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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OJVU] human gut metagenome; human gut
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182807028
OJVU01001492
[OJVU] human gut metagenome; human gut
56
132
+
Met
CAT
[ENA]
¢þ
>WENV182806975
OJVU01000008
[OJVU] human gut metagenome; human gut
86
161
+
Gly
GCC
[ENA]
¢þ
>WENV182807009
OJVU01000232
[OJVU] human gut metagenome; human gut
113
38
-
Ala
TGC
[ENA]
¢þ
>WENV182807011
OJVU01000652
[OJVU] human gut metagenome; human gut
116
40
-
Arg
CCG
[ENA]
¢þ
>WENV182807043
OJVU01003152
[OJVU] human gut metagenome; human gut
126
53
-
Pro
TGG
[ENA]
¢þ
>WENV182807035
OJVU01001806
[OJVU] human gut metagenome; human gut
131
206
+
Phe
GAA
[ENA]
¢þ
>WENV182806998
OJVU01000040
[OJVU] human gut metagenome; human gut
141
214
+
Ala
GGC
[ENA]
¢þ
>WENV182807007
OJVU01000204
[OJVU] human gut metagenome; human gut
171
96
-
Ile2
CAT
[ENA]
¢þ
>WENV182807044
OJVU01003197
[OJVU] human gut metagenome; human gut
176
87
-
Ser
CGA
[ENA]
¢þ
>WENV182807029
OJVU01001492
[OJVU] human gut metagenome; human gut
180
254
+
Gln
CTG
[ENA]
¢þ
>WENV182807042
OJVU01003152
[OJVU] human gut metagenome; human gut
211
138
-
Arg
ACG
[ENA]
¢þ
>WENV182807036
OJVU01001841
[OJVU] human gut metagenome; human gut
271
196
-
Thr
CGT
[ENA]
¢þ
>WENV182807034
OJVU01001639
[OJVU] human gut metagenome; human gut
274
350
+
Arg
ACG
[ENA]
¢þ
>WENV182807008
OJVU01000232
[OJVU] human gut metagenome; human gut
295
219
-
Ile
GAT
[ENA]
¢þ
>WENV182807041
OJVU01003152
[OJVU] human gut metagenome; human gut
311
226
-
Leu
TAA
[ENA]
¢þ
>WENV182807040
OJVU01003152
[OJVU] human gut metagenome; human gut
398
327
-
Gly
GCC
[ENA]
¢þ
>WENV182807045
OJVU01003381
[OJVU] human gut metagenome; human gut
428
344
-
Tyr
GTA
[ENA]
¢þ
>WENV182807027
OJVU01001418
[OJVU] human gut metagenome; human gut
451
376
-
Asn
GTT
[ENA]
¢þ
>WENV182806982
OJVU01000011
[OJVU] human gut metagenome; human gut
457
383
-
Lys
CTT
[ENA]
¢þ
>WENV182807037
OJVU01002212
[OJVU] human gut metagenome; human gut
469
542
+
Gly
CCC
[ENA]
¢þ
>WENV182807039
OJVU01003152
[OJVU] human gut metagenome; human gut
482
410
-
Thr
TGT
[ENA]
¢þ
>WENV182807015
OJVU01000756
[OJVU] human gut metagenome; human gut
545
620
+
Asn
GTT
[ENA]
¢þ
>WENV182807010
OJVU01000543
[OJVU] human gut metagenome; human gut
570
646
+
fMet
CAT
[ENA]
¢þ
>WENV182807016
OJVU01000756
[OJVU] human gut metagenome; human gut
662
752
+
Ser
GGA
[ENA]
¢þ
>WENV182807031
OJVU01001559
[OJVU] human gut metagenome; human gut
666
742
+
His
GTG
[ENA]
¢þ
>WENV182807012
OJVU01000706
[OJVU] human gut metagenome; human gut
674
749
+
Gly
GCC
[ENA]
¢þ
>WENV182807038
OJVU01002414
[OJVU] human gut metagenome; human gut
696
621
-
Trp
CCA
[ENA]
¢þ
>WENV182807032
OJVU01001559
[OJVU] human gut metagenome; human gut
751
826
+
Lys
TTT
[ENA]
¢þ
>WENV182807030
OJVU01001522
[OJVU] human gut metagenome; human gut
764
840
+
Asp
GTC
[ENA]
¢þ
>WENV182807017
OJVU01000756
[OJVU] human gut metagenome; human gut
768
841
+
Glu
TTC
[ENA]
¢þ
>WENV182807013
OJVU01000706
[OJVU] human gut metagenome; human gut
790
863
+
Cys
GCA
[ENA]
¢þ
>WENV182807033
OJVU01001559
[OJVU] human gut metagenome; human gut
834
907
+
Cys
GCA
[ENA]
¢þ
>WENV182807018
OJVU01000756
[OJVU] human gut metagenome; human gut
853
942
+
Ser
TGA
[ENA]
¢þ
>WENV182807026
OJVU01001308
[OJVU] human gut metagenome; human gut
870
795
-
Lys
TTT
[ENA]
¢þ
>WENV182807014
OJVU01000706
[OJVU] human gut metagenome; human gut
877
963
+
Leu
TAA
[ENA]
¢þ
>WENV182807019
OJVU01000756
[OJVU] human gut metagenome; human gut
975
1050
+
fMet
CAT
[ENA]
¢þ
>WENV182807020
OJVU01000756
[OJVU] human gut metagenome; human gut
1097
1172
+
Asp
GTC
[ENA]
¢þ
>WENV182807025
OJVU01000995
[OJVU] human gut metagenome; human gut
1158
1084
-
Arg
CCT
[ENA]
¢þ
>WENV182807021
OJVU01000756
[OJVU] human gut metagenome; human gut
1176
1253
+
Phe
GAA
[ENA]
¢þ
>WENV182807024
OJVU01000803
[OJVU] human gut metagenome; human gut
1237
1324
+
Ser
GGA
[ENA]
¢þ
>WENV182807022
OJVU01000756
[OJVU] human gut metagenome; human gut
1264
1334
+
Gly
TCC
[ENA]
¢þ
>WENV182807023
OJVU01000756
[OJVU] human gut metagenome; human gut
1343
1418
+
Ile
GAT
[ENA]
¢þ
>WENV182807006
OJVU01000072
[OJVU] human gut metagenome; human gut
1963
2035
+
Ala
TGC
[ENA]
¢þ
>WENV182807002
OJVU01000049
[OJVU] human gut metagenome; human gut
3098
3171
+
Thr
CGT
[ENA]
¢þ
>WENV182807005
OJVU01000053
[OJVU] human gut metagenome; human gut
3131
3057
-
Asp
GTC
[ENA]
¢þ
>WENV182807003
OJVU01000049
[OJVU] human gut metagenome; human gut
3265
3346
+
Leu
TAG
[ENA]
¢þ
>WENV182807004
OJVU01000053
[OJVU] human gut metagenome; human gut
4382
4455
+
Glu
TTC
[ENA]
¢þ
>WENV182806974
OJVU01000006
[OJVU] human gut metagenome; human gut
5144
5071
-
Asn
GTT
[ENA]
¢þ
>WENV182807001
OJVU01000047
[OJVU] human gut metagenome; human gut
5651
5724
+
Gly
TCC
[ENA]
¢þ
>WENV182806990
OJVU01000021
[OJVU] human gut metagenome; human gut
8258
8332
+
Leu
CAA
[ENA]
¢þ
>WENV182807000
OJVU01000044
[OJVU] human gut metagenome; human gut
9214
9140
-
Asn
GTT
[ENA]
¢þ
>WENV182806999
OJVU01000041
[OJVU] human gut metagenome; human gut
11235
11160
-
His
GTG
[ENA]
¢þ
>WENV182806997
OJVU01000036
[OJVU] human gut metagenome; human gut
13828
13902
+
Val
TAC
[ENA]
¢þ
>WENV182806979
OJVU01000010
[OJVU] human gut metagenome; human gut
15736
15663
-
Gly
CCC
[ENA]
¢þ
>WENV182806976
OJVU01000008
[OJVU] human gut metagenome; human gut
16991
17065
+
Pro
GGG
[ENA]
¢þ
>WENV182806996
OJVU01000031
[OJVU] human gut metagenome; human gut
18267
18361
+
Ser
GCT
[ENA]
¢þ
>WENV182806992
OJVU01000021
[OJVU] human gut metagenome; human gut
18386
18312
-
Pro
TGG
[ENA]
¢þ
>WENV182806987
OJVU01000016
[OJVU] human gut metagenome; human gut
18731
18656
-
Trp
CCA
[ENA]
¢þ
>WENV182806984
OJVU01000013
[OJVU] human gut metagenome; human gut
19315
19241
-
fMet
CAT
[ENA]
¢þ
>WENV182806977
OJVU01000009
[OJVU] human gut metagenome; human gut
22372
22291
-
Leu
TAA
[ENA]
¢þ
>WENV182806988
OJVU01000017
[OJVU] human gut metagenome; human gut
22481
22567
+
Ser
TGA
[ENA]
¢þ
>WENV182806981
OJVU01000011
[OJVU] human gut metagenome; human gut
24055
23982
-
Lys
TTT
[ENA]
¢þ
>WENV182806994
OJVU01000029
[OJVU] human gut metagenome; human gut
25449
25523
+
Arg
TCT
[ENA]
¢þ
>WENV182806978
OJVU01000010
[OJVU] human gut metagenome; human gut
25874
25959
+
Leu
CAG
[ENA]
¢þ
>WENV182806995
OJVU01000030
[OJVU] human gut metagenome; human gut
26351
26427
+
Pro
CGG
[ENA]
¢þ
>WENV182806991
OJVU01000021
[OJVU] human gut metagenome; human gut
27626
27554
-
Gln
TTG
[ENA]
¢þ
>WENV182806993
OJVU01000024
[OJVU] human gut metagenome; human gut
33022
32948
-
Arg
ACG
[ENA]
¢þ
>WENV182806989
OJVU01000020
[OJVU] human gut metagenome; human gut
33766
33854
+
Leu
GAG
[ENA]
¢þ
>WENV182806983
OJVU01000013
[OJVU] human gut metagenome; human gut
34253
34328
+
Arg
CCG
[ENA]
¢þ
>WENV182806985
OJVU01000015
[OJVU] human gut metagenome; human gut
36300
36373
+
Glu
CTC
[ENA]
¢þ
>WENV182806986
OJVU01000015
[OJVU] human gut metagenome; human gut
36412
36486
+
Gln
CTG
[ENA]
¢þ
>WENV182806973
OJVU01000004
[OJVU] human gut metagenome; human gut
38797
38724
-
Arg
CCT
[ENA]
¢þ
>WENV182806967
OJVU01000003
[OJVU] human gut metagenome; human gut
46319
46401
+
Tyr
GTA
[ENA]
¢þ
>WENV182806968
OJVU01000003
[OJVU] human gut metagenome; human gut
46478
46552
+
Met
CAT
[ENA]
¢þ
>WENV182806980
OJVU01000011
[OJVU] human gut metagenome; human gut
48194
48281
+
Ser
GGA
[ENA]
¢þ
>WENV182806969
OJVU01000003
[OJVU] human gut metagenome; human gut
53673
53760
+
Ser
GCT
[ENA]
¢þ
>WENV182806964
OJVU01000001
[OJVU] human gut metagenome; human gut
62142
62216
+
Ile
GAT
[ENA]
¢þ
>WENV182806965
OJVU01000001
[OJVU] human gut metagenome; human gut
62259
62332
+
Ala
TGC
[ENA]
¢þ
>WENV182806972
OJVU01000004
[OJVU] human gut metagenome; human gut
74192
74118
-
Ile2
CAT
[ENA]
¢þ
>WENV182806971
OJVU01000004
[OJVU] human gut metagenome; human gut
80164
80088
-
Asp
GTC
[ENA]
¢þ
>WENV182806966
OJVU01000001
[OJVU] human gut metagenome; human gut
103341
103267
-
Thr
TGT
[ENA]
¢þ
>WENV182806970
OJVU01000003
[OJVU] human gut metagenome; human gut
103484
103569
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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