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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OJXW] human gut metagenome; human gut
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182812899
OJXW01000030
[OJXW] human gut metagenome; human gut
1
76
+
Val
TAC
[ENA]
¢þ
>WENV182812956
OJXW01002837
[OJXW] human gut metagenome; human gut
33
116
+
Leu
CAG
[ENA]
¢þ
>WENV182812916
OJXW01000075
[OJXW] human gut metagenome; human gut
47
123
+
Arg
ACG
[ENA]
¢þ
>WENV182812942
OJXW01001610
[OJXW] human gut metagenome; human gut
62
137
+
Val
TAC
[ENA]
¢þ
>WENV182812909
OJXW01000059
[OJXW] human gut metagenome; human gut
72
147
+
Lys
TTT
[ENA]
¢þ
>WENV182812936
OJXW01001228
[OJXW] human gut metagenome; human gut
93
9
-
Leu
CAA
[ENA]
¢þ
>WENV182812955
OJXW01002747
[OJXW] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV182812892
OJXW01000012
[OJXW] human gut metagenome; human gut
105
29
-
Arg
ACG
[ENA]
¢þ
>WENV182812924
OJXW01000599
[OJXW] human gut metagenome; human gut
110
184
+
Arg
TCT
[ENA]
¢þ
>WENV182812958
OJXW01002851
[OJXW] human gut metagenome; human gut
120
46
-
Ile2
CAT
[ENA]
¢þ
>WENV182812939
OJXW01001274
[OJXW] human gut metagenome; human gut
123
52
-
Arg
CCG
[ENA]
¢þ
>WENV182812957
OJXW01002850
[OJXW] human gut metagenome; human gut
150
76
-
Lys
CTT
[ENA]
¢þ
>WENV182812943
OJXW01001610
[OJXW] human gut metagenome; human gut
154
237
+
Tyr
GTA
[ENA]
¢þ
>WENV182812951
OJXW01001885
[OJXW] human gut metagenome; human gut
167
92
-
Asp
GTC
[ENA]
¢þ
>WENV182812935
OJXW01001116
[OJXW] human gut metagenome; human gut
174
247
+
Gly
TCC
[ENA]
¢þ
>WENV182812941
OJXW01001480
[OJXW] human gut metagenome; human gut
193
266
+
Arg
ACG
[ENA]
¢þ
>WENV182812926
OJXW01000679
[OJXW] human gut metagenome; human gut
195
110
-
Leu
CAA
[ENA]
¢þ
>WENV182812954
OJXW01002700
[OJXW] human gut metagenome; human gut
198
125
-
Asn
GTT
[ENA]
¢þ
>WENV182812922
OJXW01000566
[OJXW] human gut metagenome; human gut
215
140
-
Ala
TGC
[ENA]
¢þ
>WENV182812891
OJXW01000012
[OJXW] human gut metagenome; human gut
223
130
-
Ser
GCT
[ENA]
¢þ
>WENV182812944
OJXW01001610
[OJXW] human gut metagenome; human gut
242
316
+
Gln
TTG
[ENA]
¢þ
>WENV182812919
OJXW01000104
[OJXW] human gut metagenome; human gut
250
174
-
Arg
TCT
[ENA]
¢þ
>WENV182812938
OJXW01001249
[OJXW] human gut metagenome; human gut
263
348
+
Ser
GGA
[ENA]
¢þ
>WENV182812950
OJXW01001885
[OJXW] human gut metagenome; human gut
265
174
-
Ser
TGA
[ENA]
¢þ
>WENV182812917
OJXW01000085
[OJXW] human gut metagenome; human gut
278
184
-
SeC
TCA
[ENA]
¢þ
>WENV182812934
OJXW01001095
[OJXW] human gut metagenome; human gut
300
227
-
Cys
GCA
[ENA]
¢þ
>WENV182812945
OJXW01001610
[OJXW] human gut metagenome; human gut
320
393
+
Lys
TTT
[ENA]
¢þ
>WENV182812921
OJXW01000566
[OJXW] human gut metagenome; human gut
345
269
-
Ile
GAT
[ENA]
¢þ
>WENV182812949
OJXW01001885
[OJXW] human gut metagenome; human gut
347
274
-
Ile2
CAT
[ENA]
¢þ
>WENV182812952
OJXW01002010
[OJXW] human gut metagenome; human gut
367
284
-
Leu
TAG
[ENA]
¢þ
>WENV182812933
OJXW01001095
[OJXW] human gut metagenome; human gut
377
306
-
Gln
TTG
[ENA]
¢þ
>WENV182812918
OJXW01000104
[OJXW] human gut metagenome; human gut
379
303
-
Pro
TGG
[ENA]
¢þ
>WENV182812959
OJXW01002853
[OJXW] human gut metagenome; human gut
410
334
-
Pro
CGG
[ENA]
¢þ
>WENV182812948
OJXW01001885
[OJXW] human gut metagenome; human gut
448
374
-
Met
CAT
[ENA]
¢þ
>WENV182812937
OJXW01001247
[OJXW] human gut metagenome; human gut
449
522
+
Arg
CCT
[ENA]
¢þ
>WENV182812932
OJXW01001095
[OJXW] human gut metagenome; human gut
461
388
-
His
GTG
[ENA]
¢þ
>WENV182812953
OJXW01002557
[OJXW] human gut metagenome; human gut
519
429
-
Ser
GCT
[ENA]
¢þ
>WENV182812931
OJXW01001095
[OJXW] human gut metagenome; human gut
537
464
-
Trp
CCA
[ENA]
¢þ
>WENV182812947
OJXW01001885
[OJXW] human gut metagenome; human gut
548
473
-
Ala
TGC
[ENA]
¢þ
>WENV182812930
OJXW01001095
[OJXW] human gut metagenome; human gut
629
546
-
Tyr
GTA
[ENA]
¢þ
>WENV182812946
OJXW01001885
[OJXW] human gut metagenome; human gut
638
565
-
Pro
TGG
[ENA]
¢þ
>WENV182812929
OJXW01001095
[OJXW] human gut metagenome; human gut
709
634
-
Thr
TGT
[ENA]
¢þ
>WENV182812940
OJXW01001469
[OJXW] human gut metagenome; human gut
734
644
-
Ser
GGA
[ENA]
¢þ
>WENV182812928
OJXW01001095
[OJXW] human gut metagenome; human gut
791
717
-
Phe
GAA
[ENA]
¢þ
>WENV182812923
OJXW01000598
[OJXW] human gut metagenome; human gut
948
1040
+
Ser
TGA
[ENA]
¢þ
>WENV182812927
OJXW01001095
[OJXW] human gut metagenome; human gut
968
895
-
fMet
CAT
[ENA]
¢þ
>WENV182812925
OJXW01000608
[OJXW] human gut metagenome; human gut
1120
1045
-
Pro
TGG
[ENA]
¢þ
>WENV182812902
OJXW01000040
[OJXW] human gut metagenome; human gut
2450
2526
+
Ile2
CAT
[ENA]
¢þ
>WENV182812920
OJXW01000209
[OJXW] human gut metagenome; human gut
3208
3123
-
Leu
GAG
[ENA]
¢þ
>WENV182812894
OJXW01000014
[OJXW] human gut metagenome; human gut
5374
5285
-
Ser
TGA
[ENA]
¢þ
>WENV182812895
OJXW01000019
[OJXW] human gut metagenome; human gut
5669
5593
-
Val
GAC
[ENA]
¢þ
>WENV182812888
OJXW01000009
[OJXW] human gut metagenome; human gut
8273
8348
+
Lys
TTT
[ENA]
¢þ
>WENV182812889
OJXW01000009
[OJXW] human gut metagenome; human gut
8374
8449
+
Lys
TTT
[ENA]
¢þ
>WENV182812890
OJXW01000009
[OJXW] human gut metagenome; human gut
8480
8555
+
Lys
CTT
[ENA]
¢þ
>WENV182812912
OJXW01000065
[OJXW] human gut metagenome; human gut
9539
9614
+
Thr
TGT
[ENA]
¢þ
>WENV182812913
OJXW01000065
[OJXW] human gut metagenome; human gut
9645
9729
+
Tyr
GTA
[ENA]
¢þ
>WENV182812914
OJXW01000065
[OJXW] human gut metagenome; human gut
9771
9845
+
Gly
TCC
[ENA]
¢þ
>WENV182812915
OJXW01000065
[OJXW] human gut metagenome; human gut
9849
9924
+
Thr
GGT
[ENA]
¢þ
>WENV182812910
OJXW01000059
[OJXW] human gut metagenome; human gut
10954
11030
+
Asp
GTC
[ENA]
¢þ
>WENV182812911
OJXW01000059
[OJXW] human gut metagenome; human gut
11058
11134
+
Asp
GTC
[ENA]
¢þ
>WENV182812908
OJXW01000058
[OJXW] human gut metagenome; human gut
11339
11263
-
fMet
CAT
[ENA]
¢þ
>WENV182812901
OJXW01000036
[OJXW] human gut metagenome; human gut
12921
12997
+
fMet
CAT
[ENA]
¢þ
>WENV182812907
OJXW01000046
[OJXW] human gut metagenome; human gut
16875
16800
-
Trp
CCA
[ENA]
¢þ
>WENV182812906
OJXW01000046
[OJXW] human gut metagenome; human gut
16967
16891
-
Asp
GTC
[ENA]
¢þ
>WENV182812903
OJXW01000042
[OJXW] human gut metagenome; human gut
17582
17658
+
Arg
CCG
[ENA]
¢þ
>WENV182812904
OJXW01000042
[OJXW] human gut metagenome; human gut
17689
17764
+
His
GTG
[ENA]
¢þ
>WENV182812905
OJXW01000042
[OJXW] human gut metagenome; human gut
17790
17866
+
Pro
TGG
[ENA]
¢þ
>WENV182812900
OJXW01000032
[OJXW] human gut metagenome; human gut
23654
23729
+
Phe
GAA
[ENA]
¢þ
>WENV182812887
OJXW01000001
[OJXW] human gut metagenome; human gut
26592
26517
-
Asn
GTT
[ENA]
¢þ
>WENV182812896
OJXW01000020
[OJXW] human gut metagenome; human gut
29897
29973
+
Met
CAT
[ENA]
¢þ
>WENV182812897
OJXW01000020
[OJXW] human gut metagenome; human gut
29979
30063
+
Leu
TAG
[ENA]
¢þ
>WENV182812898
OJXW01000020
[OJXW] human gut metagenome; human gut
30091
30165
+
Gln
TTG
[ENA]
¢þ
>WENV182812893
OJXW01000014
[OJXW] human gut metagenome; human gut
33600
33525
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK