¢þ
>WENV182806922
OJVT01000547
[OJVT] human gut metagenome; human gut
2753
2678
-
Asn
GTT
[ENA]
¢þ
>WENV182806930
OJVT01000774
[OJVT] human gut metagenome; human gut
3009
2933
-
Pro
GGG
[ENA]
¢þ
>WENV182806903
OJVT01000339
[OJVT] human gut metagenome; human gut
3317
3392
+
Ile2
CAT
[ENA]
¢þ
>WENV182806923
OJVT01000563
[OJVT] human gut metagenome; human gut
3412
3488
+
Pro
CGG
[ENA]
¢þ
>WENV182806928
OJVT01000748
[OJVT] human gut metagenome; human gut
3497
3589
+
Ser
GCT
[ENA]
¢þ
>WENV182806921
OJVT01000547
[OJVT] human gut metagenome; human gut
3745
3834
+
Ser
CGA
[ENA]
¢þ
>WENV182806904
OJVT01000343
[OJVT] human gut metagenome; human gut
4118
4204
+
Leu
CAG
[ENA]
¢þ
>WENV182806892
OJVT01000095
[OJVT] human gut metagenome; human gut
5495
5570
+
Gly
GCC
[ENA]
¢þ
>WENV182806901
OJVT01000199
[OJVT] human gut metagenome; human gut
5515
5599
+
Leu
CAA
[ENA]
¢þ
>WENV182806893
OJVT01000095
[OJVT] human gut metagenome; human gut
6245
6318
+
Cys
GCA
[ENA]
¢þ
>WENV182806894
OJVT01000095
[OJVT] human gut metagenome; human gut
6329
6414
+
Leu
TAA
[ENA]
¢þ
>WENV182806899
OJVT01000122
[OJVT] human gut metagenome; human gut
6793
6717
-
Asp
GTC
[ENA]
¢þ
>WENV182806897
OJVT01000116
[OJVT] human gut metagenome; human gut
7619
7693
+
Arg
CCT
[ENA]
¢þ
>WENV182806898
OJVT01000120
[OJVT] human gut metagenome; human gut
8939
9014
+
Gly
GCC
[ENA]
¢þ
>WENV182806887
OJVT01000011
[OJVT] human gut metagenome; human gut
10222
10138
-
Tyr
GTA
[ENA]
¢þ
>WENV182806886
OJVT01000011
[OJVT] human gut metagenome; human gut
10403
10319
-
Tyr
GTA
[ENA]
¢þ
>WENV182806889
OJVT01000033
[OJVT] human gut metagenome; human gut
11131
11055
-
Arg
TCT
[ENA]
¢þ
>WENV182806888
OJVT01000014
[OJVT] human gut metagenome; human gut
12795
12870
+
Thr
CGT
[ENA]
¢þ
>WENV182806890
OJVT01000059
[OJVT] human gut metagenome; human gut
12998
13074
+
Met
CAT
[ENA]
¢þ
>WENV182806891
OJVT01000059
[OJVT] human gut metagenome; human gut
13091
13175
+
Leu
TAG
[ENA]
¢þ
>WENV182806885
OJVT01000001
[OJVT] human gut metagenome; human gut
31125
31050
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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