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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJVX] human gut metagenome; human gut
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182807528
OJVX01003980
[OJVX] human gut metagenome; human gut
31
105
+
Arg
CCT
[ENA]
¢þ
>WENV182807503
OJVX01000699
[OJVX] human gut metagenome; human gut
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV182807501
OJVX01000555
[OJVX] human gut metagenome; human gut
103
177
+
Gln
CTG
[ENA]
¢þ
>WENV182807526
OJVX01003468
[OJVX] human gut metagenome; human gut
132
57
-
Val
TAC
[ENA]
¢þ
>WENV182807534
OJVX01004404
[OJVX] human gut metagenome; human gut
144
70
-
Gln
TTG
[ENA]
¢þ
>WENV182807537
OJVX01005328
[OJVX] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182807493
OJVX01000162
[OJVX] human gut metagenome; human gut
153
78
-
His
GTG
[ENA]
¢þ
>WENV182807525
OJVX01003468
[OJVX] human gut metagenome; human gut
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV182807533
OJVX01004404
[OJVX] human gut metagenome; human gut
252
168
-
Leu
TAG
[ENA]
¢þ
>WENV182807492
OJVX01000162
[OJVX] human gut metagenome; human gut
284
208
-
Arg
CCG
[ENA]
¢þ
>WENV182807532
OJVX01004404
[OJVX] human gut metagenome; human gut
338
262
-
Met
CAT
[ENA]
¢þ
>WENV182807531
OJVX01004390
[OJVX] human gut metagenome; human gut
344
269
-
Thr
GGT
[ENA]
¢þ
>WENV182807536
OJVX01004751
[OJVX] human gut metagenome; human gut
359
283
-
Arg
ACG
[ENA]
¢þ
>WENV182807530
OJVX01004390
[OJVX] human gut metagenome; human gut
425
351
-
Gly
TCC
[ENA]
¢þ
>WENV182807518
OJVX01002376
[OJVX] human gut metagenome; human gut
477
551
+
Asn
GTT
[ENA]
¢þ
>WENV182807507
OJVX01001082
[OJVX] human gut metagenome; human gut
489
413
-
fMet
CAT
[ENA]
¢þ
>WENV182807535
OJVX01004751
[OJVX] human gut metagenome; human gut
497
421
-
Arg
ACG
[ENA]
¢þ
>WENV182807520
OJVX01002515
[OJVX] human gut metagenome; human gut
542
455
-
Ser
TGA
[ENA]
¢þ
>WENV182807519
OJVX01002376
[OJVX] human gut metagenome; human gut
557
633
+
Arg
TCT
[ENA]
¢þ
>WENV182807529
OJVX01004390
[OJVX] human gut metagenome; human gut
626
542
-
Tyr
GTA
[ENA]
¢þ
>WENV182807527
OJVX01003748
[OJVX] human gut metagenome; human gut
720
636
-
Tyr
GTA
[ENA]
¢þ
>WENV182807502
OJVX01000598
[OJVX] human gut metagenome; human gut
757
844
+
Ser
GGA
[ENA]
¢þ
>WENV182807496
OJVX01000362
[OJVX] human gut metagenome; human gut
901
976
+
Gly
GCC
[ENA]
¢þ
>WENV182807510
OJVX01001508
[OJVX] human gut metagenome; human gut
933
858
-
Thr
TGT
[ENA]
¢þ
>WENV182807522
OJVX01002655
[OJVX] human gut metagenome; human gut
968
1043
+
Asn
GTT
[ENA]
¢þ
>WENV182807524
OJVX01002959
[OJVX] human gut metagenome; human gut
984
1059
+
Thr
TGT
[ENA]
¢þ
>WENV182807512
OJVX01001552
[OJVX] human gut metagenome; human gut
1009
935
-
Arg
CCT
[ENA]
¢þ
>WENV182807497
OJVX01000362
[OJVX] human gut metagenome; human gut
1030
1103
+
Cys
GCA
[ENA]
¢þ
>WENV182807511
OJVX01001519
[OJVX] human gut metagenome; human gut
1030
1119
+
Ser
CGA
[ENA]
¢þ
>WENV182807517
OJVX01002108
[OJVX] human gut metagenome; human gut
1106
1012
-
SeC
TCA
[ENA]
¢þ
>WENV182807498
OJVX01000362
[OJVX] human gut metagenome; human gut
1116
1202
+
Leu
TAA
[ENA]
¢þ
>WENV182807523
OJVX01002666
[OJVX] human gut metagenome; human gut
1188
1113
-
Trp
CCA
[ENA]
¢þ
>WENV182807521
OJVX01002600
[OJVX] human gut metagenome; human gut
1268
1192
-
Val
GAC
[ENA]
¢þ
>WENV182807509
OJVX01001295
[OJVX] human gut metagenome; human gut
1505
1430
-
Ile2
CAT
[ENA]
¢þ
>WENV182807513
OJVX01001746
[OJVX] human gut metagenome; human gut
1541
1616
+
Lys
CTT
[ENA]
¢þ
>WENV182807508
OJVX01001167
[OJVX] human gut metagenome; human gut
1559
1643
+
Leu
CAA
[ENA]
¢þ
>WENV182807514
OJVX01001746
[OJVX] human gut metagenome; human gut
1622
1697
+
His
GTG
[ENA]
¢þ
>WENV182807515
OJVX01001746
[OJVX] human gut metagenome; human gut
1702
1776
+
Gln
TTG
[ENA]
¢þ
>WENV182807516
OJVX01001746
[OJVX] human gut metagenome; human gut
1784
1859
+
Lys
TTT
[ENA]
¢þ
>WENV182807495
OJVX01000220
[OJVX] human gut metagenome; human gut
2412
2487
+
Phe
GAA
[ENA]
¢þ
>WENV182807499
OJVX01000493
[OJVX] human gut metagenome; human gut
2679
2604
-
Asn
GTT
[ENA]
¢þ
>WENV182807506
OJVX01000778
[OJVX] human gut metagenome; human gut
2732
2807
+
Thr
CGT
[ENA]
¢þ
>WENV182807500
OJVX01000531
[OJVX] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182807504
OJVX01000742
[OJVX] human gut metagenome; human gut
3175
3261
+
Leu
GAG
[ENA]
¢þ
>WENV182807505
OJVX01000746
[OJVX] human gut metagenome; human gut
3202
3126
-
Pro
TGG
[ENA]
¢þ
>WENV182807491
OJVX01000132
[OJVX] human gut metagenome; human gut
3639
3712
+
Gly
CCC
[ENA]
¢þ
>WENV182807494
OJVX01000210
[OJVX] human gut metagenome; human gut
4790
4714
-
Asp
GTC
[ENA]
¢þ
>WENV182807489
OJVX01000028
[OJVX] human gut metagenome; human gut
6799
6723
-
Pro
CGG
[ENA]
¢þ
>WENV182807488
OJVX01000003
[OJVX] human gut metagenome; human gut
7497
7591
+
SeC
TCA
[ENA]
¢þ
>WENV182807490
OJVX01000071
[OJVX] human gut metagenome; human gut
7524
7600
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK