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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OJXP] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182812118
OJXP01000206
[OJXP] human gut metagenome; human gut
47
122
+
Arg
CCT
[ENA]
¢þ
>WENV182812120
OJXP01000511
[OJXP] human gut metagenome; human gut
65
154
+
Ser
CGA
[ENA]
¢þ
>WENV182812136
OJXP01000809
[OJXP] human gut metagenome; human gut
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV182812127
OJXP01000713
[OJXP] human gut metagenome; human gut
85
12
-
Glu
TTC
[ENA]
¢þ
>WENV182812121
OJXP01000523
[OJXP] human gut metagenome; human gut
112
184
+
Thr
GGT
[ENA]
¢þ
>WENV182812135
OJXP01000809
[OJXP] human gut metagenome; human gut
161
88
-
Ile
GAT
[ENA]
¢þ
>WENV182812126
OJXP01000713
[OJXP] human gut metagenome; human gut
178
103
-
His
GTG
[ENA]
¢þ
>WENV182812134
OJXP01000809
[OJXP] human gut metagenome; human gut
245
175
-
Gly
TCC
[ENA]
¢þ
>WENV182812125
OJXP01000713
[OJXP] human gut metagenome; human gut
254
181
-
Trp
CCA
[ENA]
¢þ
>WENV182812137
OJXP01000821
[OJXP] human gut metagenome; human gut
287
216
-
Trp
CCA
[ENA]
¢þ
>WENV182812133
OJXP01000809
[OJXP] human gut metagenome; human gut
333
256
-
Phe
GAA
[ENA]
¢þ
>WENV182812124
OJXP01000713
[OJXP] human gut metagenome; human gut
346
263
-
Tyr
GTA
[ENA]
¢þ
>WENV182812132
OJXP01000809
[OJXP] human gut metagenome; human gut
412
337
-
Asp
GTC
[ENA]
¢þ
>WENV182812123
OJXP01000713
[OJXP] human gut metagenome; human gut
438
363
-
Val
TAC
[ENA]
¢þ
>WENV182812129
OJXP01000775
[OJXP] human gut metagenome; human gut
472
399
-
Arg
CCG
[ENA]
¢þ
>WENV182812131
OJXP01000809
[OJXP] human gut metagenome; human gut
534
459
-
fMet
CAT
[ENA]
¢þ
>WENV182812122
OJXP01000528
[OJXP] human gut metagenome; human gut
557
486
-
Trp
CCA
[ENA]
¢þ
>WENV182812111
OJXP01000031
[OJXP] human gut metagenome; human gut
618
543
-
Arg
TCT
[ENA]
¢þ
>WENV182812130
OJXP01000809
[OJXP] human gut metagenome; human gut
656
567
-
Ser
TGA
[ENA]
¢þ
>WENV182812128
OJXP01000744
[OJXP] human gut metagenome; human gut
806
731
-
Asn
GTT
[ENA]
¢þ
>WENV182812110
OJXP01000019
[OJXP] human gut metagenome; human gut
2461
2547
+
Leu
GAG
[ENA]
¢þ
>WENV182812112
OJXP01000103
[OJXP] human gut metagenome; human gut
2532
2614
+
Tyr
GTA
[ENA]
¢þ
>WENV182812113
OJXP01000103
[OJXP] human gut metagenome; human gut
2618
2691
+
Trp
CCA
[ENA]
¢þ
>WENV182812114
OJXP01000103
[OJXP] human gut metagenome; human gut
2728
2801
+
His
GTG
[ENA]
¢þ
>WENV182812115
OJXP01000103
[OJXP] human gut metagenome; human gut
2814
2887
+
Gln
TTG
[ENA]
¢þ
>WENV182812116
OJXP01000103
[OJXP] human gut metagenome; human gut
2912
2982
+
Cys
GCA
[ENA]
¢þ
>WENV182812119
OJXP01000216
[OJXP] human gut metagenome; human gut
2945
3017
+
Thr
CGT
[ENA]
¢þ
>WENV182812117
OJXP01000103
[OJXP] human gut metagenome; human gut
2995
3080
+
Leu
CAA
[ENA]
¢þ
>WENV182812109
OJXP01000013
[OJXP] human gut metagenome; human gut
12195
12122
-
Pro
TGG
[ENA]
¢þ
>WENV182812108
OJXP01000013
[OJXP] human gut metagenome; human gut
12280
12207
-
Arg
ACG
[ENA]
¢þ
>WENV182812107
OJXP01000013
[OJXP] human gut metagenome; human gut
12380
12295
-
Leu
TAA
[ENA]
¢þ
>WENV182812106
OJXP01000013
[OJXP] human gut metagenome; human gut
12467
12396
-
Gly
GCC
[ENA]
¢þ
>WENV182812105
OJXP01000013
[OJXP] human gut metagenome; human gut
12547
12472
-
Thr
TGT
[ENA]
¢þ
>WENV182812104
OJXP01000013
[OJXP] human gut metagenome; human gut
12636
12553
-
Leu
TAG
[ENA]
¢þ
>WENV182812103
OJXP01000013
[OJXP] human gut metagenome; human gut
12725
12651
-
Lys
TTT
[ENA]
¢þ
>WENV182812102
OJXP01000013
[OJXP] human gut metagenome; human gut
12804
12730
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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